Prupe.1G297700_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
29359707 .. 29361682
1976 bp
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UTR
Exon/CDS
Intron
Prupe.1G297700.1

Sequence Viewer

Length: 372 bp
ATGGCGGTGAAAGCACTCCTCGGCACTCTGCTGGTGGTATTATCAAGCCCACCACCGATCCAGTTCACTACAATACTAGAGTTCATCTTGTGTGTGTGTTTGGCAACGACCACTCTTTTCATCCAAGTTCCCCATGAATACATAAACGAAGCAGCAATTCTGACTATACTATTTAAGGGCCTTCCATCCATCTTTTGTGTTTTCGGCTTCTCCATAATCTTAGCTTTCTCCGGTGCATTTACCGCGTTGATGATCATCCGCAACAAGCCCGCCATTGCAAGGATCTTTGGACTCTGTTCCATGGCTTCCATGTCTTCAGCTATGGCTCTGCTGATGTGGGCCATTTACAATAAGCTGGCCGCAACCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.29

Weight (kDa)

8.84

Isoelectric Point (pI)

38.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024600)

Species Orthologous Gene IDs
prunus_persica Prupe.1G297700_v2.0.a1
rosa_samantha Rh2CG609400 Rh2DG657400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 245
AciI CCGC 5 cut(s) 5, 243, 259, 270, 360
AclWI GGATC 2 cut(s) 52, 290
AcoI YGGCCR 1 cut(s) 357
AcuI CTGAAG 1 cut(s) 300
AfiI CCNNNNNNNGG 1 cut(s) 279
AluBI AGCT 3 cut(s) 224, 320, 355
AluI AGCT 3 cut(s) 224, 320, 355
AlwI GGATC 2 cut(s) 52, 290
AoxI GGCC 3 cut(s) 178, 339, 357
ApeKI GCWGC 1 cut(s) 152
AspS9I GGNCC 2 cut(s) 178, 339
AsuHPI GGTGA 1 cut(s) 19
BbsI GAAGAC 1 cut(s) 306
BbvI GCAGC 1 cut(s) 164
BccI CCATC 2 cut(s) 193, 197
BclI TGATCA 1 cut(s) 252
BfaI CTAG 1 cut(s) 77
BisI GCNGC 2 cut(s) 153, 360
BlsI GCNGC 2 cut(s) 154, 361
BmgT120I GGNCC 2 cut(s) 178, 339
BpiI GAAGAC 1 cut(s) 306
BsaBI GATNNNNATC 1 cut(s) 254
BsaJI CCNNGG 2 cut(s) 19, 300
BsaWI WCCGGW 1 cut(s) 230
Bsc4I CCNNNNNNNGG 1 cut(s) 279
Bse1I ACTGG 1 cut(s) 61
Bse3DI GCAATG 1 cut(s) 273
Bse8I GATNNNNATC 1 cut(s) 254
BseDI CCNNGG 2 cut(s) 19, 300
BseGI GGATG 3 cut(s) 120, 185, 255
BseJI GATNNNNATC 1 cut(s) 254
BseLI CCNNNNNNNGG 1 cut(s) 279
BseMI GCAATG 1 cut(s) 273
BseNI ACTGG 1 cut(s) 61
BseRI GAGGAG 1 cut(s) 8
BseXI GCAGC 1 cut(s) 164
Bsh1236I CGCG 1 cut(s) 245
BshFI GGCC 3 cut(s) 180, 341, 359
BsiSI CCGG 1 cut(s) 231
BslI CCNNNNNNNGG 1 cut(s) 279
BsnI GGCC 3 cut(s) 180, 341, 359
Bsp143I GATC 3 cut(s) 57, 252, 282
Bsp19I CCATGG 1 cut(s) 300
BspACI CCGC 5 cut(s) 5, 243, 259, 270, 360
BspANI GGCC 3 cut(s) 180, 341, 359
BspFNI CGCG 1 cut(s) 245
BspPI GGATC 2 cut(s) 52, 290
BsrDI GCAATG 1 cut(s) 273
BsrI ACTGG 1 cut(s) 61
BssECI CCNNGG 2 cut(s) 19, 300
BssMI GATC 3 cut(s) 57, 252, 282
BssT1I CCWWGG 1 cut(s) 300
BstC8I GCNNGC 2 cut(s) 270, 357
BstDEI CTNAG 1 cut(s) 220
BstDSI CCRYGG 1 cut(s) 300
BstF5I GGATG 3 cut(s) 120, 185, 255
BstFNI CGCG 1 cut(s) 245
BstKTI GATC 3 cut(s) 60, 255, 285
BstMBI GATC 3 cut(s) 57, 252, 282
BstMWI GCNNNNNNNGC 2 cut(s) 11, 242
BstUI CGCG 1 cut(s) 245
BstV1I GCAGC 1 cut(s) 164
BstV2I GAAGAC 1 cut(s) 306
BstX2I RGATCY 1 cut(s) 282
BstYI RGATCY 1 cut(s) 282
BsuRI GGCC 3 cut(s) 180, 341, 359
BtgI CCRYGG 1 cut(s) 300
BtsCI GGATG 3 cut(s) 120, 185, 255
Cac8I GCNNGC 2 cut(s) 270, 357
Cfr13I GGNCC 2 cut(s) 178, 339
CviAII CATG 3 cut(s) 134, 301, 310
DdeI CTNAG 1 cut(s) 220
DpnI GATC 3 cut(s) 59, 254, 284
DpnII GATC 3 cut(s) 57, 252, 282
EaeI YGGCCR 1 cut(s) 357
Eco130I CCWWGG 1 cut(s) 300
Eco57I CTGAAG 1 cut(s) 300
EcoO109I RGGNCCY 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 300
FaeI CATG 3 cut(s) 137, 304, 313
FaiI YATR 7 cut(s) 135, 143, 167, 215, 302, 311, 323
FatI CATG 3 cut(s) 133, 300, 309
FauI CCCGC 1 cut(s) 277
FbaI TGATCA 1 cut(s) 252
Fnu4HI GCNGC 2 cut(s) 153, 360
FokI GGATG 3 cut(s) 107, 172, 242
Fsp4HI GCNGC 2 cut(s) 153, 360
FspBI CTAG 1 cut(s) 77
GluI GCNGC 2 cut(s) 153, 360
HaeIII GGCC 3 cut(s) 180, 341, 359
HapII CCGG 1 cut(s) 231
Hin1II CATG 3 cut(s) 137, 304, 313
HinfI GANTC 1 cut(s) 291
HpaII CCGG 1 cut(s) 231
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 1 cut(s) 66
Hpy188I TCNGA 1 cut(s) 162
Hpy8I GTNNAC 1 cut(s) 66
HpyAV CCTTC 1 cut(s) 191
HpyCH4V TGCA 2 cut(s) 236, 278
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 242
HpyF3I CTNAG 1 cut(s) 220
Hsp92II CATG 3 cut(s) 137, 304, 313
Ksp22I TGATCA 1 cut(s) 252
Kzo9I GATC 3 cut(s) 57, 252, 282
LpnPI CCDG 4 cut(s) 17, 74, 244, 341
Lsp1109I GCAGC 1 cut(s) 164
MaeI CTAG 1 cut(s) 77
MalI GATC 3 cut(s) 59, 254, 284
MboI GATC 3 cut(s) 57, 252, 282
MboII GAAGA 1 cut(s) 306
MflI RGATCY 1 cut(s) 282
MluCI AATT 1 cut(s) 156
MlyI GAGTC 1 cut(s) 285
MnlI CCTC 1 cut(s) 29
MseI TTAA 2 cut(s) 174, 370
MspI CCGG 1 cut(s) 231
MvnI CGCG 1 cut(s) 245
MwoI GCNNNNNNNGC 2 cut(s) 11, 242
NcoI CCATGG 1 cut(s) 300
NdeII GATC 3 cut(s) 57, 252, 282
NlaIII CATG 3 cut(s) 137, 304, 313
PkrI GCNGC 2 cut(s) 154, 361
PleI GAGTC 1 cut(s) 285
PpsI GAGTC 1 cut(s) 285
PspPI GGNCC 2 cut(s) 178, 339
PsuI RGATCY 1 cut(s) 282
SaqAI TTAA 2 cut(s) 174, 370
SatI GCNGC 2 cut(s) 153, 360
Sau3AI GATC 3 cut(s) 57, 252, 282
Sau96I GGNCC 2 cut(s) 178, 339
SchI GAGTC 1 cut(s) 285
SetI ASST 3 cut(s) 226, 322, 357
Sse9I AATT 1 cut(s) 156
SsiI CCGC 5 cut(s) 5, 243, 259, 270, 360
SspMI CTAG 1 cut(s) 77
StyI CCWWGG 1 cut(s) 300
TasI AATT 1 cut(s) 156
TauI GCSGC 1 cut(s) 362
Tru1I TTAA 2 cut(s) 174, 370
Tru9I TTAA 2 cut(s) 174, 370
TseI GCWGC 1 cut(s) 152
TspDTI ATGAA 3 cut(s) 73, 109, 150
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.