Prupe.5G052100_v2.0.a1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0024511
Physical Location & Seq
Forward (+)
5629129 .. 5630027
899 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G052100.1

Sequence Viewer

Length: 399 bp
ATGTCGATATTGATAGCCTTGGTGGAGCTTTCGAACCCTAGTCTCCAACTTCTCTTCATCATCCCAATCTTGCGGATGATGACGAGGATCAGATTGCTCAGGCGCCTTAGGGTTTTGTTGACAAGAAGATGGAGACGGTGCGCTTGGCATCAAGCGGAGGGTCTCCAAATCCTTGCCTTTGCCGTGAGATGGTTTCTTGAGCTTCTCCAGAATTGCCAAGTCGCGCCCATCAAGTTTGATGTCGTCGAACAACTTGGAGGGATCGCAAGTCATGATTTCAAGGATGAAGACAGCTTCAAGGTCGTCCAGCGGAGGGCAAGCGAGTCCACCAAAGTCGTCATCGTCAACAGGAGGCTCTCGCTCGCATCGCTCTTCCTTCAAAGCCGTCATCTTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

133

Amino Acids

15.43

Weight (kDa)

11.39

Isoelectric Point (pI)

74.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024511)

Species Orthologous Gene IDs
prunus_persica Prupe.1G171400_v2.0.a1 Prupe.2G142100_v2.0.a1 Prupe.5G052100_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 102
AccII CGCG 1 cut(s) 224
AciI CCGC 3 cut(s) 73, 155, 310
AclWI GGATC 2 cut(s) 95, 269
AcyI GRCGYC 1 cut(s) 103
AfiI CCNNNNNNNGG 2 cut(s) 189, 313
AgsI TTSAA 3 cut(s) 280, 298, 380
AluBI AGCT 3 cut(s) 28, 202, 294
AluI AGCT 3 cut(s) 28, 202, 294
Alw26I GTCTC 3 cut(s) 47, 127, 167
AlwI GGATC 2 cut(s) 95, 269
AspLEI GCGC 3 cut(s) 105, 143, 226
AsuII TTCGAA 1 cut(s) 32
AxyI CCTNAGG 1 cut(s) 107
BanI GGYRCC 1 cut(s) 102
BbsI GAAGAC 1 cut(s) 294
BccI CCATC 3 cut(s) 123, 183, 236
BceAI ACGGC 2 cut(s) 167, 369
BcoDI GTCTC 3 cut(s) 47, 127, 167
BfaI CTAG 1 cut(s) 39
BfoI RGCGCY 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 104
BmsI GCATC 2 cut(s) 157, 374
BpiI GAAGAC 1 cut(s) 294
BpmI CTGGAG 1 cut(s) 191
Bpu10I CCTNAGC 1 cut(s) 98
Bpu14I TTCGAA 1 cut(s) 32
BpuEI CTTGAG 1 cut(s) 218
BsaHI GRCGYC 1 cut(s) 103
BsaI GGTCTC 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 18
Bsc4I CCNNNNNNNGG 2 cut(s) 189, 313
Bse21I CCTNAGG 1 cut(s) 107
BseDI CCNNGG 1 cut(s) 18
BseGI GGATG 3 cut(s) 60, 81, 289
BseLI CCNNNNNNNGG 2 cut(s) 189, 313
BseMII CTCAG 1 cut(s) 112
Bsh1236I CGCG 1 cut(s) 224
BshNI GGYRCC 1 cut(s) 102
BslI CCNNNNNNNGG 2 cut(s) 189, 313
BsmAI GTCTC 3 cut(s) 47, 127, 167
BsmBI CGTCTC 1 cut(s) 127
Bso31I GGTCTC 1 cut(s) 167
Bsp119I TTCGAA 1 cut(s) 32
Bsp143I GATC 2 cut(s) 87, 261
BspACI CCGC 3 cut(s) 73, 155, 310
BspCNI CTCAG 1 cut(s) 111
BspFNI CGCG 1 cut(s) 224
BspHI TCATGA 1 cut(s) 271
BspLI GGNNCC 1 cut(s) 104
BspPI GGATC 2 cut(s) 95, 269
BspQI GCTCTTC 1 cut(s) 377
BspT104I TTCGAA 1 cut(s) 32
BspT107I GGYRCC 1 cut(s) 102
BspTNI GGTCTC 1 cut(s) 167
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 2 cut(s) 87, 261
BssNI GRCGYC 1 cut(s) 103
BssT1I CCWWGG 1 cut(s) 18
Bst4CI ACNGT 1 cut(s) 138
Bst6I CTCTTC 2 cut(s) 59, 377
BstACI GRCGYC 1 cut(s) 103
BstBI TTCGAA 1 cut(s) 32
BstC8I GCNNGC 2 cut(s) 319, 363
BstDEI CTNAG 2 cut(s) 98, 107
BstF5I GGATG 3 cut(s) 60, 81, 289
BstFNI CGCG 1 cut(s) 224
BstH2I RGCGCY 1 cut(s) 106
BstHHI GCGC 3 cut(s) 105, 143, 226
BstKTI GATC 2 cut(s) 90, 264
BstMAI GTCTC 3 cut(s) 47, 127, 167
BstMBI GATC 2 cut(s) 87, 261
BstMWI GCNNNNNNNGC 1 cut(s) 367
BstUI CGCG 1 cut(s) 224
BstV2I GAAGAC 1 cut(s) 294
Bsu36I CCTNAGG 1 cut(s) 107
BtgZI GCGATG 1 cut(s) 351
BtsCI GGATG 3 cut(s) 60, 81, 289
Cac8I GCNNGC 2 cut(s) 319, 363
CciI TCATGA 1 cut(s) 271
CfoI GCGC 3 cut(s) 105, 143, 226
CviAII CATG 1 cut(s) 272
CviJI RGCY 6 cut(s) 17, 28, 202, 294, 355, 384
CviKI_1 RGCY 6 cut(s) 17, 28, 202, 294, 355, 384
DdeI CTNAG 2 cut(s) 98, 107
DinI GGCGCC 1 cut(s) 104
DpnI GATC 2 cut(s) 89, 263
DpnII GATC 2 cut(s) 87, 261
Eam1104I CTCTTC 2 cut(s) 59, 377
EarI CTCTTC 2 cut(s) 59, 377
Eco130I CCWWGG 1 cut(s) 18
Eco31I GGTCTC 1 cut(s) 167
Eco81I CCTNAGG 1 cut(s) 107
EcoT14I CCWWGG 1 cut(s) 18
EgeI GGCGCC 1 cut(s) 104
EheI GGCGCC 1 cut(s) 104
ErhI CCWWGG 1 cut(s) 18
Esp3I CGTCTC 1 cut(s) 127
FaeI CATG 1 cut(s) 275
FaiI YATR 1 cut(s) 273
FatI CATG 1 cut(s) 271
FokI GGATG 3 cut(s) 47, 88, 296
FspBI CTAG 1 cut(s) 39
GlaI GCGC 3 cut(s) 104, 142, 225
GsuI CTGGAG 1 cut(s) 191
HaeII RGCGCY 1 cut(s) 106
HhaI GCGC 3 cut(s) 105, 143, 226
Hin1I GRCGYC 1 cut(s) 103
Hin1II CATG 1 cut(s) 275
Hin6I GCGC 3 cut(s) 103, 141, 224
HinP1I GCGC 3 cut(s) 103, 141, 224
HincII GTYRAC 2 cut(s) 120, 346
HindII GTYRAC 2 cut(s) 120, 346
HinfI GANTC 1 cut(s) 323
Hpy166II GTNNAC 3 cut(s) 120, 327, 346
Hpy188I TCNGA 2 cut(s) 92, 398
Hpy188III TCNNGA 3 cut(s) 197, 208, 272
Hpy8I GTNNAC 3 cut(s) 120, 327, 346
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 1 cut(s) 386
HpyCH4III ACNGT 1 cut(s) 138
HpyF10VI GCNNNNNNNGC 1 cut(s) 367
HpyF3I CTNAG 2 cut(s) 98, 107
Hsp92I GRCGYC 1 cut(s) 103
Hsp92II CATG 1 cut(s) 275
HspAI GCGC 3 cut(s) 103, 141, 224
KasI GGCGCC 1 cut(s) 102
Kzo9I GATC 2 cut(s) 87, 261
LguI GCTCTTC 1 cut(s) 377
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 4 cut(s) 85, 221, 320, 334
LweI GCATC 2 cut(s) 157, 374
MaeI CTAG 1 cut(s) 39
MalI GATC 2 cut(s) 89, 263
MboI GATC 2 cut(s) 87, 261
MboII GAAGA 4 cut(s) 46, 138, 299, 364
MluCI AATT 1 cut(s) 211
Mly113I GGCGCC 1 cut(s) 103
MlyI GAGTC 1 cut(s) 332
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 5 cut(s) 78, 151, 251, 306, 345
MspA1I CMGCKG 1 cut(s) 310
MvnI CGCG 1 cut(s) 224
MwoI GCNNNNNNNGC 1 cut(s) 367
NarI GGCGCC 1 cut(s) 103
NdeII GATC 2 cut(s) 87, 261
NlaIII CATG 1 cut(s) 275
NlaIV GGNNCC 1 cut(s) 104
NspV TTCGAA 1 cut(s) 32
PagI TCATGA 1 cut(s) 271
PciSI GCTCTTC 1 cut(s) 377
PleI GAGTC 1 cut(s) 331
PluTI GGCGCC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 331
PspN4I GGNNCC 1 cut(s) 104
SapI GCTCTTC 1 cut(s) 377
Sau3AI GATC 2 cut(s) 87, 261
SchI GAGTC 1 cut(s) 332
SetI ASST 4 cut(s) 30, 204, 296, 303
SfaNI GCATC 2 cut(s) 157, 374
SfoI GGCGCC 1 cut(s) 104
SfuI TTCGAA 1 cut(s) 32
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 1 cut(s) 211
SsiI CCGC 3 cut(s) 73, 155, 310
SspDI GGCGCC 1 cut(s) 102
SspMI CTAG 1 cut(s) 39
StyI CCWWGG 1 cut(s) 18
TaaI ACNGT 1 cut(s) 138
TaqI TCGA 3 cut(s) 5, 32, 246
TasI AATT 1 cut(s) 211
TspDTI ATGAA 2 cut(s) 46, 300
XspI CTAG 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.