pycom04g03570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0029172
Physical Location & Seq
Reverse (-)
3177692 .. 3178412
721 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g03570.2

Sequence Viewer

Length: 630 bp
ATGGAGTTTTCTAAGACCCACATGTTTGTTACTTGCCTTCTCTTTCTATCTTCTTCTTGTTTTGGCGATCAAGGATCCCCAAACAAACAGTCCACCAAACTTGCTGAGCAACATCGACTCTTGAAGTATTGGATCAAGAGGCAGGTTCCTACCGGTCCAAACCCTCTACATCACTTCGTCCAACCGCCTGTAGAAGTGTTGGATGATCCTGCAAATTATGAATCAAAGAGGCAGGTTCCTACCGGTCCAAATCCTCTACATCACTTCGTCCAACCGCCCGTACAAGTGTTGGATGATCCTGCAAATTATGAATCAAAGAGGCAGGTTCCTACCGGTCCAAACCCTCTACATCACTTCGTCCAACCGCCTGTAGAAGTGTTGGATGAACTTCCAAATTATGATCTTAATATGAGGCTTGTGCCTTCTGGGCATGAAGAGTCTCCTGAAGAGCCCCCTTCCAAGGTATATACTCCACCACCACCATCTTCACGTGCAAATTATGATCTTATGAGGCTTGTGCCTTCTGGTCCAAATCATGAAGAGTCTCCTGAGGAACTGCCATCACCTTCTTCGGCCACGGAAGCCAATGTTCATCGGAAACCTCACTCAAGACGCTTATTGGATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

23.61

Weight (kDa)

6.04

Isoelectric Point (pI)

73.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029172)

Species Orthologous Gene IDs
prunus_persica Prupe.1G194500_v2.0.a1
pyrus_communis pycom04g03570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 133, 223, 313
AciI CCGC 3 cut(s) 185, 275, 365
AclWI GGATC 5 cut(s) 69, 82, 140, 200, 290
AcoI YGGCCR 1 cut(s) 573
AcuI CTGAAG 1 cut(s) 465
AcvI CACGTG 1 cut(s) 491
AfaI GTAC 1 cut(s) 282
AfiI CCNNNNNNNGG 1 cut(s) 460
AflIII ACRYGT 1 cut(s) 21
AgeI ACCGGT 3 cut(s) 152, 242, 332
AgsI TTSAA 1 cut(s) 124
Alw26I GTCTC 2 cut(s) 444, 549
AlwI GGATC 5 cut(s) 69, 82, 140, 200, 290
AoxI GGCC 1 cut(s) 573
ArsI GACNNNNNNTTYG 2 cut(s) 74, 106
AsiGI ACCGGT 3 cut(s) 152, 242, 332
AspS9I GGNCC 4 cut(s) 155, 245, 335, 527
AsuHPI GGTGA 1 cut(s) 555
AvaII GGWCC 4 cut(s) 155, 245, 335, 527
AxyI CCTNAGG 1 cut(s) 549
BamHI GGATCC 1 cut(s) 74
BanII GRGCYC 1 cut(s) 453
BbrPI CACGTG 1 cut(s) 491
BccI CCATC 2 cut(s) 490, 568
BcoDI GTCTC 2 cut(s) 444, 549
BfmI CTRYAG 2 cut(s) 189, 369
BfuAI ACCTGC 3 cut(s) 133, 223, 313
BglI GCCNNNNNGGC 1 cut(s) 427
BlpI GCTNAGC 1 cut(s) 105
Bme18I GGWCC 4 cut(s) 155, 245, 335, 527
BmgT120I GGNCC 4 cut(s) 155, 245, 335, 527
BmiI GGNNCC 4 cut(s) 76, 147, 237, 327
Bpu1102I GCTNAGC 1 cut(s) 105
BpuEI CTTGAG 1 cut(s) 592
BsaAI YACGTR 1 cut(s) 491
BsaJI CCNNGG 2 cut(s) 459, 576
BsaWI WCCGGW 3 cut(s) 152, 242, 332
Bsc4I CCNNNNNNNGG 1 cut(s) 460
Bse118I RCCGGY 3 cut(s) 152, 242, 332
Bse21I CCTNAGG 1 cut(s) 549
BseDI CCNNGG 2 cut(s) 459, 576
BseGI GGATG 3 cut(s) 208, 298, 388
BseLI CCNNNNNNNGG 1 cut(s) 460
BseMII CTCAG 2 cut(s) 96, 540
BshFI GGCC 1 cut(s) 575
BshTI ACCGGT 3 cut(s) 152, 242, 332
BsiSI CCGG 3 cut(s) 153, 243, 333
BslI CCNNNNNNNGG 1 cut(s) 460
BsmAI GTCTC 2 cut(s) 444, 549
BsnI GGCC 1 cut(s) 575
Bsp1286I GDGCHC 1 cut(s) 453
Bsp143I GATC 7 cut(s) 67, 74, 132, 205, 295, 400, 502
Bsp1720I GCTNAGC 1 cut(s) 105
BspACI CCGC 3 cut(s) 185, 275, 365
BspANI GGCC 1 cut(s) 575
BspCNI CTCAG 2 cut(s) 97, 541
BspHI TCATGA 1 cut(s) 535
BspLI GGNNCC 4 cut(s) 76, 147, 237, 327
BspMI ACCTGC 3 cut(s) 133, 223, 313
BspPI GGATC 5 cut(s) 69, 82, 140, 200, 290
BspQI GCTCTTC 1 cut(s) 441
BsrFI RCCGGY 3 cut(s) 152, 242, 332
BssAI RCCGGY 3 cut(s) 152, 242, 332
BssECI CCNNGG 2 cut(s) 459, 576
BssMI GATC 7 cut(s) 67, 74, 132, 205, 295, 400, 502
BssT1I CCWWGG 1 cut(s) 459
Bst4CI ACNGT 1 cut(s) 90
Bst6I CTCTTC 3 cut(s) 429, 441, 534
BstBAI YACGTR 1 cut(s) 491
BstDEI CTNAG 3 cut(s) 12, 105, 549
BstDSI CCRYGG 1 cut(s) 576
BstF5I GGATG 3 cut(s) 208, 298, 388
BstKTI GATC 7 cut(s) 70, 77, 135, 208, 298, 403, 505
BstMAI GTCTC 2 cut(s) 444, 549
BstMBI GATC 7 cut(s) 67, 74, 132, 205, 295, 400, 502
BstMWI GCNNNNNNNGC 2 cut(s) 427, 581
BstNSI RCATGY 1 cut(s) 25
BstSFI CTRYAG 2 cut(s) 189, 369
BstX2I RGATCY 1 cut(s) 74
BstYI RGATCY 1 cut(s) 74
Bsu36I CCTNAGG 1 cut(s) 549
BsuRI GGCC 1 cut(s) 575
BtgI CCRYGG 1 cut(s) 576
BtsCI GGATG 3 cut(s) 208, 298, 388
BveI ACCTGC 3 cut(s) 133, 223, 313
CciI TCATGA 1 cut(s) 535
Cfr10I RCCGGY 3 cut(s) 152, 242, 332
Cfr13I GGNCC 4 cut(s) 155, 245, 335, 527
CseI GACGC 1 cut(s) 621
Csp6I GTAC 1 cut(s) 281
CspAI ACCGGT 3 cut(s) 152, 242, 332
CspCI CAANNNNNGTGG 2 cut(s) 82, 117
CviAII CATG 3 cut(s) 22, 431, 536
CviJI RGCY 5 cut(s) 415, 451, 514, 575, 584
CviKI_1 RGCY 5 cut(s) 415, 451, 514, 575, 584
CviQI GTAC 1 cut(s) 281
DdeI CTNAG 3 cut(s) 12, 105, 549
DpnI GATC 7 cut(s) 69, 76, 134, 207, 297, 402, 504
DpnII GATC 7 cut(s) 67, 74, 132, 205, 295, 400, 502
EaeI YGGCCR 1 cut(s) 573
Eam1104I CTCTTC 3 cut(s) 429, 441, 534
EarI CTCTTC 3 cut(s) 429, 441, 534
Eco130I CCWWGG 1 cut(s) 459
Eco24I GRGCYC 1 cut(s) 453
Eco47I GGWCC 4 cut(s) 155, 245, 335, 527
Eco57I CTGAAG 1 cut(s) 465
Eco72I CACGTG 1 cut(s) 491
Eco81I CCTNAGG 1 cut(s) 549
EcoT14I CCWWGG 1 cut(s) 459
EcoT38I GRGCYC 1 cut(s) 453
ErhI CCWWGG 1 cut(s) 459
FaeI CATG 3 cut(s) 25, 434, 539
FatI CATG 3 cut(s) 21, 430, 535
FokI GGATG 3 cut(s) 215, 305, 395
FriOI GRGCYC 1 cut(s) 453
HaeIII GGCC 1 cut(s) 575
HapII CCGG 3 cut(s) 153, 243, 333
HgaI GACGC 1 cut(s) 621
Hin1II CATG 3 cut(s) 25, 434, 539
HinfI GANTC 5 cut(s) 117, 221, 311, 437, 542
HpaII CCGG 3 cut(s) 153, 243, 333
HphI GGTGA 1 cut(s) 555
Hpy166II GTNNAC 1 cut(s) 93
Hpy188I TCNGA 1 cut(s) 597
Hpy188III TCNNGA 6 cut(s) 121, 136, 443, 536, 548, 609
Hpy8I GTNNAC 1 cut(s) 93
HpyAV CCTTC 5 cut(s) 47, 432, 465, 531, 576
HpyCH4III ACNGT 1 cut(s) 90
HpyCH4IV ACGT 1 cut(s) 490
HpyCH4V TGCA 3 cut(s) 212, 302, 494
HpyF10VI GCNNNNNNNGC 2 cut(s) 427, 581
HpyF3I CTNAG 3 cut(s) 12, 105, 549
HpySE526I ACGT 1 cut(s) 490
Hsp92II CATG 3 cut(s) 25, 434, 539
Kzo9I GATC 7 cut(s) 67, 74, 132, 205, 295, 400, 502
LguI GCTCTTC 1 cut(s) 441
MaeII ACGT 1 cut(s) 490
MaeIII GTNAC 1 cut(s) 28
MalI GATC 7 cut(s) 69, 76, 134, 207, 297, 402, 504
MboI GATC 7 cut(s) 67, 74, 132, 205, 295, 400, 502
MboII GAAGA 7 cut(s) 42, 45, 446, 458, 477, 551, 561
MflI RGATCY 1 cut(s) 74
MhlI GDGCHC 1 cut(s) 453
MluCI AATT 5 cut(s) 214, 304, 394, 496, 625
MlyI GAGTC 3 cut(s) 111, 446, 551
MmeI TCCRAC 6 cut(s) 180, 205, 270, 295, 360, 385
MseI TTAA 2 cut(s) 405, 628
MspI CCGG 3 cut(s) 153, 243, 333
MwoI GCNNNNNNNGC 2 cut(s) 427, 581
NdeII GATC 7 cut(s) 67, 74, 132, 205, 295, 400, 502
NlaIII CATG 3 cut(s) 25, 434, 539
NlaIV GGNNCC 4 cut(s) 76, 147, 237, 327
NspI RCATGY 1 cut(s) 25
PagI TCATGA 1 cut(s) 535
PciI ACATGT 1 cut(s) 21
PciSI GCTCTTC 1 cut(s) 441
PfeI GAWTC 2 cut(s) 221, 311
PinAI ACCGGT 3 cut(s) 152, 242, 332
PleI GAGTC 3 cut(s) 111, 445, 550
PmaCI CACGTG 1 cut(s) 491
PmlI CACGTG 1 cut(s) 491
PpsI GAGTC 3 cut(s) 111, 445, 550
Ppu21I YACGTR 1 cut(s) 491
PscI ACATGT 1 cut(s) 21
PspCI CACGTG 1 cut(s) 491
PspN4I GGNNCC 4 cut(s) 76, 147, 237, 327
PspPI GGNCC 4 cut(s) 155, 245, 335, 527
PsuI RGATCY 1 cut(s) 74
RsaI GTAC 1 cut(s) 282
RsaNI GTAC 1 cut(s) 281
SapI GCTCTTC 1 cut(s) 441
SaqAI TTAA 2 cut(s) 405, 628
Sau3AI GATC 7 cut(s) 67, 74, 132, 205, 295, 400, 502
Sau96I GGNCC 4 cut(s) 155, 245, 335, 527
SchI GAGTC 3 cut(s) 111, 446, 551
SduI GDGCHC 1 cut(s) 453
SetI ASST 7 cut(s) 147, 237, 327, 465, 493, 568, 604
SfcI CTRYAG 2 cut(s) 189, 369
SinI GGWCC 4 cut(s) 155, 245, 335, 527
SmlI CTYRAG 1 cut(s) 607
SmoI CTYRAG 1 cut(s) 607
Sse9I AATT 5 cut(s) 214, 304, 394, 496, 625
SsiI CCGC 3 cut(s) 185, 275, 365
StyI CCWWGG 1 cut(s) 459
TaaI ACNGT 1 cut(s) 90
TaiI ACGT 1 cut(s) 493
TaqI TCGA 1 cut(s) 115
TasI AATT 5 cut(s) 214, 304, 394, 496, 625
TfiI GAWTC 2 cut(s) 221, 311
Tru1I TTAA 2 cut(s) 405, 628
Tru9I TTAA 2 cut(s) 405, 628
TspDTI ATGAA 6 cut(s) 234, 324, 399, 447, 552, 581
TspGWI ACGGA 1 cut(s) 593
VpaK11BI GGWCC 4 cut(s) 155, 245, 335, 527
XceI RCATGY 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.