Rh2CG609400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0024600
Physical Location & Seq
Reverse (-)
78492943 .. 78493317
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG609400.1

Sequence Viewer

Length: 375 bp
ATGAAGGTCGCGCAAACGCCTGTACGGTATCAGCAGCATAAGCATAACGACGATCAGCCGAGATTGCAACATGGTGGGATTTTCACGGCAATGATAAGTTGTATTATCGTTGGATGCTTTGCAACAGCCACCGTTCTCATCCAAAGTCCACATGAATATATTAACGGAGCTCCTATTCCGACAGTACCATTTAAAGGCCTCCCATCTACCTTCTACGCCTTCATCATCTCGATCATCTTAGCTTTCTCCTGTGCTTTCAGTGCGTTGATGATGTTGCCGGGAAGGCCCAATATTGCAACGATTAGCGGATACTGTTCTATACTTTCTATGGCTTCAGCTATGGCTCTGCTGATATGGGCAATGTACTCGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.49

Weight (kDa)

8.8

Isoelectric Point (pI)

51.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0024600)

Species Orthologous Gene IDs
prunus_persica Prupe.1G297700_v2.0.a1
rosa_samantha Rh2CG609400 Rh2DG657400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 11
AciI CCGC 1 cut(s) 306
AcuI CTGAAG 1 cut(s) 318
AfaI GTAC 3 cut(s) 24, 186, 365
AfiI CCNNNNNNNGG 1 cut(s) 194
AluBI AGCT 3 cut(s) 170, 242, 338
AluI AGCT 3 cut(s) 170, 242, 338
Alw21I GWGCWC 1 cut(s) 172
AoxI GGCC 2 cut(s) 196, 284
ApeKI GCWGC 1 cut(s) 34
AspLEI GCGC 1 cut(s) 13
AspS9I GGNCC 1 cut(s) 285
AsuC2I CCSGG 1 cut(s) 279
BanII GRGCYC 1 cut(s) 172
Bbv12I GWGCWC 1 cut(s) 172
BbvI GCAGC 1 cut(s) 46
BccI CCATC 1 cut(s) 211
BceAI ACGGC 1 cut(s) 102
BcgI CGANNNNNNTGC 1 cut(s) 348
BciVI GTATCC 1 cut(s) 302
BcnI CCSGG 1 cut(s) 279
BfuI GTATCC 1 cut(s) 302
BglI GCCNNNNNGGC 1 cut(s) 283
BisI GCNGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 36
Bme1390I CCNGG 1 cut(s) 279
BmgT120I GGNCC 1 cut(s) 285
BmrFI CCNGG 1 cut(s) 279
BmsI GCATC 1 cut(s) 104
BpuMI CCSGG 1 cut(s) 279
Bsc4I CCNNNNNNNGG 1 cut(s) 194
Bse3DI GCAATG 2 cut(s) 96, 366
BseGI GGATG 2 cut(s) 119, 138
BseLI CCNNNNNNNGG 1 cut(s) 194
BseMI GCAATG 2 cut(s) 96, 366
BseXI GCAGC 1 cut(s) 46
Bsh1236I CGCG 1 cut(s) 11
BshFI GGCC 2 cut(s) 198, 286
BsiHKAI GWGCWC 1 cut(s) 172
BsiSI CCGG 1 cut(s) 278
BslI CCNNNNNNNGG 1 cut(s) 194
BsnI GGCC 2 cut(s) 198, 286
Bsp1286I GDGCHC 1 cut(s) 172
Bsp143I GATC 2 cut(s) 52, 231
BspACI CCGC 1 cut(s) 306
BspANI GGCC 2 cut(s) 198, 286
BspFNI CGCG 1 cut(s) 11
BsrDI GCAATG 2 cut(s) 96, 366
BssMI GATC 2 cut(s) 52, 231
Bst4CI ACNGT 4 cut(s) 27, 133, 184, 314
BstDEI CTNAG 1 cut(s) 238
BstF5I GGATG 2 cut(s) 119, 138
BstFNI CGCG 1 cut(s) 11
BstHHI GCGC 1 cut(s) 13
BstKTI GATC 2 cut(s) 55, 234
BstMBI GATC 2 cut(s) 52, 231
BstMWI GCNNNNNNNGC 4 cut(s) 40, 64, 260, 283
BstSCI CCNGG 1 cut(s) 277
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 1 cut(s) 46
BsuI GTATCC 1 cut(s) 302
BsuRI GGCC 2 cut(s) 198, 286
BtsCI GGATG 2 cut(s) 119, 138
BtsIMutI CAGTG 1 cut(s) 265
CfoI GCGC 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 285
Csp6I GTAC 3 cut(s) 23, 185, 364
CviAII CATG 2 cut(s) 71, 152
CviJI RGCY 9 cut(s) 58, 128, 170, 198, 242, 286, 332, 338, 344
CviKI_1 RGCY 9 cut(s) 58, 128, 170, 198, 242, 286, 332, 338, 344
CviQI GTAC 3 cut(s) 23, 185, 364
DdeI CTNAG 1 cut(s) 238
DpnI GATC 2 cut(s) 54, 233
DpnII GATC 2 cut(s) 52, 231
DraI TTTAAA 1 cut(s) 193
Ecl136II GAGCTC 1 cut(s) 170
Eco147I AGGCCT 1 cut(s) 198
Eco24I GRGCYC 1 cut(s) 172
Eco53kI GAGCTC 1 cut(s) 170
Eco57I CTGAAG 1 cut(s) 318
EcoICRI GAGCTC 1 cut(s) 170
EcoT38I GRGCYC 1 cut(s) 172
FaeI CATG 2 cut(s) 74, 155
FatI CATG 2 cut(s) 70, 151
Fnu4HI GCNGC 1 cut(s) 35
FokI GGATG 2 cut(s) 125, 126
FriOI GRGCYC 1 cut(s) 172
Fsp4HI GCNGC 1 cut(s) 35
GlaI GCGC 1 cut(s) 12
GluI GCNGC 1 cut(s) 35
HaeIII GGCC 2 cut(s) 198, 286
HapII CCGG 1 cut(s) 278
HhaI GCGC 1 cut(s) 13
Hin1II CATG 2 cut(s) 74, 155
Hin6I GCGC 1 cut(s) 11
HinP1I GCGC 1 cut(s) 11
HpaII CCGG 1 cut(s) 278
Hpy166II GTNNAC 1 cut(s) 149
Hpy188I TCNGA 1 cut(s) 180
Hpy188III TCNNGA 1 cut(s) 229
Hpy8I GTNNAC 1 cut(s) 149
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 3 cut(s) 220, 229, 276
HpyCH4III ACNGT 4 cut(s) 27, 133, 184, 314
HpyCH4V TGCA 3 cut(s) 67, 122, 296
HpyF10VI GCNNNNNNNGC 4 cut(s) 40, 64, 260, 283
HpyF3I CTNAG 1 cut(s) 238
Hsp92II CATG 2 cut(s) 74, 155
HspAI GCGC 1 cut(s) 11
Kzo9I GATC 2 cut(s) 52, 231
LmnI GCTCC 2 cut(s) 167, 175
LpnPI CCDG 3 cut(s) 33, 262, 291
Lsp1109I GCAGC 1 cut(s) 46
LweI GCATC 1 cut(s) 104
MalI GATC 2 cut(s) 54, 233
MboI GATC 2 cut(s) 52, 231
MhlI GDGCHC 1 cut(s) 172
MmeI TCCRAC 2 cut(s) 91, 203
MnlI CCTC 1 cut(s) 209
MseI TTAA 2 cut(s) 162, 192
MslI CAYNNNNRTG 1 cut(s) 89
MspI CCGG 1 cut(s) 278
MspR9I CCNGG 1 cut(s) 279
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 4 cut(s) 40, 64, 260, 283
NciI CCSGG 1 cut(s) 279
NdeII GATC 2 cut(s) 52, 231
NlaIII CATG 2 cut(s) 74, 155
NmeAIII GCCGAG 1 cut(s) 84
PceI AGGCCT 1 cut(s) 198
PkrI GCNGC 1 cut(s) 36
Psp124BI GAGCTC 1 cut(s) 172
PspPI GGNCC 1 cut(s) 285
RsaI GTAC 3 cut(s) 24, 186, 365
RsaNI GTAC 3 cut(s) 23, 185, 364
RseI CAYNNNNRTG 1 cut(s) 89
SacI GAGCTC 1 cut(s) 172
SaqAI TTAA 2 cut(s) 162, 192
SatI GCNGC 1 cut(s) 35
Sau3AI GATC 2 cut(s) 52, 231
Sau96I GGNCC 1 cut(s) 285
ScrFI CCNGG 1 cut(s) 279
SduI GDGCHC 1 cut(s) 172
SetI ASST 5 cut(s) 9, 172, 212, 244, 340
SfaNI GCATC 1 cut(s) 104
SmiMI CAYNNNNRTG 1 cut(s) 89
SseBI AGGCCT 1 cut(s) 198
SsiI CCGC 1 cut(s) 306
SspI AATATT 1 cut(s) 292
SstI GAGCTC 1 cut(s) 172
StuI AGGCCT 1 cut(s) 198
StyD4I CCNGG 1 cut(s) 277
TaaI ACNGT 4 cut(s) 27, 133, 184, 314
TaqI TCGA 1 cut(s) 230
TatI WGTACW 1 cut(s) 363
Tru1I TTAA 2 cut(s) 162, 192
Tru9I TTAA 2 cut(s) 162, 192
TscAI CASTG 1 cut(s) 265
TseI GCWGC 1 cut(s) 34
TspDTI ATGAA 3 cut(s) 17, 168, 211
TspGWI ACGGA 1 cut(s) 180
TspRI CASTG 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.