Prupe.1G399000_v2.0.a1

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0026646
Physical Location & Seq
Forward (+)
35283764 .. 35286316
2553 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G399000.1

Sequence Viewer

Length: 642 bp
ATGCATATACCAAGAGAGAAAACCAAGAGAAGCAAAATAAGCAGAGGGAAAAAAGCTGACTGGCCCTTCATCTCTGTCTCTGAGAACAAGTATGAAAAATATGTACTCAGCGGTCACAGTGCTAATAACCTGCAAGCTCTCCTCGATCTCTATGTCTTCGTTTATAACAATCTTAAGGCTAATAGTCATCCCTTCCACACACTGAAGACTCATACCTATAATTTTGTCTTTGCACGTCTGAAGCAGCGTTGGAGACTTAAGGGACCAATGCAATTAGTTGCTTTAGACAATGGGTTATTCATTGTTCGTTTTGTTCTTGAGGAGGATTTGTTGTATGTGTTAACTGGGGGTCCTTGGGTAGTAGCATGGCAGTATGTTGCTGTTAAAAAACGGAGACCTGACAAGGCTACGTATAGGGGGGTTCTGGTTAAAGTTCAAGCTAAACCTTCTGCTTGGAAAAGTCAACAGCTTTCTATGGCTAGAAGAATCACTTTAATCCAATCTGTTGCTTCTTCTATGCCTCTATATACCATGCAAACGGCTAAGCTACCTCAAGCTCTTTGTGAAGATCTTGACAAATCTTCTAAAAGTTTAGGCAGAGGATGGTGTACAAAACCACAGTGCATGCAGTTGATTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 Exo_endo_phos_2 RVT_1 zf-CCHC_4

Protein Analysis

214

Amino Acids

24.59

Weight (kDa)

10.18

Isoelectric Point (pI)

40.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0026646)

Species Orthologous Gene IDs
prunus_persica Prupe.1G399000_v2.0.a1
rosa_multiflora Rmu_sc0002750.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 165
Acc36I ACCTGC 1 cut(s) 138
AciI CCGC 1 cut(s) 111
AcuI CTGAAG 2 cut(s) 224, 260
AfaI GTAC 2 cut(s) 105, 610
AflII CTTAAG 2 cut(s) 173, 257
AgsI TTSAA 1 cut(s) 437
AjiI CACGTC 1 cut(s) 236
AluBI AGCT 6 cut(s) 56, 137, 440, 469, 547, 557
AluI AGCT 6 cut(s) 56, 137, 440, 469, 547, 557
Alw26I GTCTC 3 cut(s) 82, 247, 388
AoxI GGCC 1 cut(s) 62
ApeKI GCWGC 1 cut(s) 244
AspS9I GGNCC 3 cut(s) 63, 263, 350
AvaII GGWCC 2 cut(s) 263, 350
BbsI GAAGAC 2 cut(s) 148, 212
BbvI GCAGC 1 cut(s) 256
BccI CCATC 1 cut(s) 597
BceAI ACGGC 1 cut(s) 555
BcoDI GTCTC 3 cut(s) 82, 247, 388
BfaI CTAG 1 cut(s) 480
BfrI CTTAAG 2 cut(s) 173, 257
BfuAI ACCTGC 1 cut(s) 138
BglII AGATCT 1 cut(s) 568
BisI GCNGC 1 cut(s) 245
BlpI GCTNAGC 1 cut(s) 543
BlsI GCNGC 1 cut(s) 246
Bme18I GGWCC 2 cut(s) 263, 350
BmgBI CACGTC 1 cut(s) 236
BmgT120I GGNCC 3 cut(s) 63, 263, 350
BmiI GGNNCC 2 cut(s) 264, 351
BmrI ACTGGG 1 cut(s) 354
BmuI ACTGGG 1 cut(s) 354
BpiI GAAGAC 2 cut(s) 148, 212
Bpu1102I GCTNAGC 1 cut(s) 543
BpuEI CTTGAG 2 cut(s) 338, 537
BsaAI YACGTR 1 cut(s) 411
BsaI GGTCTC 1 cut(s) 388
BsaJI CCNNGG 1 cut(s) 353
BsaXI ACNNNNNCTCC 2 cut(s) 314, 344
Bse1I ACTGG 2 cut(s) 65, 349
BseDI CCNNGG 1 cut(s) 353
BseGI GGATG 2 cut(s) 187, 608
BseMII CTCAG 2 cut(s) 72, 121
BseNI ACTGG 2 cut(s) 65, 349
BseRI GAGGAG 2 cut(s) 131, 335
BseXI GCAGC 1 cut(s) 256
BshFI GGCC 1 cut(s) 64
BslFI GGGAC 1 cut(s) 276
BsmAI GTCTC 3 cut(s) 82, 247, 388
BsmFI GGGAC 1 cut(s) 276
BsnI GGCC 1 cut(s) 64
Bso31I GGTCTC 1 cut(s) 388
Bsp1407I TGTACA 1 cut(s) 608
Bsp143I GATC 2 cut(s) 145, 568
Bsp1720I GCTNAGC 1 cut(s) 543
BspACI CCGC 1 cut(s) 111
BspANI GGCC 1 cut(s) 64
BspCNI CTCAG 2 cut(s) 73, 120
BspLI GGNNCC 2 cut(s) 264, 351
BspMI ACCTGC 1 cut(s) 138
BspTI CTTAAG 2 cut(s) 173, 257
BspTNI GGTCTC 1 cut(s) 388
BsrGI TGTACA 1 cut(s) 608
BsrI ACTGG 2 cut(s) 65, 349
BssECI CCNNGG 1 cut(s) 353
BssMI GATC 2 cut(s) 145, 568
BssT1I CCWWGG 1 cut(s) 353
Bst4CI ACNGT 2 cut(s) 119, 621
BstAFI CTTAAG 2 cut(s) 173, 257
BstAUI TGTACA 1 cut(s) 608
BstBAI YACGTR 1 cut(s) 411
BstC8I GCNNGC 2 cut(s) 135, 626
BstDEI CTNAG 3 cut(s) 81, 107, 543
BstF5I GGATG 2 cut(s) 187, 608
BstKTI GATC 2 cut(s) 148, 571
BstMAI GTCTC 3 cut(s) 82, 247, 388
BstMBI GATC 2 cut(s) 145, 568
BstMWI GCNNNNNNNGC 1 cut(s) 39
BstNSI RCATGY 1 cut(s) 628
BstSNI TACGTA 1 cut(s) 411
BstV1I GCAGC 1 cut(s) 256
BstV2I GAAGAC 2 cut(s) 148, 212
BstX2I RGATCY 1 cut(s) 568
BstYI RGATCY 1 cut(s) 568
BsuRI GGCC 1 cut(s) 64
BtrI CACGTC 1 cut(s) 236
BtsCI GGATG 2 cut(s) 187, 608
BtsIMutI CAGTG 3 cut(s) 124, 200, 626
BveI ACCTGC 1 cut(s) 138
Cac8I GCNNGC 2 cut(s) 135, 626
Cfr13I GGNCC 3 cut(s) 63, 263, 350
Csp6I GTAC 2 cut(s) 104, 609
CviAII CATG 3 cut(s) 366, 532, 625
CviQI GTAC 2 cut(s) 104, 609
DdeI CTNAG 3 cut(s) 81, 107, 543
DpnI GATC 2 cut(s) 147, 570
DpnII GATC 2 cut(s) 145, 568
Eco105I TACGTA 1 cut(s) 411
Eco130I CCWWGG 1 cut(s) 353
Eco31I GGTCTC 1 cut(s) 388
Eco47I GGWCC 2 cut(s) 263, 350
Eco57I CTGAAG 2 cut(s) 224, 260
EcoO109I RGGNCCY 1 cut(s) 350
EcoT14I CCWWGG 1 cut(s) 353
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 353
FaeI CATG 3 cut(s) 369, 535, 628
FalI AAGNNNNNCTT 2 cut(s) 475, 507
FaqI GGGAC 1 cut(s) 276
FatI CATG 3 cut(s) 365, 531, 624
Fnu4HI GCNGC 1 cut(s) 245
FokI GGATG 2 cut(s) 174, 615
Fsp4HI GCNGC 1 cut(s) 245
FspBI CTAG 1 cut(s) 480
GluI GCNGC 1 cut(s) 245
HaeIII GGCC 1 cut(s) 64
Hin1II CATG 3 cut(s) 369, 535, 628
HincII GTYRAC 2 cut(s) 342, 464
HindII GTYRAC 2 cut(s) 342, 464
HinfI GANTC 2 cut(s) 208, 486
HpaI GTTAAC 1 cut(s) 342
Hpy166II GTNNAC 3 cut(s) 342, 464, 609
Hpy188I TCNGA 2 cut(s) 82, 240
Hpy188III TCNNGA 2 cut(s) 317, 572
Hpy8I GTNNAC 3 cut(s) 342, 464, 609
HpyAV CCTTC 3 cut(s) 76, 202, 456
HpyCH4III ACNGT 2 cut(s) 119, 621
HpyCH4IV ACGT 2 cut(s) 235, 410
HpyCH4V TGCA 7 cut(s) 4, 133, 233, 271, 535, 624, 628
HpyF10VI GCNNNNNNNGC 1 cut(s) 39
HpyF3I CTNAG 3 cut(s) 81, 107, 543
HpySE526I ACGT 2 cut(s) 235, 410
Hsp92II CATG 3 cut(s) 369, 535, 628
KspAI GTTAAC 1 cut(s) 342
Kzo9I GATC 2 cut(s) 145, 568
LpnPI CCDG 5 cut(s) 46, 143, 330, 410, 411
Lsp1109I GCAGC 1 cut(s) 256
MaeI CTAG 1 cut(s) 480
MaeII ACGT 2 cut(s) 235, 410
MaeIII GTNAC 1 cut(s) 113
MalI GATC 2 cut(s) 147, 570
MboI GATC 2 cut(s) 145, 568
MboII GAAGA 6 cut(s) 148, 217, 495, 504, 573, 578
MflI RGATCY 1 cut(s) 568
MluCI AATT 2 cut(s) 220, 272
MlyI GAGTC 1 cut(s) 202
MmeI TCCRAC 1 cut(s) 230
MnlI CCTC 7 cut(s) 38, 152, 313, 316, 531, 561, 593
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 6 cut(s) 174, 258, 341, 384, 429, 494
MspA1I CMGCKG 1 cut(s) 111
MspCI CTTAAG 2 cut(s) 173, 257
MwoI GCNNNNNNNGC 1 cut(s) 39
NdeII GATC 2 cut(s) 145, 568
NlaIII CATG 3 cut(s) 369, 535, 628
NlaIV GGNNCC 2 cut(s) 264, 351
NmuCI GTSAC 1 cut(s) 113
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 628
PaeI GCATGC 1 cut(s) 628
PfeI GAWTC 1 cut(s) 486
PkrI GCNGC 1 cut(s) 246
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
Ppu21I YACGTR 1 cut(s) 411
PpuMI RGGWCCY 1 cut(s) 350
PsiI TTATAA 1 cut(s) 165
Psp5II RGGWCCY 1 cut(s) 350
PspN4I GGNNCC 2 cut(s) 264, 351
PspPI GGNCC 3 cut(s) 63, 263, 350
PspPPI RGGWCCY 1 cut(s) 350
PsuI RGATCY 1 cut(s) 568
RsaI GTAC 2 cut(s) 105, 610
RsaNI GTAC 2 cut(s) 104, 609
SaqAI TTAA 6 cut(s) 174, 258, 341, 384, 429, 494
SatI GCNGC 1 cut(s) 245
Sau3AI GATC 2 cut(s) 145, 568
Sau96I GGNCC 3 cut(s) 63, 263, 350
SchI GAGTC 1 cut(s) 202
SinI GGWCC 2 cut(s) 263, 350
SmlI CTYRAG 4 cut(s) 173, 257, 317, 552
SmoI CTYRAG 4 cut(s) 173, 257, 317, 552
SnaBI TACGTA 1 cut(s) 411
SphI GCATGC 1 cut(s) 628
Sse9I AATT 2 cut(s) 220, 272
SsiI CCGC 1 cut(s) 111
SspMI CTAG 1 cut(s) 480
StyI CCWWGG 1 cut(s) 353
TaaI ACNGT 2 cut(s) 119, 621
TaiI ACGT 2 cut(s) 238, 413
TaqI TCGA 1 cut(s) 144
TasI AATT 2 cut(s) 220, 272
TatI WGTACW 2 cut(s) 103, 608
TfiI GAWTC 1 cut(s) 486
Tru1I TTAA 6 cut(s) 174, 258, 341, 384, 429, 494
Tru9I TTAA 6 cut(s) 174, 258, 341, 384, 429, 494
TscAI CASTG 3 cut(s) 124, 207, 626
TseFI GTSAC 1 cut(s) 113
TseI GCWGC 1 cut(s) 244
Tsp45I GTSAC 1 cut(s) 113
TspDTI ATGAA 3 cut(s) 58, 108, 289
TspGWI ACGGA 1 cut(s) 406
TspRI CASTG 3 cut(s) 124, 207, 626
Vha464I CTTAAG 2 cut(s) 173, 257
VpaK11BI GGWCC 2 cut(s) 263, 350
XceI RCATGY 1 cut(s) 628
XspI CTAG 1 cut(s) 480
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.