Prupe.2G142100_v2.0.a1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0024511
Physical Location & Seq
Forward (+)
19799934 .. 19801209
1276 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G142100.1

Sequence Viewer

Length: 339 bp
ATGATGAAGATCATGATCAGTGGATTTTGTGAGCTCCTTAGGGTTTTGTTGGCTCTTCGAAAAATCAGAAGGCTCTGGGCACTTCCTCGAACTGATCAACGGCTTGTTCTCGCTCAAAACCCAGCCTCGCTGAGGCTTAGACGGCAAAGGCAAGTTCTTGACGTCAAGAAGTTGAATTTTCTTTCTCTTGTTTTGGAACTCTTGATAGCCTTGGTGAAGCTTTCGCTTGCTATTCTCCAATTTCTCTTCATCATCCCAGTGTTGCCGTTGATGGTGAGCATCAGATTTTGTTGGCCCCGTAGGGTTTTGTTGACAAGAAGATGGAGGTGGTGTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

113

Amino Acids

13.36

Weight (kDa)

12.0

Isoelectric Point (pI)

56.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024511)

Species Orthologous Gene IDs
prunus_persica Prupe.1G171400_v2.0.a1 Prupe.2G142100_v2.0.a1 Prupe.5G052100_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 165
AcsI RAATTY 1 cut(s) 175
AcyI GRCGYC 1 cut(s) 162
AfiI CCNNNNNNNGG 1 cut(s) 132
AgsI TTSAA 1 cut(s) 175
AluBI AGCT 2 cut(s) 34, 220
AluI AGCT 2 cut(s) 34, 220
Alw21I GWGCWC 1 cut(s) 36
AoxI GGCC 1 cut(s) 293
ApoI RAATTY 1 cut(s) 175
AspS9I GGNCC 1 cut(s) 294
AsuHPI GGTGA 2 cut(s) 226, 286
AsuII TTCGAA 1 cut(s) 58
AxyI CCTNAGG 1 cut(s) 38
BaeGI GKGCMC 1 cut(s) 82
BanII GRGCYC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 36
BbvCI CCTCAGC 1 cut(s) 131
BccI CCATC 2 cut(s) 265, 315
BceAI ACGGC 3 cut(s) 116, 158, 250
BclI TGATCA 2 cut(s) 15, 94
BmgT120I GGNCC 1 cut(s) 294
BmiI GGNNCC 1 cut(s) 296
BmrI ACTGGG 1 cut(s) 251
BmsI GCATC 1 cut(s) 288
BmuI ACTGGG 1 cut(s) 251
Bpu10I CCTNAGC 1 cut(s) 131
Bpu14I TTCGAA 1 cut(s) 58
BsaBI GATNNNNATC 2 cut(s) 8, 14
BsaHI GRCGYC 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 210
BsaXI ACNNNNNCTCC 1 cut(s) 316
Bsc4I CCNNNNNNNGG 1 cut(s) 132
Bse1I ACTGG 1 cut(s) 257
Bse21I CCTNAGG 1 cut(s) 38
Bse8I GATNNNNATC 2 cut(s) 8, 14
BseDI CCNNGG 1 cut(s) 210
BseGI GGATG 1 cut(s) 252
BseJI GATNNNNATC 2 cut(s) 8, 14
BseLI CCNNNNNNNGG 1 cut(s) 132
BseMII CTCAG 1 cut(s) 122
BseNI ACTGG 1 cut(s) 257
BseSI GKGCMC 1 cut(s) 82
BseYI CCCAGC 1 cut(s) 121
BshFI GGCC 1 cut(s) 295
BsiHKAI GWGCWC 1 cut(s) 36
BslI CCNNNNNNNGG 1 cut(s) 132
BsnI GGCC 1 cut(s) 295
Bsp119I TTCGAA 1 cut(s) 58
Bsp1286I GDGCHC 2 cut(s) 36, 82
Bsp143I GATC 3 cut(s) 9, 15, 94
BspANI GGCC 1 cut(s) 295
BspCNI CTCAG 1 cut(s) 123
BspHI TCATGA 1 cut(s) 12
BspLI GGNNCC 1 cut(s) 296
BspQI GCTCTTC 1 cut(s) 60
BspT104I TTCGAA 1 cut(s) 58
BsrI ACTGG 1 cut(s) 257
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 3 cut(s) 9, 15, 94
BssNI GRCGYC 1 cut(s) 162
BssT1I CCWWGG 1 cut(s) 210
Bst6I CTCTTC 2 cut(s) 60, 251
BstACI GRCGYC 1 cut(s) 162
BstBI TTCGAA 1 cut(s) 58
BstC8I GCNNGC 1 cut(s) 228
BstDEI CTNAG 3 cut(s) 38, 131, 137
BstENI CCTNNNNNAGG 1 cut(s) 130
BstF5I GGATG 1 cut(s) 252
BstKTI GATC 3 cut(s) 12, 18, 97
BstMBI GATC 3 cut(s) 9, 15, 94
BstMWI GCNNNNNNNGC 1 cut(s) 142
BstSLI GKGCMC 1 cut(s) 82
Bsu36I CCTNAGG 1 cut(s) 38
BsuRI GGCC 1 cut(s) 295
BtsCI GGATG 1 cut(s) 252
BtsIMutI CAGTG 2 cut(s) 25, 264
Cac8I GCNNGC 1 cut(s) 228
CciI TCATGA 1 cut(s) 12
Cfr13I GGNCC 1 cut(s) 294
CviAII CATG 1 cut(s) 13
CviJI RGCY 9 cut(s) 34, 53, 73, 103, 125, 136, 209, 220, 295
CviKI_1 RGCY 9 cut(s) 34, 53, 73, 103, 125, 136, 209, 220, 295
DdeI CTNAG 3 cut(s) 38, 131, 137
DpnI GATC 3 cut(s) 11, 17, 96
DpnII GATC 3 cut(s) 9, 15, 94
Eam1104I CTCTTC 2 cut(s) 60, 251
EarI CTCTTC 2 cut(s) 60, 251
Ecl136II GAGCTC 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 210
Eco24I GRGCYC 1 cut(s) 36
Eco53kI GAGCTC 1 cut(s) 34
Eco81I CCTNAGG 1 cut(s) 38
EcoICRI GAGCTC 1 cut(s) 34
EcoNI CCTNNNNNAGG 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 210
EcoT38I GRGCYC 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 1 cut(s) 16
FaiI YATR 2 cut(s) 14, 337
FatI CATG 1 cut(s) 12
FbaI TGATCA 2 cut(s) 15, 94
FokI GGATG 1 cut(s) 239
FriOI GRGCYC 1 cut(s) 36
GsaI CCCAGC 1 cut(s) 125
HaeIII GGCC 1 cut(s) 295
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 1 cut(s) 16
HincII GTYRAC 1 cut(s) 312
HindII GTYRAC 1 cut(s) 312
HindIII AAGCTT 1 cut(s) 218
HphI GGTGA 2 cut(s) 226, 286
Hpy166II GTNNAC 1 cut(s) 312
Hpy188I TCNGA 2 cut(s) 68, 284
Hpy188III TCNNGA 4 cut(s) 13, 158, 166, 202
Hpy8I GTNNAC 1 cut(s) 312
HpyAV CCTTC 1 cut(s) 63
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 1 cut(s) 335
HpyF10VI GCNNNNNNNGC 1 cut(s) 142
HpyF3I CTNAG 3 cut(s) 38, 131, 137
HpySE526I ACGT 1 cut(s) 162
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 1 cut(s) 16
Ksp22I TGATCA 2 cut(s) 15, 94
Kzo9I GATC 3 cut(s) 9, 15, 94
LguI GCTCTTC 1 cut(s) 60
LmnI GCTCC 1 cut(s) 39
LpnPI CCDG 3 cut(s) 61, 135, 270
LweI GCATC 1 cut(s) 288
MaeII ACGT 1 cut(s) 162
MalI GATC 3 cut(s) 11, 17, 96
MboI GATC 3 cut(s) 9, 15, 94
MboII GAAGA 4 cut(s) 19, 47, 238, 330
MhlI GDGCHC 2 cut(s) 36, 82
MluCI AATT 2 cut(s) 175, 239
MnlI CCTC 4 cut(s) 96, 126, 136, 318
MslI CAYNNNNRTG 1 cut(s) 257
MwoI GCNNNNNNNGC 1 cut(s) 142
NdeII GATC 3 cut(s) 9, 15, 94
NlaIII CATG 1 cut(s) 16
NlaIV GGNNCC 1 cut(s) 296
NspV TTCGAA 1 cut(s) 58
PagI TCATGA 1 cut(s) 12
PciSI GCTCTTC 1 cut(s) 60
Psp124BI GAGCTC 1 cut(s) 36
PspFI CCCAGC 1 cut(s) 121
PspN4I GGNNCC 1 cut(s) 296
PspPI GGNCC 1 cut(s) 294
RseI CAYNNNNRTG 1 cut(s) 257
SacI GAGCTC 1 cut(s) 36
SapI GCTCTTC 1 cut(s) 60
Sau3AI GATC 3 cut(s) 9, 15, 94
Sau96I GGNCC 1 cut(s) 294
SduI GDGCHC 2 cut(s) 36, 82
SetI ASST 4 cut(s) 36, 165, 222, 329
SfaNI GCATC 1 cut(s) 288
SfuI TTCGAA 1 cut(s) 58
SmiMI CAYNNNNRTG 1 cut(s) 257
Sse9I AATT 2 cut(s) 175, 239
SstI GAGCTC 1 cut(s) 36
StyI CCWWGG 1 cut(s) 210
TaiI ACGT 1 cut(s) 165
TaqI TCGA 2 cut(s) 58, 88
TasI AATT 2 cut(s) 175, 239
TscAI CASTG 2 cut(s) 25, 264
TspDTI ATGAA 2 cut(s) 20, 238
TspRI CASTG 2 cut(s) 25, 264
XagI CCTNNNNNAGG 1 cut(s) 130
XapI RAATTY 1 cut(s) 175
ZraI GACGTC 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.