Prupe.1G174100_v2.0.a1

Phytoene dehydrogenase, chloroplastic

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
14644373 .. 14654823
10451 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G174100.1

Sequence Viewer

Length: 1737 bp
ATGTCTCAGTGGGCTTGTGTCTCTGCTGCTAACTTGAGCTGTCAAGCTAGCATCATCAACACTCAAAAGCTACGAAACACTCCCAGATGCGATGCCTTTTCATTTAAAGGTAGTGAATTTATGGCTCAAAGCTGTAGATTTTTAAGCCCACAAACTATTTATGGAAGGCCGAGGAATGGTGCTTGCCCTTTGAAGGTGGTTTGCGTTGATTATCCAAGACCAGACCTTGACAATACTGCTAATTTCTTAGAAGCTGCATATTTCTCTTCCACTTTCCGAGCCTCTCCTCGTCCAGCTAAGCCGTTGAAGGTCGTGATTGCTGGTGCAGGTTTGGCTGGTCTGGCAACTGCAAAATATTTGGCTGATGCAGGTCATAAACCTATCTTACTGGAAGCAAGAGATGTTCTGGGCGGAAAGGTGGCAGCATGGAAAGATAAGGATGGAGACTGGTACGAAACAGGCCTACATATCTTCTTTGGGGCTTATCCGAATATTCAGAACCTGTTTGGTGAGCTTGGTATTGATGATCGATTGCAGTGGAAGGAGCATTCTATGATATTTGCAATGCCAAGCAAACCAGGAGAGTTCAGCCGGTTTGATTTCCCTGAAGTTTTACCAGCACCCTTAAATGGAATATGGGCCATATTGAAGAACAATGAGATGCTGACTTGGCCAGAGAAAATCAAGTTTGCAATTGGACTACTGCCAGCAATTCTTGGTGGGCAGGCTTATGTTGAAGCCCAAGATGGCTTGAGTGTAAAAGATTGGATGAGGAAACAGGGCATACCGGATCGAGTGACTACTGAGGTGTTTATTGCCATGTCAAAGGCCCTGAACTTTATTAACCCTGATGAACTTTCAATGCAATGCATATTGATTGCTTTGAACCGATTCCTTCAGGAGAAACACGGTTCCAAGATGGCTTTTTTGGATGGTAGTCCCCCTGAGAGACTCTGTGCACCAATTGTTGATCATATCCAGTCATTAGGCGGTGAAGTCCGAATTAATTCCCGAATACAGAGAATTGAGCTAAATAAAGATGGGACCGTGAAGAGTTTTGTACTAAATAATGGGAGCATGATTGAAGCAGATGCCTATGTATTCGCCACTCCAGTTGATATCCTAAAGCTTCTATTGCCTGATAACTGGAAAGAGATCCCATATTTCAAGAAATTGGAGAAACTGGTTGGCGTTCCAGTTATCAATGTTCACATATGGTTTGACAGAAAGCTGAAGAACACATATGATCATCTACTTTTTAGCAGAAGTCCTCTTTTAAGTGTCTATGCCGACATGTCCGTAACATGTAAGGAATATTACAATCCAAACCAGTCAATGCTGGAGTTGGTTTTTGCACCAGCAGAAGAATGGATATCATGCAGTGATTCAGAAATTATTGATGCTACACTCAAAGAACTTGCAAAACTCTTTCCAGATGAGATAGCTGTAGATCAAAGCAAAGCAAAGATTTTGAAGTACCATGTGGTGAAAACACCAAGGTCGGTTTACAAAACTGTACCAGGTTGTGAACCTTGCCGTCCCTTGCAAAGATCTCCCCTAGAGGGTTTCTATTTAGCTGGTGATTACACAAAACAAAAGTATTTAGCCTCAATGGAAGGTGCTGTTCTGTCAGGGAAACTTTGTGCACAAGCAATTGTACAGGTAATTTCCATCAGGACACCGGAATTTATATGGCATGATGAACACTCATGTTCATCTATGTCTGAATTTACTTAA

Protein Analysis

579

Amino Acids

64.67

Weight (kDa)

7.1

Isoelectric Point (pI)

42.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013013)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 317, 359
AciI CCGC 2 cut(s) 411, 990
AclWI GGATC 2 cut(s) 798, 1150
AcoI YGGCCR 1 cut(s) 671
AcsI RAATTY 3 cut(s) 116, 1685, 1727
AcuI CTGAAG 3 cut(s) 627, 881, 1253
AfaI GTAC 5 cut(s) 452, 1062, 1478, 1518, 1659
AfiI CCNNNNNNNGG 4 cut(s) 176, 193, 629, 1562
AflIII ACRYGT 2 cut(s) 1293, 1304
AgsI TTSAA 9 cut(s) 193, 307, 649, 737, 861, 886, 1085, 1168, 1474
AjnI CCWGG 2 cut(s) 577, 1519
Alw21I GWGCWC 2 cut(s) 961, 1648
Alw26I GTCTC 4 cut(s) 9, 25, 438, 943
Alw44I GTGCAC 2 cut(s) 957, 1644
AlwI GGATC 2 cut(s) 798, 1150
AlwNI CAGNNNCTG 1 cut(s) 502
AoxI GGCC 5 cut(s) 167, 460, 639, 671, 828
ApaLI GTGCAC 2 cut(s) 957, 1644
ApeKI GCWGC 3 cut(s) 26, 254, 422
ApoI RAATTY 3 cut(s) 116, 1685, 1727
AseI ATTAAT 1 cut(s) 1005
Asp700I GAANNNNTTC 2 cut(s) 890, 1006
AspS9I GGNCC 3 cut(s) 639, 829, 1044
AsuHPI GGTGA 4 cut(s) 521, 1004, 1498, 1592
AsuNHI GCTAGC 1 cut(s) 47
AvaII GGWCC 1 cut(s) 1044
BaeGI GKGCMC 2 cut(s) 961, 1648
BalI TGGCCA 1 cut(s) 673
Bbv12I GWGCWC 2 cut(s) 961, 1648
BbvI GCAGC 3 cut(s) 13, 241, 434
BccI CCATC 6 cut(s) 434, 740, 913, 926, 1034, 1679
BceAI ACGGC 2 cut(s) 286, 1521
BciT130I CCWGG 2 cut(s) 579, 1521
BclI TGATCA 2 cut(s) 970, 1246
BcoDI GTCTC 4 cut(s) 9, 25, 438, 943
BfaI CTAG 2 cut(s) 48, 1559
BfmI CTRYAG 2 cut(s) 133, 1446
BfuAI ACCTGC 2 cut(s) 317, 359
BglII AGATCT 1 cut(s) 1550
BisI GCNGC 3 cut(s) 27, 255, 423
BlpI GCTNAGC 1 cut(s) 297
BlsI GCNGC 3 cut(s) 28, 256, 424
Bme1390I CCNGG 2 cut(s) 579, 1521
Bme18I GGWCC 1 cut(s) 1044
BmgT120I GGNCC 3 cut(s) 639, 829, 1044
BmiI GGNNCC 2 cut(s) 913, 1045
BmrFI CCNGG 2 cut(s) 579, 1521
BmsI GCATC 7 cut(s) 60, 77, 82, 355, 651, 1081, 1390
BmtI GCTAGC 1 cut(s) 51
BpmI CTGGAG 2 cut(s) 1095, 1361
Bpu1102I GCTNAGC 1 cut(s) 297
BpuEI CTTGAG 2 cut(s) 55, 772
Bsa29I ATCGAT 1 cut(s) 529
BsaJI CCNNGG 2 cut(s) 170, 1496
BsaWI WCCGGW 2 cut(s) 787, 1681
Bsc4I CCNNNNNNNGG 4 cut(s) 176, 193, 629, 1562
Bse118I RCCGGY 1 cut(s) 591
Bse1I ACTGG 8 cut(s) 393, 452, 979, 1112, 1151, 1188, 1196, 1330
Bse3DI GCAATG 2 cut(s) 570, 872
BseBI CCWGG 2 cut(s) 579, 1521
BseCI ATCGAT 1 cut(s) 529
BseDI CCNNGG 2 cut(s) 170, 1496
BseGI GGATG 3 cut(s) 445, 774, 937
BseLI CCNNNNNNNGG 4 cut(s) 176, 193, 629, 1562
BseMI GCAATG 2 cut(s) 570, 872
BseMII CTCAG 3 cut(s) 20, 795, 936
BseNI ACTGG 8 cut(s) 393, 452, 979, 1112, 1151, 1188, 1196, 1330
BseRI GAGGAG 1 cut(s) 276
BseSI GKGCMC 2 cut(s) 961, 1648
BseXI GCAGC 3 cut(s) 13, 241, 434
BsgI GTGCAG 1 cut(s) 345
BshFI GGCC 5 cut(s) 169, 462, 641, 673, 830
BshVI ATCGAT 1 cut(s) 529
BsiHKAI GWGCWC 2 cut(s) 961, 1648
BsiSI CCGG 3 cut(s) 592, 788, 1682
BslFI GGGAC 3 cut(s) 924, 1057, 1524
BslI CCNNNNNNNGG 4 cut(s) 176, 193, 629, 1562
BsmAI GTCTC 4 cut(s) 9, 25, 438, 943
BsmFI GGGAC 3 cut(s) 924, 1057, 1524
BsmI GAATGC 1 cut(s) 547
BsnI GGCC 5 cut(s) 169, 462, 641, 673, 830
Bsp1286I GDGCHC 2 cut(s) 961, 1648
Bsp1407I TGTACA 1 cut(s) 1657
Bsp143I GATC 7 cut(s) 526, 790, 970, 1155, 1246, 1450, 1550
Bsp1720I GCTNAGC 1 cut(s) 297
BspACI CCGC 2 cut(s) 411, 990
BspANI GGCC 5 cut(s) 169, 462, 641, 673, 830
BspCNI CTCAG 3 cut(s) 19, 796, 937
BspDI ATCGAT 1 cut(s) 529
BspLI GGNNCC 2 cut(s) 913, 1045
BspMI ACCTGC 2 cut(s) 317, 359
BspOI GCTAGC 1 cut(s) 51
BspPI GGATC 2 cut(s) 798, 1150
BsrDI GCAATG 2 cut(s) 570, 872
BsrFI RCCGGY 1 cut(s) 591
BsrGI TGTACA 1 cut(s) 1657
BsrI ACTGG 8 cut(s) 393, 452, 979, 1112, 1151, 1188, 1196, 1330
BssAI RCCGGY 1 cut(s) 591
BssECI CCNNGG 2 cut(s) 170, 1496
BssMI GATC 7 cut(s) 526, 790, 970, 1155, 1246, 1450, 1550
BssT1I CCWWGG 1 cut(s) 1496
Bst2UI CCWGG 2 cut(s) 579, 1521
Bst4CI ACNGT 3 cut(s) 911, 1048, 1516
Bst6I CTCTTC 2 cut(s) 271, 1046
BstAUI TGTACA 1 cut(s) 1657
BstC8I GCNNGC 4 cut(s) 49, 184, 708, 726
BstDEI CTNAG 5 cut(s) 6, 247, 297, 804, 945
BstF5I GGATG 3 cut(s) 445, 774, 937
BstKTI GATC 7 cut(s) 529, 793, 973, 1158, 1249, 1453, 1553
BstMAI GTCTC 4 cut(s) 9, 25, 438, 943
BstMBI GATC 7 cut(s) 526, 790, 970, 1155, 1246, 1450, 1550
BstMWI GCNNNNNNNGC 4 cut(s) 332, 341, 670, 1135
BstNI CCWGG 2 cut(s) 579, 1521
BstNSI RCATGY 2 cut(s) 1297, 1308
BstSCI CCNGG 2 cut(s) 577, 1519
BstSFI CTRYAG 2 cut(s) 133, 1446
BstSLI GKGCMC 2 cut(s) 961, 1648
BstV1I GCAGC 3 cut(s) 13, 241, 434
BstX2I RGATCY 2 cut(s) 1155, 1550
BstYI RGATCY 2 cut(s) 1155, 1550
Bsu15I ATCGAT 1 cut(s) 529
BsuRI GGCC 5 cut(s) 169, 462, 641, 673, 830
BsuTUI ATCGAT 1 cut(s) 529
BtgZI GCGATG 1 cut(s) 105
BtsCI GGATG 3 cut(s) 445, 774, 937
BtsI GCAGTG 2 cut(s) 542, 1387
BtsIMutI CAGTG 3 cut(s) 14, 542, 1387
BveI ACCTGC 2 cut(s) 317, 359
Cac8I GCNNGC 4 cut(s) 49, 184, 708, 726
CaiI CAGNNNCTG 1 cut(s) 502
Cfr10I RCCGGY 1 cut(s) 591
Cfr13I GGNCC 3 cut(s) 639, 829, 1044
ClaI ATCGAT 1 cut(s) 529
CsiI ACCWGGT 1 cut(s) 1519
Csp6I GTAC 5 cut(s) 451, 1061, 1477, 1517, 1658
CspCI CAANNNNNGTGG 2 cut(s) 1096, 1131
CviAII CATG 9 cut(s) 426, 820, 1078, 1294, 1305, 1377, 1481, 1697, 1710
CviQI GTAC 5 cut(s) 451, 1061, 1477, 1517, 1658
DdeI CTNAG 5 cut(s) 6, 247, 297, 804, 945
DpnI GATC 7 cut(s) 528, 792, 972, 1157, 1248, 1452, 1552
DpnII GATC 7 cut(s) 526, 790, 970, 1155, 1246, 1450, 1550
DraI TTTAAA 1 cut(s) 106
EaeI YGGCCR 1 cut(s) 671
Eam1104I CTCTTC 2 cut(s) 271, 1046
EarI CTCTTC 2 cut(s) 271, 1046
EciI GGCGGA 1 cut(s) 426
Eco130I CCWWGG 1 cut(s) 1496
Eco147I AGGCCT 1 cut(s) 462
Eco32I GATATC 2 cut(s) 1120, 1374
Eco47I GGWCC 1 cut(s) 1044
Eco57I CTGAAG 3 cut(s) 627, 881, 1253
EcoO109I RGGNCCY 1 cut(s) 829
EcoRII CCWGG 2 cut(s) 577, 1519
EcoRV GATATC 2 cut(s) 1120, 1374
EcoT14I CCWWGG 1 cut(s) 1496
EcoT22I ATGCAT 1 cut(s) 872
ErhI CCWWGG 1 cut(s) 1496
FaeI CATG 9 cut(s) 429, 823, 1081, 1297, 1308, 1380, 1484, 1700, 1713
FaqI GGGAC 3 cut(s) 924, 1057, 1524
FatI CATG 9 cut(s) 425, 819, 1077, 1293, 1304, 1376, 1480, 1696, 1709
FauNDI CATATG 2 cut(s) 1214, 1243
FbaI TGATCA 2 cut(s) 970, 1246
Fnu4HI GCNGC 3 cut(s) 27, 255, 423
FokI GGATG 3 cut(s) 452, 781, 944
Fsp4HI GCNGC 3 cut(s) 27, 255, 423
FspBI CTAG 2 cut(s) 48, 1559
GluI GCNGC 3 cut(s) 27, 255, 423
GsuI CTGGAG 2 cut(s) 1095, 1361
HaeIII GGCC 5 cut(s) 169, 462, 641, 673, 830
HapII CCGG 3 cut(s) 592, 788, 1682
Hin1II CATG 9 cut(s) 429, 823, 1081, 1297, 1308, 1380, 1484, 1700, 1713
HindIII AAGCTT 1 cut(s) 1127
HinfI GANTC 3 cut(s) 891, 951, 1385
HpaII CCGG 3 cut(s) 592, 788, 1682
HphI GGTGA 4 cut(s) 521, 1004, 1498, 1592
Hpy166II GTNNAC 5 cut(s) 959, 1210, 1507, 1529, 1646
Hpy188I TCNGA 6 cut(s) 278, 489, 498, 1001, 1390, 1726
Hpy188III TCNNGA 6 cut(s) 313, 899, 1011, 1168, 1433, 1675
Hpy8I GTNNAC 5 cut(s) 959, 1210, 1507, 1529, 1646
HpyAV CCTTC 6 cut(s) 159, 187, 301, 535, 905, 1610
HpyCH4III ACNGT 3 cut(s) 911, 1048, 1516
HpyF10VI GCNNNNNNNGC 4 cut(s) 332, 341, 670, 1135
HpyF3I CTNAG 5 cut(s) 6, 247, 297, 804, 945
Hsp92II CATG 9 cut(s) 429, 823, 1081, 1297, 1308, 1380, 1484, 1700, 1713
Ksp22I TGATCA 2 cut(s) 970, 1246
Kzo9I GATC 7 cut(s) 526, 790, 970, 1155, 1246, 1450, 1550
LmnI GCTCC 2 cut(s) 544, 1074
Lsp1109I GCAGC 3 cut(s) 13, 241, 434
LweI GCATC 7 cut(s) 60, 77, 82, 355, 651, 1081, 1390
MabI ACCWGGT 1 cut(s) 1519
MaeI CTAG 2 cut(s) 48, 1559
MaeIII GTNAC 2 cut(s) 796, 1300
MalI GATC 7 cut(s) 528, 792, 972, 1157, 1248, 1452, 1552
MboI GATC 7 cut(s) 526, 790, 970, 1155, 1246, 1450, 1550
MboII GAAGA 6 cut(s) 258, 463, 661, 1063, 1246, 1376
MfeI CAATTG 3 cut(s) 693, 963, 1653
MflI RGATCY 2 cut(s) 1155, 1550
MhlI GDGCHC 2 cut(s) 961, 1648
MlsI TGGCCA 1 cut(s) 673
MluNI TGGCCA 1 cut(s) 673
MlyI GAGTC 1 cut(s) 945
MnlI CCTC 8 cut(s) 165, 292, 297, 765, 799, 1281, 1555, 1618
Mox20I TGGCCA 1 cut(s) 673
Mph1103I ATGCAT 1 cut(s) 872
MroXI GAANNNNTTC 2 cut(s) 890, 1006
MscI TGGCCA 1 cut(s) 673
MseI TTAA 7 cut(s) 105, 143, 626, 843, 1005, 1277, 1735
Msp20I TGGCCA 1 cut(s) 673
MspI CCGG 3 cut(s) 592, 788, 1682
MspR9I CCNGG 2 cut(s) 579, 1521
MunI CAATTG 3 cut(s) 693, 963, 1653
Mva1269I GAATGC 1 cut(s) 547
MvaI CCWGG 2 cut(s) 579, 1521
MwoI GCNNNNNNNGC 4 cut(s) 332, 341, 670, 1135
NdeI CATATG 2 cut(s) 1214, 1243
NdeII GATC 7 cut(s) 526, 790, 970, 1155, 1246, 1450, 1550
NheI GCTAGC 1 cut(s) 47
NlaIII CATG 9 cut(s) 429, 823, 1081, 1297, 1308, 1380, 1484, 1700, 1713
NlaIV GGNNCC 2 cut(s) 913, 1045
NmeAIII GCCGAG 1 cut(s) 195
NmuCI GTSAC 1 cut(s) 796
NsiI ATGCAT 1 cut(s) 872
NspI RCATGY 2 cut(s) 1297, 1308
PceI AGGCCT 1 cut(s) 462
PciI ACATGT 2 cut(s) 1293, 1304
PctI GAATGC 1 cut(s) 547
PdmI GAANNNNTTC 2 cut(s) 890, 1006
PfeI GAWTC 2 cut(s) 891, 1385
PkrI GCNGC 3 cut(s) 28, 256, 424
PleI GAGTC 1 cut(s) 945
PpsI GAGTC 1 cut(s) 945
PscI ACATGT 2 cut(s) 1293, 1304
PshBI ATTAAT 1 cut(s) 1005
Psp6I CCWGG 2 cut(s) 577, 1519
PspGI CCWGG 2 cut(s) 577, 1519
PspN4I GGNNCC 2 cut(s) 913, 1045
PspPI GGNCC 3 cut(s) 639, 829, 1044
PstNI CAGNNNCTG 1 cut(s) 502
PsuI RGATCY 2 cut(s) 1155, 1550
RsaI GTAC 5 cut(s) 452, 1062, 1478, 1518, 1659
RsaNI GTAC 5 cut(s) 451, 1061, 1477, 1517, 1658
SaqAI TTAA 7 cut(s) 105, 143, 626, 843, 1005, 1277, 1735
SatI GCNGC 3 cut(s) 27, 255, 423
Sau3AI GATC 7 cut(s) 526, 790, 970, 1155, 1246, 1450, 1550
Sau96I GGNCC 3 cut(s) 639, 829, 1044
SchI GAGTC 1 cut(s) 945
ScrFI CCNGG 2 cut(s) 579, 1521
SduI GDGCHC 2 cut(s) 961, 1648
SexAI ACCWGGT 1 cut(s) 1519
SfaNI GCATC 7 cut(s) 60, 77, 82, 355, 651, 1081, 1390
SfcI CTRYAG 2 cut(s) 133, 1446
SinI GGWCC 1 cut(s) 1044
SmlI CTYRAG 2 cut(s) 34, 751
SmoI CTYRAG 2 cut(s) 34, 751
SseBI AGGCCT 1 cut(s) 462
SsiI CCGC 2 cut(s) 411, 990
SspI AATATT 3 cut(s) 356, 493, 1316
SspMI CTAG 2 cut(s) 48, 1559
StuI AGGCCT 1 cut(s) 462
StyD4I CCNGG 2 cut(s) 577, 1519
StyI CCWWGG 1 cut(s) 1496
TaaI ACNGT 3 cut(s) 911, 1048, 1516
TaqI TCGA 2 cut(s) 529, 793
TatI WGTACW 2 cut(s) 1060, 1657
TfiI GAWTC 2 cut(s) 891, 1385
Tru1I TTAA 7 cut(s) 105, 143, 626, 843, 1005, 1277, 1735
Tru9I TTAA 7 cut(s) 105, 143, 626, 843, 1005, 1277, 1735
TscAI CASTG 3 cut(s) 14, 542, 1387
TseFI GTSAC 1 cut(s) 796
TseI GCWGC 3 cut(s) 26, 254, 422
Tsp45I GTSAC 1 cut(s) 796
TspDTI ATGAA 4 cut(s) 90, 867, 1704, 1716
TspGWI ACGGA 1 cut(s) 1288
TspRI CASTG 3 cut(s) 14, 542, 1387
VneI GTGCAC 2 cut(s) 957, 1644
VpaK11BI GGWCC 1 cut(s) 1044
VspI ATTAAT 1 cut(s) 1005
XapI RAATTY 3 cut(s) 116, 1685, 1727
XceI RCATGY 2 cut(s) 1297, 1308
XcmI CCANNNNNNNNNTGG 1 cut(s) 1365
XmnI GAANNNNTTC 2 cut(s) 890, 1006
XspI CTAG 2 cut(s) 48, 1559
Zsp2I ATGCAT 1 cut(s) 872
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.