Prupe.1G194500_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
18383344 .. 18384108
765 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G194500.1

Sequence Viewer

Length: 765 bp
ATGGAGTTTTCTAAGACCTACTTGTTTGTGTTGCTCACCACTCTTCTCTTGCTGTCTTCTTCTTGTTTTGGTGATCAAGTGTCTGCAAATAATGATCTCAAGACTCTTGTTTCTTCATCAGTTCCATACTCAATGAAACAATCCACCAAATTTGCTGATCAACATCCTCTCCTCAAGTATAGGATCAAGATGCAGGTCCCTTCTGGCCCAAACCCTTTACACAACATATTGCTACCAAAGGTTGATGGTGCTAAAAATTATCATATCTTGAGGGAGGTTCCTTCGGGTTCGAATCCTTTACATCACAACATTCCCCCGCAGAAAAAGTTCGATGATCCAGCTAATCATCAAATCTTGAGGGAGGTTCCTTCGGGTTCGAATCCTTTACATCACAATATTCCCCCGCAGAAAAAGTTCGATGATCCAACTAATCATCAAATCTTGAGGGAGGTTCCTTCGGGTTCGAATCCTTTACATCACAACGTTCCCCCGCAGAAAAAGTTCGATGATCCAGCAAATCATCAAATCTTGAGAGAGGTTCCTTCGGGTTCGAATCCTTTACATCACAACGTTCCCCCGCTGAAAAAGTTAGATGATCCAGCAAACTTTTATCCCACGAGGCTTGTGCCAACTGGTCCAAATCGGGCAGAGTCTCCTGGGGAACCGCCTTCAAAAGTACTGTCTGCTCCGCTTCCGTCACCTTCACCTGCGAAAGCCGATCCTTTGAAGCCTCACACAAGACGCTTATTGGGTATTCCTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

255

Amino Acids

28.12

Weight (kDa)

9.54

Isoelectric Point (pI)

63.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029172)

Species Orthologous Gene IDs
prunus_persica Prupe.1G194500_v2.0.a1
pyrus_communis pycom04g03570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 715
Acc36I ACCTGC 2 cut(s) 184, 715
AciI CCGC 6 cut(s) 317, 404, 491, 578, 665, 689
AclI AACGTT 2 cut(s) 483, 570
AclWI GGATC 6 cut(s) 191, 329, 416, 503, 590, 713
AcsI RAATTY 1 cut(s) 149
AfaI GTAC 1 cut(s) 678
AgsI TTSAA 2 cut(s) 672, 727
AjnI CCWGG 1 cut(s) 655
AluBI AGCT 1 cut(s) 341
AluI AGCT 1 cut(s) 341
Alw26I GTCTC 1 cut(s) 657
AlwI GGATC 6 cut(s) 191, 329, 416, 503, 590, 713
AoxI GGCC 1 cut(s) 205
ApoI RAATTY 1 cut(s) 149
ArsI GACNNNNNNTTYG 2 cut(s) 665, 697
Asp700I GAANNNNTTC 3 cut(s) 326, 413, 500
AspS9I GGNCC 3 cut(s) 196, 206, 635
AsuHPI GGTGA 4 cut(s) 28, 83, 690, 696
AsuII TTCGAA 4 cut(s) 290, 377, 464, 551
AvaII GGWCC 2 cut(s) 196, 635
BauI CACGAG 1 cut(s) 616
BbsI GAAGAC 1 cut(s) 48
BccI CCATC 1 cut(s) 239
BcgI CGANNNNNNTGC 2 cut(s) 607, 641
BciT130I CCWGG 1 cut(s) 657
BclI TGATCA 2 cut(s) 73, 157
BcoDI GTCTC 1 cut(s) 657
BfuAI ACCTGC 2 cut(s) 184, 715
BmcAI AGTACT 1 cut(s) 678
Bme1390I CCNGG 1 cut(s) 657
Bme18I GGWCC 2 cut(s) 196, 635
BmgT120I GGNCC 3 cut(s) 196, 206, 635
BmiI GGNNCC 6 cut(s) 198, 279, 366, 453, 540, 663
BmrFI CCNGG 1 cut(s) 657
BmsI GCATC 1 cut(s) 180
BpiI GAAGAC 1 cut(s) 48
Bpu14I TTCGAA 4 cut(s) 290, 377, 464, 551
BpuEI CTTGAG 6 cut(s) 83, 158, 289, 376, 463, 550
BsaBI GATNNNNATC 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 656
BsaXI ACNNNNNCTCC 2 cut(s) 153, 183
Bse1I ACTGG 1 cut(s) 637
Bse8I GATNNNNATC 1 cut(s) 162
BseBI CCWGG 1 cut(s) 657
BseDI CCNNGG 1 cut(s) 656
BseGI GGATG 1 cut(s) 163
BseJI GATNNNNATC 1 cut(s) 162
BseNI ACTGG 1 cut(s) 637
BseRI GAGGAG 1 cut(s) 161
BshFI GGCC 1 cut(s) 207
BslFI GGGAC 1 cut(s) 182
BsmAI GTCTC 1 cut(s) 657
BsmFI GGGAC 1 cut(s) 182
BsnI GGCC 1 cut(s) 207
Bsp119I TTCGAA 4 cut(s) 290, 377, 464, 551
Bsp143I GATC 9 cut(s) 73, 94, 157, 183, 334, 421, 508, 595, 718
BspACI CCGC 6 cut(s) 317, 404, 491, 578, 665, 689
BspANI GGCC 1 cut(s) 207
BspLI GGNNCC 6 cut(s) 198, 279, 366, 453, 540, 663
BspMI ACCTGC 2 cut(s) 184, 715
BspPI GGATC 6 cut(s) 191, 329, 416, 503, 590, 713
BspT104I TTCGAA 4 cut(s) 290, 377, 464, 551
BsrI ACTGG 1 cut(s) 637
BssECI CCNNGG 1 cut(s) 656
BssMI GATC 9 cut(s) 73, 94, 157, 183, 334, 421, 508, 595, 718
BssSI CACGAG 1 cut(s) 616
Bst2BI CACGAG 1 cut(s) 616
Bst2UI CCWGG 1 cut(s) 657
Bst4CI ACNGT 1 cut(s) 681
Bst6I CTCTTC 1 cut(s) 48
BstBI TTCGAA 4 cut(s) 290, 377, 464, 551
BstDEI CTNAG 1 cut(s) 12
BstF5I GGATG 1 cut(s) 163
BstKTI GATC 9 cut(s) 76, 97, 160, 186, 337, 424, 511, 598, 721
BstMAI GTCTC 1 cut(s) 657
BstMBI GATC 9 cut(s) 73, 94, 157, 183, 334, 421, 508, 595, 718
BstNI CCWGG 1 cut(s) 657
BstSCI CCNGG 1 cut(s) 655
BstV2I GAAGAC 1 cut(s) 48
BsuRI GGCC 1 cut(s) 207
BtsCI GGATG 1 cut(s) 163
BveI ACCTGC 2 cut(s) 184, 715
Cfr13I GGNCC 3 cut(s) 196, 206, 635
CseI GACGC 1 cut(s) 750
Csp6I GTAC 1 cut(s) 677
CspCI CAANNNNNGTGG 4 cut(s) 133, 168, 604, 639
CviJI RGCY 5 cut(s) 207, 341, 622, 716, 730
CviKI_1 RGCY 5 cut(s) 207, 341, 622, 716, 730
CviQI GTAC 1 cut(s) 677
DdeI CTNAG 1 cut(s) 12
DpnI GATC 9 cut(s) 75, 96, 159, 185, 336, 423, 510, 597, 720
DpnII GATC 9 cut(s) 73, 94, 157, 183, 334, 421, 508, 595, 718
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
Eco47I GGWCC 2 cut(s) 196, 635
EcoO109I RGGNCCY 1 cut(s) 196
EcoRII CCWGG 1 cut(s) 655
FaiI YATR 6 cut(s) 127, 180, 227, 264, 761, 763
FalI AAGNNNNNCTT 1 cut(s) 37
FaqI GGGAC 1 cut(s) 182
FauI CCCGC 4 cut(s) 324, 411, 498, 585
FbaI TGATCA 2 cut(s) 73, 157
FokI GGATG 1 cut(s) 150
HaeIII GGCC 1 cut(s) 207
HgaI GACGC 1 cut(s) 750
HinfI GANTC 6 cut(s) 103, 292, 379, 466, 553, 650
HphI GGTGA 4 cut(s) 28, 83, 690, 696
Hpy188III TCNNGA 6 cut(s) 100, 187, 268, 355, 442, 529
HpyAV CCTTC 7 cut(s) 210, 291, 378, 465, 552, 678, 711
HpyCH4III ACNGT 1 cut(s) 681
HpyCH4IV ACGT 2 cut(s) 483, 570
HpyCH4V TGCA 2 cut(s) 86, 193
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 2 cut(s) 483, 570
Ksp22I TGATCA 2 cut(s) 73, 157
Kzo9I GATC 9 cut(s) 73, 94, 157, 183, 334, 421, 508, 595, 718
LmnI GCTCC 1 cut(s) 691
LpnPI CCDG 9 cut(s) 179, 189, 351, 525, 612, 618, 642, 669, 720
LweI GCATC 1 cut(s) 180
MaeII ACGT 2 cut(s) 483, 570
MaeIII GTNAC 1 cut(s) 696
MalI GATC 9 cut(s) 75, 96, 159, 185, 336, 423, 510, 597, 720
MboI GATC 9 cut(s) 73, 94, 157, 183, 334, 421, 508, 595, 718
MboII GAAGA 4 cut(s) 35, 48, 51, 105
MluCI AATT 2 cut(s) 149, 256
MlyI GAGTC 2 cut(s) 97, 659
MmeI TCCRAC 1 cut(s) 449
MroXI GAANNNNTTC 3 cut(s) 326, 413, 500
MspA1I CMGCKG 1 cut(s) 580
MspR9I CCNGG 1 cut(s) 657
MvaI CCWGG 1 cut(s) 657
NdeII GATC 9 cut(s) 73, 94, 157, 183, 334, 421, 508, 595, 718
NlaIV GGNNCC 6 cut(s) 198, 279, 366, 453, 540, 663
NmuCI GTSAC 1 cut(s) 696
NspV TTCGAA 4 cut(s) 290, 377, 464, 551
PaqCI CACCTGC 1 cut(s) 715
PdmI GAANNNNTTC 3 cut(s) 326, 413, 500
PfeI GAWTC 4 cut(s) 292, 379, 466, 553
PleI GAGTC 2 cut(s) 97, 658
PpsI GAGTC 2 cut(s) 97, 658
PpuMI RGGWCCY 1 cut(s) 196
Psp1406I AACGTT 2 cut(s) 483, 570
Psp5II RGGWCCY 1 cut(s) 196
Psp6I CCWGG 1 cut(s) 655
PspGI CCWGG 1 cut(s) 655
PspN4I GGNNCC 6 cut(s) 198, 279, 366, 453, 540, 663
PspPI GGNCC 3 cut(s) 196, 206, 635
PspPPI RGGWCCY 1 cut(s) 196
RsaI GTAC 1 cut(s) 678
RsaNI GTAC 1 cut(s) 677
Sau3AI GATC 9 cut(s) 73, 94, 157, 183, 334, 421, 508, 595, 718
Sau96I GGNCC 3 cut(s) 196, 206, 635
ScaI AGTACT 1 cut(s) 678
SchI GAGTC 2 cut(s) 97, 659
ScrFI CCNGG 1 cut(s) 657
SfaNI GCATC 1 cut(s) 180
SfuI TTCGAA 4 cut(s) 290, 377, 464, 551
SinI GGWCC 2 cut(s) 196, 635
SmlI CTYRAG 6 cut(s) 98, 173, 268, 355, 442, 529
SmoI CTYRAG 6 cut(s) 98, 173, 268, 355, 442, 529
Sse9I AATT 2 cut(s) 149, 256
SsiI CCGC 6 cut(s) 317, 404, 491, 578, 665, 689
SspI AATATT 1 cut(s) 397
StyD4I CCNGG 1 cut(s) 655
TaaI ACNGT 1 cut(s) 681
TaiI ACGT 2 cut(s) 486, 573
TaqI TCGA 7 cut(s) 290, 330, 377, 417, 464, 504, 551
TasI AATT 2 cut(s) 149, 256
TatI WGTACW 1 cut(s) 676
TfiI GAWTC 4 cut(s) 292, 379, 466, 553
TseFI GTSAC 1 cut(s) 696
Tsp45I GTSAC 1 cut(s) 696
TspDTI ATGAA 2 cut(s) 105, 149
TspGWI ACGGA 1 cut(s) 684
VpaK11BI GGWCC 2 cut(s) 196, 635
XapI RAATTY 1 cut(s) 149
XmnI GAANNNNTTC 3 cut(s) 326, 413, 500
ZrmI AGTACT 1 cut(s) 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.