Prupe.1G466500_v2.0.a1

VAMP-like protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
38907619 .. 38907993
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G466500.1

Sequence Viewer

Length: 375 bp
ATGGGTTCGATTCAAAATACCGTTTACTATTGTTGTGTATCAAGGGGTAATTGGATCATTTATGTATACAGTGGTGGAGATGGTGAAATTGAGAACTTGGCTACTTTGTGCTTGGAAAAGACGACTCCTTTTCTTAGGTGGTATTTTGAGACCGTGGGTAAAAGGACTTATGGGTTCCTAATTGAAGATGGGTATATTTATTTCACAATTGTTGATGAGAGTTTGGGAAACCCTGGTGTTCTTCAGTTTCTAGAGCATTTGAGAGACGAATTCAAGAAGATAGCCAGGAAGGGTTCTAGGGGAAATTTTTTGGTGTTCACAAGGATTGGGTTGCGGCAATGGAGGGTTGTGGAGGAAGGGGAGGATTGTGGATGA

Protein Analysis

125

Amino Acids

14.33

Weight (kDa)

5.43

Isoelectric Point (pI)

32.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028975)

Species Orthologous Gene IDs
prunus_persica Prupe.1G466500_v2.0.a1 Prupe.8G086200_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 66
AciI CCGC 1 cut(s) 334
AclWI GGATC 1 cut(s) 62
AcsI RAATTY 2 cut(s) 269, 304
AcuI CTGAAG 1 cut(s) 227
AgsI TTSAA 3 cut(s) 14, 185, 274
AjnI CCWGG 2 cut(s) 232, 284
Alw26I GTCTC 2 cut(s) 143, 258
AlwI GGATC 1 cut(s) 62
ApoI RAATTY 2 cut(s) 269, 304
AsuHPI GGTGA 1 cut(s) 95
BccI CCATC 2 cut(s) 74, 182
BciT130I CCWGG 2 cut(s) 234, 286
BcoDI GTCTC 2 cut(s) 143, 258
BfaI CTAG 2 cut(s) 251, 297
BisI GCNGC 1 cut(s) 335
BlsI GCNGC 1 cut(s) 336
Bme1390I CCNGG 2 cut(s) 234, 286
BmiI GGNNCC 1 cut(s) 176
BmrFI CCNGG 2 cut(s) 234, 286
BsaI GGTCTC 1 cut(s) 143
BsaJI CCNNGG 2 cut(s) 153, 232
Bse3DI GCAATG 1 cut(s) 344
BseBI CCWGG 2 cut(s) 234, 286
BseDI CCNNGG 2 cut(s) 153, 232
BseMI GCAATG 1 cut(s) 344
BsmAI GTCTC 2 cut(s) 143, 258
BsmBI CGTCTC 1 cut(s) 258
Bso31I GGTCTC 1 cut(s) 143
Bsp143I GATC 1 cut(s) 54
BspACI CCGC 1 cut(s) 334
BspLI GGNNCC 1 cut(s) 176
BspPI GGATC 1 cut(s) 62
BspTNI GGTCTC 1 cut(s) 143
BsrDI GCAATG 1 cut(s) 344
BssECI CCNNGG 2 cut(s) 153, 232
BssMI GATC 1 cut(s) 54
BssNAI GTATAC 1 cut(s) 67
Bst1107I GTATAC 1 cut(s) 67
Bst2UI CCWGG 2 cut(s) 234, 286
Bst4CI ACNGT 3 cut(s) 22, 71, 154
BstDEI CTNAG 1 cut(s) 134
BstDSI CCRYGG 1 cut(s) 153
BstKTI GATC 1 cut(s) 57
BstMAI GTCTC 2 cut(s) 143, 258
BstMBI GATC 1 cut(s) 54
BstNI CCWGG 2 cut(s) 234, 286
BstSCI CCNGG 2 cut(s) 232, 284
BstZ17I GTATAC 1 cut(s) 67
BtgI CCRYGG 1 cut(s) 153
BtsIMutI CAGTG 1 cut(s) 76
CviJI RGCY 2 cut(s) 101, 284
CviKI_1 RGCY 2 cut(s) 101, 284
DdeI CTNAG 1 cut(s) 134
DpnI GATC 1 cut(s) 56
DpnII GATC 1 cut(s) 54
Eco31I GGTCTC 1 cut(s) 143
Eco57I CTGAAG 1 cut(s) 227
EcoRI GAATTC 1 cut(s) 269
EcoRII CCWGG 2 cut(s) 232, 284
Esp3I CGTCTC 1 cut(s) 258
FaiI YATR 4 cut(s) 63, 67, 171, 195
FblI GTMKAC 1 cut(s) 66
Fnu4HI GCNGC 1 cut(s) 335
Fsp4HI GCNGC 1 cut(s) 335
FspBI CTAG 2 cut(s) 251, 297
GluI GCNGC 1 cut(s) 335
HinfI GANTC 2 cut(s) 10, 124
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 3 cut(s) 25, 67, 318
Hpy188III TCNNGA 2 cut(s) 251, 274
Hpy8I GTNNAC 3 cut(s) 25, 67, 318
HpyAV CCTTC 2 cut(s) 283, 350
HpyCH4III ACNGT 3 cut(s) 22, 71, 154
HpyF3I CTNAG 1 cut(s) 134
Kzo9I GATC 1 cut(s) 54
LpnPI CCDG 4 cut(s) 219, 246, 271, 298
MaeI CTAG 2 cut(s) 251, 297
MalI GATC 1 cut(s) 56
MboI GATC 1 cut(s) 54
MboII GAAGA 3 cut(s) 197, 233, 289
MfeI CAATTG 1 cut(s) 207
MluCI AATT 6 cut(s) 49, 87, 180, 207, 269, 304
MlyI GAGTC 1 cut(s) 118
MnlI CCTC 3 cut(s) 336, 346, 355
MspR9I CCNGG 2 cut(s) 234, 286
MunI CAATTG 1 cut(s) 207
MvaI CCWGG 2 cut(s) 234, 286
NdeII GATC 1 cut(s) 54
NlaIV GGNNCC 1 cut(s) 176
PfeI GAWTC 1 cut(s) 10
PkrI GCNGC 1 cut(s) 336
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
Psp6I CCWGG 2 cut(s) 232, 284
PspGI CCWGG 2 cut(s) 232, 284
PspN4I GGNNCC 1 cut(s) 176
SatI GCNGC 1 cut(s) 335
Sau3AI GATC 1 cut(s) 54
SchI GAGTC 1 cut(s) 118
ScrFI CCNGG 2 cut(s) 234, 286
SetI ASST 1 cut(s) 140
Sse9I AATT 6 cut(s) 49, 87, 180, 207, 269, 304
SsiI CCGC 1 cut(s) 334
SspMI CTAG 2 cut(s) 251, 297
StyD4I CCNGG 2 cut(s) 232, 284
TaaI ACNGT 3 cut(s) 22, 71, 154
TaqI TCGA 1 cut(s) 8
TasI AATT 6 cut(s) 49, 87, 180, 207, 269, 304
TauI GCSGC 1 cut(s) 337
TfiI GAWTC 1 cut(s) 10
TscAI CASTG 1 cut(s) 76
TspRI CASTG 1 cut(s) 76
XapI RAATTY 2 cut(s) 269, 304
XbaI TCTAGA 1 cut(s) 250
XmiI GTMKAC 1 cut(s) 66
XspI CTAG 2 cut(s) 251, 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.