Phytoene dehydrogenase, chloroplastic
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G14210 AT4G14210 AT4G14210 |
| fragaria_vesca | FvH4_4g12690 FvH4_4g12690 FvH4_4g12690 |
| malus_domestica | MD04G1023800.v1.1 |
| prunus_persica | Prupe.1G174100_v2.0.a1 Prupe.1G174100_v2.0.a1 |
| pyrus_communis | pycom04g02050 |
| rosa_chinensis | RchiOBHm_Chr4g0411571 |
| rosa_laevigata | RLG00000008345 |
| rosa_multiflora | Rmu_sc0001868.1_g000004 |
| rosa_roxburghii | Rroxscaffold_5G00356150 |
| rosa_rugosa | Rorug04G0107900 |
| rosa_samantha | Rh4AG169100 Rh4DG163300 |
| rosa_wichuraiana | Rw4G014050 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 317, 359 |
| AciI | CCGC | 2 cut(s) | 411, 990 |
| AclWI | GGATC | 2 cut(s) | 798, 1150 |
| AcoI | YGGCCR | 1 cut(s) | 671 |
| AcsI | RAATTY | 3 cut(s) | 116, 1685, 1727 |
| AcuI | CTGAAG | 3 cut(s) | 627, 881, 1253 |
| AfaI | GTAC | 5 cut(s) | 452, 1062, 1478, 1518, 1659 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 176, 193, 629, 1562 |
| AflIII | ACRYGT | 2 cut(s) | 1293, 1304 |
| AgsI | TTSAA | 9 cut(s) | 193, 307, 649, 737, 861, 886, 1085, 1168, 1474 |
| AjnI | CCWGG | 2 cut(s) | 577, 1519 |
| Alw21I | GWGCWC | 2 cut(s) | 961, 1648 |
| Alw26I | GTCTC | 4 cut(s) | 9, 25, 438, 943 |
| Alw44I | GTGCAC | 2 cut(s) | 957, 1644 |
| AlwI | GGATC | 2 cut(s) | 798, 1150 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 502 |
| AoxI | GGCC | 5 cut(s) | 167, 460, 639, 671, 828 |
| ApaLI | GTGCAC | 2 cut(s) | 957, 1644 |
| ApeKI | GCWGC | 3 cut(s) | 26, 254, 422 |
| ApoI | RAATTY | 3 cut(s) | 116, 1685, 1727 |
| AseI | ATTAAT | 1 cut(s) | 1005 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 890, 1006 |
| AspS9I | GGNCC | 3 cut(s) | 639, 829, 1044 |
| AsuHPI | GGTGA | 4 cut(s) | 521, 1004, 1498, 1592 |
| AsuNHI | GCTAGC | 1 cut(s) | 47 |
| AvaII | GGWCC | 1 cut(s) | 1044 |
| BaeGI | GKGCMC | 2 cut(s) | 961, 1648 |
| BalI | TGGCCA | 1 cut(s) | 673 |
| Bbv12I | GWGCWC | 2 cut(s) | 961, 1648 |
| BbvI | GCAGC | 3 cut(s) | 13, 241, 434 |
| BccI | CCATC | 6 cut(s) | 434, 740, 913, 926, 1034, 1679 |
| BceAI | ACGGC | 2 cut(s) | 286, 1521 |
| BciT130I | CCWGG | 2 cut(s) | 579, 1521 |
| BclI | TGATCA | 2 cut(s) | 970, 1246 |
| BcoDI | GTCTC | 4 cut(s) | 9, 25, 438, 943 |
| BfaI | CTAG | 2 cut(s) | 48, 1559 |
| BfmI | CTRYAG | 2 cut(s) | 133, 1446 |
| BfuAI | ACCTGC | 2 cut(s) | 317, 359 |
| BglII | AGATCT | 1 cut(s) | 1550 |
| BisI | GCNGC | 3 cut(s) | 27, 255, 423 |
| BlpI | GCTNAGC | 1 cut(s) | 297 |
| BlsI | GCNGC | 3 cut(s) | 28, 256, 424 |
| Bme1390I | CCNGG | 2 cut(s) | 579, 1521 |
| Bme18I | GGWCC | 1 cut(s) | 1044 |
| BmgT120I | GGNCC | 3 cut(s) | 639, 829, 1044 |
| BmiI | GGNNCC | 2 cut(s) | 913, 1045 |
| BmrFI | CCNGG | 2 cut(s) | 579, 1521 |
| BmsI | GCATC | 7 cut(s) | 60, 77, 82, 355, 651, 1081, 1390 |
| BmtI | GCTAGC | 1 cut(s) | 51 |
| BpmI | CTGGAG | 2 cut(s) | 1095, 1361 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 297 |
| BpuEI | CTTGAG | 2 cut(s) | 55, 772 |
| Bsa29I | ATCGAT | 1 cut(s) | 529 |
| BsaJI | CCNNGG | 2 cut(s) | 170, 1496 |
| BsaWI | WCCGGW | 2 cut(s) | 787, 1681 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 176, 193, 629, 1562 |
| Bse118I | RCCGGY | 1 cut(s) | 591 |
| Bse1I | ACTGG | 8 cut(s) | 393, 452, 979, 1112, 1151, 1188, 1196, 1330 |
| Bse3DI | GCAATG | 2 cut(s) | 570, 872 |
| BseBI | CCWGG | 2 cut(s) | 579, 1521 |
| BseCI | ATCGAT | 1 cut(s) | 529 |
| BseDI | CCNNGG | 2 cut(s) | 170, 1496 |
| BseGI | GGATG | 3 cut(s) | 445, 774, 937 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 176, 193, 629, 1562 |
| BseMI | GCAATG | 2 cut(s) | 570, 872 |
| BseMII | CTCAG | 3 cut(s) | 20, 795, 936 |
| BseNI | ACTGG | 8 cut(s) | 393, 452, 979, 1112, 1151, 1188, 1196, 1330 |
| BseRI | GAGGAG | 1 cut(s) | 276 |
| BseSI | GKGCMC | 2 cut(s) | 961, 1648 |
| BseXI | GCAGC | 3 cut(s) | 13, 241, 434 |
| BsgI | GTGCAG | 1 cut(s) | 345 |
| BshFI | GGCC | 5 cut(s) | 169, 462, 641, 673, 830 |
| BshVI | ATCGAT | 1 cut(s) | 529 |
| BsiHKAI | GWGCWC | 2 cut(s) | 961, 1648 |
| BsiSI | CCGG | 3 cut(s) | 592, 788, 1682 |
| BslFI | GGGAC | 3 cut(s) | 924, 1057, 1524 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 176, 193, 629, 1562 |
| BsmAI | GTCTC | 4 cut(s) | 9, 25, 438, 943 |
| BsmFI | GGGAC | 3 cut(s) | 924, 1057, 1524 |
| BsmI | GAATGC | 1 cut(s) | 547 |
| BsnI | GGCC | 5 cut(s) | 169, 462, 641, 673, 830 |
| Bsp1286I | GDGCHC | 2 cut(s) | 961, 1648 |
| Bsp1407I | TGTACA | 1 cut(s) | 1657 |
| Bsp143I | GATC | 7 cut(s) | 526, 790, 970, 1155, 1246, 1450, 1550 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 297 |
| BspACI | CCGC | 2 cut(s) | 411, 990 |
| BspANI | GGCC | 5 cut(s) | 169, 462, 641, 673, 830 |
| BspCNI | CTCAG | 3 cut(s) | 19, 796, 937 |
| BspDI | ATCGAT | 1 cut(s) | 529 |
| BspLI | GGNNCC | 2 cut(s) | 913, 1045 |
| BspMI | ACCTGC | 2 cut(s) | 317, 359 |
| BspOI | GCTAGC | 1 cut(s) | 51 |
| BspPI | GGATC | 2 cut(s) | 798, 1150 |
| BsrDI | GCAATG | 2 cut(s) | 570, 872 |
| BsrFI | RCCGGY | 1 cut(s) | 591 |
| BsrGI | TGTACA | 1 cut(s) | 1657 |
| BsrI | ACTGG | 8 cut(s) | 393, 452, 979, 1112, 1151, 1188, 1196, 1330 |
| BssAI | RCCGGY | 1 cut(s) | 591 |
| BssECI | CCNNGG | 2 cut(s) | 170, 1496 |
| BssMI | GATC | 7 cut(s) | 526, 790, 970, 1155, 1246, 1450, 1550 |
| BssT1I | CCWWGG | 1 cut(s) | 1496 |
| Bst2UI | CCWGG | 2 cut(s) | 579, 1521 |
| Bst4CI | ACNGT | 3 cut(s) | 911, 1048, 1516 |
| Bst6I | CTCTTC | 2 cut(s) | 271, 1046 |
| BstAUI | TGTACA | 1 cut(s) | 1657 |
| BstC8I | GCNNGC | 4 cut(s) | 49, 184, 708, 726 |
| BstDEI | CTNAG | 5 cut(s) | 6, 247, 297, 804, 945 |
| BstF5I | GGATG | 3 cut(s) | 445, 774, 937 |
| BstKTI | GATC | 7 cut(s) | 529, 793, 973, 1158, 1249, 1453, 1553 |
| BstMAI | GTCTC | 4 cut(s) | 9, 25, 438, 943 |
| BstMBI | GATC | 7 cut(s) | 526, 790, 970, 1155, 1246, 1450, 1550 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 332, 341, 670, 1135 |
| BstNI | CCWGG | 2 cut(s) | 579, 1521 |
| BstNSI | RCATGY | 2 cut(s) | 1297, 1308 |
| BstSCI | CCNGG | 2 cut(s) | 577, 1519 |
| BstSFI | CTRYAG | 2 cut(s) | 133, 1446 |
| BstSLI | GKGCMC | 2 cut(s) | 961, 1648 |
| BstV1I | GCAGC | 3 cut(s) | 13, 241, 434 |
| BstX2I | RGATCY | 2 cut(s) | 1155, 1550 |
| BstYI | RGATCY | 2 cut(s) | 1155, 1550 |
| Bsu15I | ATCGAT | 1 cut(s) | 529 |
| BsuRI | GGCC | 5 cut(s) | 169, 462, 641, 673, 830 |
| BsuTUI | ATCGAT | 1 cut(s) | 529 |
| BtgZI | GCGATG | 1 cut(s) | 105 |
| BtsCI | GGATG | 3 cut(s) | 445, 774, 937 |
| BtsI | GCAGTG | 2 cut(s) | 542, 1387 |
| BtsIMutI | CAGTG | 3 cut(s) | 14, 542, 1387 |
| BveI | ACCTGC | 2 cut(s) | 317, 359 |
| Cac8I | GCNNGC | 4 cut(s) | 49, 184, 708, 726 |
| CaiI | CAGNNNCTG | 1 cut(s) | 502 |
| Cfr10I | RCCGGY | 1 cut(s) | 591 |
| Cfr13I | GGNCC | 3 cut(s) | 639, 829, 1044 |
| ClaI | ATCGAT | 1 cut(s) | 529 |
| CsiI | ACCWGGT | 1 cut(s) | 1519 |
| Csp6I | GTAC | 5 cut(s) | 451, 1061, 1477, 1517, 1658 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1096, 1131 |
| CviAII | CATG | 9 cut(s) | 426, 820, 1078, 1294, 1305, 1377, 1481, 1697, 1710 |
| CviQI | GTAC | 5 cut(s) | 451, 1061, 1477, 1517, 1658 |
| DdeI | CTNAG | 5 cut(s) | 6, 247, 297, 804, 945 |
| DpnI | GATC | 7 cut(s) | 528, 792, 972, 1157, 1248, 1452, 1552 |
| DpnII | GATC | 7 cut(s) | 526, 790, 970, 1155, 1246, 1450, 1550 |
| DraI | TTTAAA | 1 cut(s) | 106 |
| EaeI | YGGCCR | 1 cut(s) | 671 |
| Eam1104I | CTCTTC | 2 cut(s) | 271, 1046 |
| EarI | CTCTTC | 2 cut(s) | 271, 1046 |
| EciI | GGCGGA | 1 cut(s) | 426 |
| Eco130I | CCWWGG | 1 cut(s) | 1496 |
| Eco147I | AGGCCT | 1 cut(s) | 462 |
| Eco32I | GATATC | 2 cut(s) | 1120, 1374 |
| Eco47I | GGWCC | 1 cut(s) | 1044 |
| Eco57I | CTGAAG | 3 cut(s) | 627, 881, 1253 |
| EcoO109I | RGGNCCY | 1 cut(s) | 829 |
| EcoRII | CCWGG | 2 cut(s) | 577, 1519 |
| EcoRV | GATATC | 2 cut(s) | 1120, 1374 |
| EcoT14I | CCWWGG | 1 cut(s) | 1496 |
| EcoT22I | ATGCAT | 1 cut(s) | 872 |
| ErhI | CCWWGG | 1 cut(s) | 1496 |
| FaeI | CATG | 9 cut(s) | 429, 823, 1081, 1297, 1308, 1380, 1484, 1700, 1713 |
| FaqI | GGGAC | 3 cut(s) | 924, 1057, 1524 |
| FatI | CATG | 9 cut(s) | 425, 819, 1077, 1293, 1304, 1376, 1480, 1696, 1709 |
| FauNDI | CATATG | 2 cut(s) | 1214, 1243 |
| FbaI | TGATCA | 2 cut(s) | 970, 1246 |
| Fnu4HI | GCNGC | 3 cut(s) | 27, 255, 423 |
| FokI | GGATG | 3 cut(s) | 452, 781, 944 |
| Fsp4HI | GCNGC | 3 cut(s) | 27, 255, 423 |
| FspBI | CTAG | 2 cut(s) | 48, 1559 |
| GluI | GCNGC | 3 cut(s) | 27, 255, 423 |
| GsuI | CTGGAG | 2 cut(s) | 1095, 1361 |
| HaeIII | GGCC | 5 cut(s) | 169, 462, 641, 673, 830 |
| HapII | CCGG | 3 cut(s) | 592, 788, 1682 |
| Hin1II | CATG | 9 cut(s) | 429, 823, 1081, 1297, 1308, 1380, 1484, 1700, 1713 |
| HindIII | AAGCTT | 1 cut(s) | 1127 |
| HinfI | GANTC | 3 cut(s) | 891, 951, 1385 |
| HpaII | CCGG | 3 cut(s) | 592, 788, 1682 |
| HphI | GGTGA | 4 cut(s) | 521, 1004, 1498, 1592 |
| Hpy166II | GTNNAC | 5 cut(s) | 959, 1210, 1507, 1529, 1646 |
| Hpy188I | TCNGA | 6 cut(s) | 278, 489, 498, 1001, 1390, 1726 |
| Hpy188III | TCNNGA | 6 cut(s) | 313, 899, 1011, 1168, 1433, 1675 |
| Hpy8I | GTNNAC | 5 cut(s) | 959, 1210, 1507, 1529, 1646 |
| HpyAV | CCTTC | 6 cut(s) | 159, 187, 301, 535, 905, 1610 |
| HpyCH4III | ACNGT | 3 cut(s) | 911, 1048, 1516 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 332, 341, 670, 1135 |
| HpyF3I | CTNAG | 5 cut(s) | 6, 247, 297, 804, 945 |
| Hsp92II | CATG | 9 cut(s) | 429, 823, 1081, 1297, 1308, 1380, 1484, 1700, 1713 |
| Ksp22I | TGATCA | 2 cut(s) | 970, 1246 |
| Kzo9I | GATC | 7 cut(s) | 526, 790, 970, 1155, 1246, 1450, 1550 |
| LmnI | GCTCC | 2 cut(s) | 544, 1074 |
| Lsp1109I | GCAGC | 3 cut(s) | 13, 241, 434 |
| LweI | GCATC | 7 cut(s) | 60, 77, 82, 355, 651, 1081, 1390 |
| MabI | ACCWGGT | 1 cut(s) | 1519 |
| MaeI | CTAG | 2 cut(s) | 48, 1559 |
| MaeIII | GTNAC | 2 cut(s) | 796, 1300 |
| MalI | GATC | 7 cut(s) | 528, 792, 972, 1157, 1248, 1452, 1552 |
| MboI | GATC | 7 cut(s) | 526, 790, 970, 1155, 1246, 1450, 1550 |
| MboII | GAAGA | 6 cut(s) | 258, 463, 661, 1063, 1246, 1376 |
| MfeI | CAATTG | 3 cut(s) | 693, 963, 1653 |
| MflI | RGATCY | 2 cut(s) | 1155, 1550 |
| MhlI | GDGCHC | 2 cut(s) | 961, 1648 |
| MlsI | TGGCCA | 1 cut(s) | 673 |
| MluNI | TGGCCA | 1 cut(s) | 673 |
| MlyI | GAGTC | 1 cut(s) | 945 |
| MnlI | CCTC | 8 cut(s) | 165, 292, 297, 765, 799, 1281, 1555, 1618 |
| Mox20I | TGGCCA | 1 cut(s) | 673 |
| Mph1103I | ATGCAT | 1 cut(s) | 872 |
| MroXI | GAANNNNTTC | 2 cut(s) | 890, 1006 |
| MscI | TGGCCA | 1 cut(s) | 673 |
| MseI | TTAA | 7 cut(s) | 105, 143, 626, 843, 1005, 1277, 1735 |
| Msp20I | TGGCCA | 1 cut(s) | 673 |
| MspI | CCGG | 3 cut(s) | 592, 788, 1682 |
| MspR9I | CCNGG | 2 cut(s) | 579, 1521 |
| MunI | CAATTG | 3 cut(s) | 693, 963, 1653 |
| Mva1269I | GAATGC | 1 cut(s) | 547 |
| MvaI | CCWGG | 2 cut(s) | 579, 1521 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 332, 341, 670, 1135 |
| NdeI | CATATG | 2 cut(s) | 1214, 1243 |
| NdeII | GATC | 7 cut(s) | 526, 790, 970, 1155, 1246, 1450, 1550 |
| NheI | GCTAGC | 1 cut(s) | 47 |
| NlaIII | CATG | 9 cut(s) | 429, 823, 1081, 1297, 1308, 1380, 1484, 1700, 1713 |
| NlaIV | GGNNCC | 2 cut(s) | 913, 1045 |
| NmeAIII | GCCGAG | 1 cut(s) | 195 |
| NmuCI | GTSAC | 1 cut(s) | 796 |
| NsiI | ATGCAT | 1 cut(s) | 872 |
| NspI | RCATGY | 2 cut(s) | 1297, 1308 |
| PceI | AGGCCT | 1 cut(s) | 462 |
| PciI | ACATGT | 2 cut(s) | 1293, 1304 |
| PctI | GAATGC | 1 cut(s) | 547 |
| PdmI | GAANNNNTTC | 2 cut(s) | 890, 1006 |
| PfeI | GAWTC | 2 cut(s) | 891, 1385 |
| PkrI | GCNGC | 3 cut(s) | 28, 256, 424 |
| PleI | GAGTC | 1 cut(s) | 945 |
| PpsI | GAGTC | 1 cut(s) | 945 |
| PscI | ACATGT | 2 cut(s) | 1293, 1304 |
| PshBI | ATTAAT | 1 cut(s) | 1005 |
| Psp6I | CCWGG | 2 cut(s) | 577, 1519 |
| PspGI | CCWGG | 2 cut(s) | 577, 1519 |
| PspN4I | GGNNCC | 2 cut(s) | 913, 1045 |
| PspPI | GGNCC | 3 cut(s) | 639, 829, 1044 |
| PstNI | CAGNNNCTG | 1 cut(s) | 502 |
| PsuI | RGATCY | 2 cut(s) | 1155, 1550 |
| RsaI | GTAC | 5 cut(s) | 452, 1062, 1478, 1518, 1659 |
| RsaNI | GTAC | 5 cut(s) | 451, 1061, 1477, 1517, 1658 |
| SaqAI | TTAA | 7 cut(s) | 105, 143, 626, 843, 1005, 1277, 1735 |
| SatI | GCNGC | 3 cut(s) | 27, 255, 423 |
| Sau3AI | GATC | 7 cut(s) | 526, 790, 970, 1155, 1246, 1450, 1550 |
| Sau96I | GGNCC | 3 cut(s) | 639, 829, 1044 |
| SchI | GAGTC | 1 cut(s) | 945 |
| ScrFI | CCNGG | 2 cut(s) | 579, 1521 |
| SduI | GDGCHC | 2 cut(s) | 961, 1648 |
| SexAI | ACCWGGT | 1 cut(s) | 1519 |
| SfaNI | GCATC | 7 cut(s) | 60, 77, 82, 355, 651, 1081, 1390 |
| SfcI | CTRYAG | 2 cut(s) | 133, 1446 |
| SinI | GGWCC | 1 cut(s) | 1044 |
| SmlI | CTYRAG | 2 cut(s) | 34, 751 |
| SmoI | CTYRAG | 2 cut(s) | 34, 751 |
| SseBI | AGGCCT | 1 cut(s) | 462 |
| SsiI | CCGC | 2 cut(s) | 411, 990 |
| SspI | AATATT | 3 cut(s) | 356, 493, 1316 |
| SspMI | CTAG | 2 cut(s) | 48, 1559 |
| StuI | AGGCCT | 1 cut(s) | 462 |
| StyD4I | CCNGG | 2 cut(s) | 577, 1519 |
| StyI | CCWWGG | 1 cut(s) | 1496 |
| TaaI | ACNGT | 3 cut(s) | 911, 1048, 1516 |
| TaqI | TCGA | 2 cut(s) | 529, 793 |
| TatI | WGTACW | 2 cut(s) | 1060, 1657 |
| TfiI | GAWTC | 2 cut(s) | 891, 1385 |
| Tru1I | TTAA | 7 cut(s) | 105, 143, 626, 843, 1005, 1277, 1735 |
| Tru9I | TTAA | 7 cut(s) | 105, 143, 626, 843, 1005, 1277, 1735 |
| TscAI | CASTG | 3 cut(s) | 14, 542, 1387 |
| TseFI | GTSAC | 1 cut(s) | 796 |
| TseI | GCWGC | 3 cut(s) | 26, 254, 422 |
| Tsp45I | GTSAC | 1 cut(s) | 796 |
| TspDTI | ATGAA | 4 cut(s) | 90, 867, 1704, 1716 |
| TspGWI | ACGGA | 1 cut(s) | 1288 |
| TspRI | CASTG | 3 cut(s) | 14, 542, 1387 |
| VneI | GTGCAC | 2 cut(s) | 957, 1644 |
| VpaK11BI | GGWCC | 1 cut(s) | 1044 |
| VspI | ATTAAT | 1 cut(s) | 1005 |
| XapI | RAATTY | 3 cut(s) | 116, 1685, 1727 |
| XceI | RCATGY | 2 cut(s) | 1297, 1308 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1365 |
| XmnI | GAANNNNTTC | 2 cut(s) | 890, 1006 |
| XspI | CTAG | 2 cut(s) | 48, 1559 |
| Zsp2I | ATGCAT | 1 cut(s) | 872 |