Prupe.8G086200_v2.0.a1

VAMP-like protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
11915396 .. 11915769
374 bp
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UTR
Exon/CDS
Intron
Prupe.8G086200.1

Sequence Viewer

Length: 336 bp
ATGGGTTCGATTCAAAATACCATTTACTACTGTTGTGTATCAAGGGGTAATCGGATCCTTTATGTATACAGTGGTGGAGATGAAGACTCCTTTCATATGTGGTATTTTGAGACCATGGGTAAAAGGACTTATGGGTTCCTAATTGAAGATGGGTATATTTATTTCACAATTGTTGATGAGAGTTTGGGAAACCTTGGTGTTCTTCAGTTTCTAGAGCATTTGAGAGACGAATTCAAGAAGGTAGCCAGGAAGGGTTCCAGGGGAAATTTTTTGTTGTTCGCAAAGATTGGGTTGCGGCAATGGAGGGTTGTGGAGGAAGGGAAGGATTGTAGATGA

Protein Analysis

112

Amino Acids

13.02

Weight (kDa)

7.7

Isoelectric Point (pI)

24.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028975)

Species Orthologous Gene IDs
prunus_persica Prupe.1G466500_v2.0.a1 Prupe.8G086200_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 66
AciI CCGC 1 cut(s) 295
AclWI GGATC 2 cut(s) 49, 62
AcsI RAATTY 2 cut(s) 230, 265
AcuI CTGAAG 1 cut(s) 188
AgsI TTSAA 3 cut(s) 14, 146, 235
AjnI CCWGG 2 cut(s) 245, 257
Alw26I GTCTC 2 cut(s) 104, 219
AlwI GGATC 2 cut(s) 49, 62
ApoI RAATTY 2 cut(s) 230, 265
BamHI GGATCC 1 cut(s) 54
BbsI GAAGAC 1 cut(s) 90
BccI CCATC 1 cut(s) 143
BciT130I CCWGG 2 cut(s) 247, 259
BcoDI GTCTC 2 cut(s) 104, 219
BfaI CTAG 1 cut(s) 212
BisI GCNGC 1 cut(s) 296
BlsI GCNGC 1 cut(s) 297
Bme1390I CCNGG 2 cut(s) 247, 259
BmiI GGNNCC 3 cut(s) 56, 137, 256
BmrFI CCNGG 2 cut(s) 247, 259
BpiI GAAGAC 1 cut(s) 90
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 3 cut(s) 114, 193, 258
Bse3DI GCAATG 1 cut(s) 305
BseBI CCWGG 2 cut(s) 247, 259
BseDI CCNNGG 3 cut(s) 114, 193, 258
BseMI GCAATG 1 cut(s) 305
BsmAI GTCTC 2 cut(s) 104, 219
BsmBI CGTCTC 1 cut(s) 219
Bso31I GGTCTC 1 cut(s) 104
Bsp143I GATC 1 cut(s) 54
Bsp19I CCATGG 1 cut(s) 114
BspACI CCGC 1 cut(s) 295
BspLI GGNNCC 3 cut(s) 56, 137, 256
BspPI GGATC 2 cut(s) 49, 62
BspTNI GGTCTC 1 cut(s) 104
BsrDI GCAATG 1 cut(s) 305
BssECI CCNNGG 3 cut(s) 114, 193, 258
BssMI GATC 1 cut(s) 54
BssNAI GTATAC 1 cut(s) 67
BssT1I CCWWGG 2 cut(s) 114, 193
Bst1107I GTATAC 1 cut(s) 67
Bst2UI CCWGG 2 cut(s) 247, 259
Bst4CI ACNGT 2 cut(s) 32, 71
BstDSI CCRYGG 1 cut(s) 114
BstKTI GATC 1 cut(s) 57
BstMAI GTCTC 2 cut(s) 104, 219
BstMBI GATC 1 cut(s) 54
BstNI CCWGG 2 cut(s) 247, 259
BstSCI CCNGG 2 cut(s) 245, 257
BstV2I GAAGAC 1 cut(s) 90
BstX2I RGATCY 1 cut(s) 54
BstYI RGATCY 1 cut(s) 54
BstZ17I GTATAC 1 cut(s) 67
BtgI CCRYGG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 76
CviAII CATG 1 cut(s) 115
CviJI RGCY 1 cut(s) 245
CviKI_1 RGCY 1 cut(s) 245
DpnI GATC 1 cut(s) 56
DpnII GATC 1 cut(s) 54
Eco130I CCWWGG 2 cut(s) 114, 193
Eco31I GGTCTC 1 cut(s) 104
Eco57I CTGAAG 1 cut(s) 188
EcoRI GAATTC 1 cut(s) 230
EcoRII CCWGG 2 cut(s) 245, 257
EcoT14I CCWWGG 2 cut(s) 114, 193
ErhI CCWWGG 2 cut(s) 114, 193
Esp3I CGTCTC 1 cut(s) 219
FaeI CATG 1 cut(s) 118
FaiI YATR 7 cut(s) 63, 67, 96, 98, 116, 132, 156
FatI CATG 1 cut(s) 114
FauNDI CATATG 1 cut(s) 96
FblI GTMKAC 1 cut(s) 66
Fnu4HI GCNGC 1 cut(s) 296
Fsp4HI GCNGC 1 cut(s) 296
FspBI CTAG 1 cut(s) 212
GluI GCNGC 1 cut(s) 296
Hin1II CATG 1 cut(s) 118
HinfI GANTC 2 cut(s) 10, 86
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 1 cut(s) 54
Hpy188III TCNNGA 2 cut(s) 212, 235
Hpy8I GTNNAC 1 cut(s) 67
HpyAV CCTTC 4 cut(s) 232, 244, 311, 316
HpyCH4III ACNGT 2 cut(s) 32, 71
Hsp92II CATG 1 cut(s) 118
Kzo9I GATC 1 cut(s) 54
LpnPI CCDG 4 cut(s) 232, 244, 259, 271
MaeI CTAG 1 cut(s) 212
MalI GATC 1 cut(s) 56
MboI GATC 1 cut(s) 54
MboII GAAGA 3 cut(s) 95, 158, 194
MfeI CAATTG 1 cut(s) 168
MflI RGATCY 1 cut(s) 54
MluCI AATT 4 cut(s) 141, 168, 230, 265
MlyI GAGTC 1 cut(s) 80
MnlI CCTC 2 cut(s) 297, 307
MspR9I CCNGG 2 cut(s) 247, 259
MunI CAATTG 1 cut(s) 168
MvaI CCWGG 2 cut(s) 247, 259
NcoI CCATGG 1 cut(s) 114
NdeI CATATG 1 cut(s) 96
NdeII GATC 1 cut(s) 54
NlaIII CATG 1 cut(s) 118
NlaIV GGNNCC 3 cut(s) 56, 137, 256
PfeI GAWTC 1 cut(s) 10
PkrI GCNGC 1 cut(s) 297
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
Psp6I CCWGG 2 cut(s) 245, 257
PspGI CCWGG 2 cut(s) 245, 257
PspN4I GGNNCC 3 cut(s) 56, 137, 256
PsuI RGATCY 1 cut(s) 54
SatI GCNGC 1 cut(s) 296
Sau3AI GATC 1 cut(s) 54
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 2 cut(s) 247, 259
SetI ASST 2 cut(s) 195, 243
SgeI CNNG 9 cut(s) 54, 127, 206, 224, 247, 258, 259, 270, 271
Sse9I AATT 4 cut(s) 141, 168, 230, 265
SsiI CCGC 1 cut(s) 295
SspMI CTAG 1 cut(s) 212
StyD4I CCNGG 2 cut(s) 245, 257
StyI CCWWGG 2 cut(s) 114, 193
TaaI ACNGT 2 cut(s) 32, 71
TaqI TCGA 1 cut(s) 8
TasI AATT 4 cut(s) 141, 168, 230, 265
TauI GCSGC 1 cut(s) 298
TfiI GAWTC 1 cut(s) 10
TscAI CASTG 1 cut(s) 76
TspDTI ATGAA 2 cut(s) 83, 96
TspRI CASTG 1 cut(s) 76
XapI RAATTY 2 cut(s) 230, 265
XbaI TCTAGA 1 cut(s) 211
XmiI GTMKAC 1 cut(s) 66
XspI CTAG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.