Prupe.1G496100_v2.0.a1

PHD finger protein MALE MEIOCYTE DEATH

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0019306
Physical Location & Seq
Forward (+)
41141422 .. 41145897
4476 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G496100.1

Sequence Viewer

Length: 540 bp
ATGACTACCCAAATTTCACATATCAACTTTGACAATTCCAATTTAAAGTCTGAAAGTGTCATCCAAAAACCCTTGTTAGATTCATTCATGGAAATATTAAGGCTTTCGTGGCTGACCGATGTTGTCCAAGAAGGGCATGTATGGAAATGGGAGTTGGTTCACAAGGAAGGATGTGTTAAGAGGACAGTTCCACTCTTCATTCTCAAAGACGTAGTGGATGATTCAAGACATGAATATGAAGAACATTTGTTCTGCATCTATTGCAGCTACCCAAGATGCAACAACAATCTCGTCTCGAAGTGCAAGTATCATTTTGTAATTTCAGCCGATTACGAGTCCGGGGAGCAATTGGACGATCCTTTTGACAAGGATGTTTACTTTTTTAAAGATTGGACACACCTTATACATTGGTTGCTCAACAACAACGGGATCGGCCGCCTCATATGTGTCAATTGGATTAATGAGGGTTCTGCTTTCATAACTGGTCGAGACATCATGCATCTATGGGGTTTACTTTGCCTTTATTTTCAGGTTAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD

Protein Analysis

180

Amino Acids

21.23

Weight (kDa)

5.66

Isoelectric Point (pI)

30.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 436
AclWI GGATC 2 cut(s) 350, 437
AcoI YGGCCR 1 cut(s) 433
AcsI RAATTY 1 cut(s) 12
AgsI TTSAA 1 cut(s) 225
AjuI GAANNNNNNNTTGG 2 cut(s) 137, 169
AluBI AGCT 1 cut(s) 267
AluI AGCT 1 cut(s) 267
Alw26I GTCTC 2 cut(s) 298, 483
AlwI GGATC 2 cut(s) 350, 437
AoxI GGCC 1 cut(s) 433
ApeKI GCWGC 1 cut(s) 264
ApoI RAATTY 1 cut(s) 12
ArsI GACNNNNNNTTYG 2 cut(s) 344, 376
AseI ATTAAT 1 cut(s) 459
AsuC2I CCSGG 1 cut(s) 340
BbvI GCAGC 1 cut(s) 276
BcnI CCSGG 1 cut(s) 340
BcoDI GTCTC 2 cut(s) 298, 483
BisI GCNGC 2 cut(s) 265, 436
BlsI GCNGC 2 cut(s) 266, 437
Bme1390I CCNGG 1 cut(s) 340
BmrFI CCNGG 1 cut(s) 340
BmsI GCATC 3 cut(s) 264, 266, 508
BpuMI CCSGG 1 cut(s) 340
BsaJI CCNNGG 1 cut(s) 339
Bse1I ACTGG 1 cut(s) 487
BseDI CCNNGG 1 cut(s) 339
BseGI GGATG 4 cut(s) 60, 176, 223, 376
BseNI ACTGG 1 cut(s) 487
BseX3I CGGCCG 1 cut(s) 433
BseXI GCAGC 1 cut(s) 276
Bsh1285I CGRYCG 1 cut(s) 436
BshFI GGCC 1 cut(s) 435
BsiEI CGRYCG 1 cut(s) 436
BsiSI CCGG 1 cut(s) 339
BsmAI GTCTC 2 cut(s) 298, 483
BsmBI CGTCTC 1 cut(s) 298
BsnI GGCC 1 cut(s) 435
Bsp143I GATC 2 cut(s) 355, 429
BspACI CCGC 1 cut(s) 436
BspANI GGCC 1 cut(s) 435
BspPI GGATC 2 cut(s) 350, 437
BsrI ACTGG 1 cut(s) 487
BssECI CCNNGG 1 cut(s) 339
BssMI GATC 2 cut(s) 355, 429
Bst4CI ACNGT 1 cut(s) 187
Bst6I CTCTTC 1 cut(s) 200
BstAPI GCANNNNNTGC 1 cut(s) 261
BstF5I GGATG 4 cut(s) 60, 176, 223, 376
BstKTI GATC 2 cut(s) 358, 432
BstMAI GTCTC 2 cut(s) 298, 483
BstMBI GATC 2 cut(s) 355, 429
BstMCI CGRYCG 1 cut(s) 436
BstMWI GCNNNNNNNGC 2 cut(s) 109, 261
BstNSI RCATGY 1 cut(s) 140
BstSCI CCNGG 1 cut(s) 338
BstV1I GCAGC 1 cut(s) 276
BstZI CGGCCG 1 cut(s) 433
BsuRI GGCC 1 cut(s) 435
BtsCI GGATG 4 cut(s) 60, 176, 223, 376
CviAII CATG 4 cut(s) 88, 137, 230, 496
CviJI RGCY 5 cut(s) 103, 112, 267, 326, 435
CviKI_1 RGCY 5 cut(s) 103, 112, 267, 326, 435
DpnI GATC 2 cut(s) 357, 431
DpnII GATC 2 cut(s) 355, 429
DraI TTTAAA 2 cut(s) 45, 385
EaeI YGGCCR 1 cut(s) 433
EagI CGGCCG 1 cut(s) 433
Eam1104I CTCTTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 200
EclXI CGGCCG 1 cut(s) 433
Eco52I CGGCCG 1 cut(s) 433
EcoT22I ATGCAT 1 cut(s) 501
Esp3I CGTCTC 1 cut(s) 298
FaeI CATG 4 cut(s) 91, 140, 233, 499
FatI CATG 4 cut(s) 87, 136, 229, 495
FauNDI CATATG 1 cut(s) 443
Fnu4HI GCNGC 2 cut(s) 265, 436
FokI GGATG 4 cut(s) 47, 183, 230, 383
Fsp4HI GCNGC 2 cut(s) 265, 436
GluI GCNGC 2 cut(s) 265, 436
HaeIII GGCC 1 cut(s) 435
HapII CCGG 1 cut(s) 339
Hin1II CATG 4 cut(s) 91, 140, 233, 499
HinfI GANTC 3 cut(s) 80, 221, 335
HpaII CCGG 1 cut(s) 339
Hpy166II GTNNAC 3 cut(s) 160, 376, 512
Hpy188I TCNGA 1 cut(s) 52
Hpy188III TCNNGA 3 cut(s) 225, 295, 488
Hpy8I GTNNAC 3 cut(s) 160, 376, 512
HpyAV CCTTC 2 cut(s) 125, 161
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 5 cut(s) 255, 264, 279, 303, 499
HpyF10VI GCNNNNNNNGC 2 cut(s) 109, 261
HpySE526I ACGT 1 cut(s) 210
Hsp92II CATG 4 cut(s) 91, 140, 233, 499
Kzo9I GATC 2 cut(s) 355, 429
LmnI GCTCC 1 cut(s) 343
LpnPI CCDG 3 cut(s) 352, 468, 515
Lsp1109I GCAGC 1 cut(s) 276
LweI GCATC 3 cut(s) 264, 266, 508
MaeII ACGT 1 cut(s) 210
MalI GATC 2 cut(s) 357, 431
MboI GATC 2 cut(s) 355, 429
MboII GAAGA 2 cut(s) 187, 251
MfeI CAATTG 2 cut(s) 347, 451
MluCI AATT 6 cut(s) 12, 34, 40, 318, 347, 451
MlyI GAGTC 1 cut(s) 344
MnlI CCTC 3 cut(s) 174, 449, 457
Mph1103I ATGCAT 1 cut(s) 501
MseI TTAA 5 cut(s) 44, 98, 177, 384, 459
MslI CAYNNNNRTG 1 cut(s) 234
MspI CCGG 1 cut(s) 339
MspR9I CCNGG 1 cut(s) 340
MunI CAATTG 2 cut(s) 347, 451
MwoI GCNNNNNNNGC 2 cut(s) 109, 261
NciI CCSGG 1 cut(s) 340
NdeI CATATG 1 cut(s) 443
NdeII GATC 2 cut(s) 355, 429
NlaIII CATG 4 cut(s) 91, 140, 233, 499
NsiI ATGCAT 1 cut(s) 501
NspI RCATGY 1 cut(s) 140
PfeI GAWTC 2 cut(s) 80, 221
PkrI GCNGC 2 cut(s) 266, 437
PleI GAGTC 1 cut(s) 343
PpsI GAGTC 1 cut(s) 343
PshBI ATTAAT 1 cut(s) 459
RseI CAYNNNNRTG 1 cut(s) 234
SaqAI TTAA 5 cut(s) 44, 98, 177, 384, 459
SatI GCNGC 2 cut(s) 265, 436
Sau3AI GATC 2 cut(s) 355, 429
SchI GAGTC 1 cut(s) 344
ScrFI CCNGG 1 cut(s) 340
SetI ASST 5 cut(s) 213, 269, 402, 534, 539
SfaNI GCATC 3 cut(s) 264, 266, 508
SmiMI CAYNNNNRTG 1 cut(s) 234
Sse9I AATT 6 cut(s) 12, 34, 40, 318, 347, 451
SsiI CCGC 1 cut(s) 436
SspI AATATT 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 338
TaaI ACNGT 1 cut(s) 187
TaiI ACGT 1 cut(s) 213
TaqI TCGA 2 cut(s) 296, 487
TaqII GACCGA 1 cut(s) 131
TasI AATT 6 cut(s) 12, 34, 40, 318, 347, 451
TauI GCSGC 1 cut(s) 438
TfiI GAWTC 2 cut(s) 80, 221
Tru1I TTAA 5 cut(s) 44, 98, 177, 384, 459
Tru9I TTAA 5 cut(s) 44, 98, 177, 384, 459
TseI GCWGC 1 cut(s) 264
TspDTI ATGAA 6 cut(s) 72, 76, 187, 246, 252, 466
VspI ATTAAT 1 cut(s) 459
XapI RAATTY 1 cut(s) 12
XceI RCATGY 1 cut(s) 140
Zsp2I ATGCAT 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.