Prupe.1G496500_v2.0.a1

PHD finger protein MALE MEIOCYTE DEATH

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0019306
Physical Location & Seq
Forward (+)
41159750 .. 41170112
10363 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G496500.2

Sequence Viewer

Length: 1455 bp
ATGACTACCCAAATTTCACATATCAACTTCGACAATTGCAATTTCAAGTCAAAAAGTGTCATCCAAAAACCCTTATTGGATTCATTCAAGGAGAATATTGAGGATTTTGTGGAGGACTGTGATGTTGTCCAAGAAGGGTGTGTATGGAAATGGGAGTTCGTTCACAAGGAAGGATGTATTAAGAGGACAGTTCCACTCTTCATTCTCAAAGAGGTAGTGGATGATTCAAGACATAAATCCGGAGAAGATCCGTTTTGCATCTACTGCAGCTACTCAGGATGCAACAACAATGTCGTCTCGAGGAGCAAGTATCACTTCGTAATTCCAGCGGATTACGAGTCTTTGGAGCAGCAATTGGACGATCCTTTTGACAAGGATGATCACGTTTTTAAAGATCGGACACACCTCTTACATGGGTTGCTCCACATCAACGGGATCGGCCACCTCATATGTATCAATGGGATTGATGGGGGTTCTGCTTTCATCCCTGGTCGAGACATCATGCATCTATGGGATTTACTTTGCCTTTATTTTCGTGCGAGGAAAATAACTGTCCGCGATGAAGCATGTAAAACATTTAGGCATATCTCATTGATAGACGGTGTCCGTGAGACGTGTGAGGGGGCCATGGTGACTAGGTTGCTGTTCAGTGTGGCTTTTGGTAGTACTTGGTTTGGGAGGTGGGGATACACGTTTCTACGTGGAAGCTATGGAGTATCGAGAGATACCTACACGACTGCTATTGAGTCCCTTGGGTCTCATCCATTGACTGAGGTTGAAGAAATTGTAGAAAAATACAAGAAGAAGTCCCTTACTCCCCTAGAGTGCATGAAAGATTTATTATCTTTCATGCTGCAGATGAGGTGTGGCACGAGAGGCCAAAAGAAAATGGATCTAAATAAAGATTTGTGGACGGTGTATGATAAGGTTTTAATGAGGAGGAAAAATCACGTCCAAACCATCTTGAATTGCAAAGTCTTTTGCAAGGAAATCCCGTTGAGGCAAATGTCAGCTGAATGTTTAACAGTTACCTTTGTGGTGAGAGATGCAGATGACAATGAGTTGCCGGGAATGGTTGGCTGCGAGTGTACCACACTCCCCGTAAATGATGTGGCTGATTTAAAGGGTCGAGTTACTCGTTTAATTCAAGGTACATATCATGCACTCTCCAATTTCACCATCACCGAAATGGAAGGAGAGGGAACGGATGAATTGAAAGAGAATATGTGGGTGAAGGGTGATGGGGCAGACATGGATTGCAACTATGTAGCTGAAGGTGGACGGGGATGGCTAGTGACTTGTATCTGTGGAGCAGAGGATGATGATGGAGAGGATATGGTTGAGTGTGATACCTGCAAGAAATGGAAGCACATCGAGTGCCTCATTAATGATGGTTTTAAACTTGAAGATAATGCTGGTTTTATTTGTTTGGAATGTTCGACCCCAAGGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD

Protein Analysis

485

Amino Acids

55.21

Weight (kDa)

5.34

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1361
AccII CGCG 1 cut(s) 558
AccIII TCCGGA 1 cut(s) 239
AciI CCGC 2 cut(s) 329, 556
AclWI GGATC 4 cut(s) 242, 356, 443, 900
AcoI YGGCCR 1 cut(s) 439
AcsI RAATTY 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 1293
AfaI GTAC 3 cut(s) 667, 1090, 1153
AflIII ACRYGT 2 cut(s) 614, 690
AgsI TTSAA 8 cut(s) 46, 88, 228, 779, 967, 1148, 1216, 1406
AjiI CACGTC 2 cut(s) 615, 952
AjnI CCWGG 1 cut(s) 487
AluBI AGCT 4 cut(s) 270, 708, 1013, 1271
AluI AGCT 4 cut(s) 270, 708, 1013, 1271
Alw26I GTCTC 4 cut(s) 301, 489, 605, 762
AlwI GGATC 4 cut(s) 242, 356, 443, 900
Ama87I CYCGRG 1 cut(s) 298
Aor13HI TCCGGA 1 cut(s) 239
AoxI GGCC 3 cut(s) 439, 624, 877
ApeKI GCWGC 4 cut(s) 267, 349, 853, 1080
ApoI RAATTY 1 cut(s) 12
ArsI GACNNNNNNTTYG 2 cut(s) 350, 382
AseI ATTAAT 1 cut(s) 1386
AspS9I GGNCC 1 cut(s) 624
AsuC2I CCSGG 1 cut(s) 1068
AsuHPI GGTGA 6 cut(s) 643, 1051, 1168, 1174, 1243, 1250
AvaI CYCGRG 1 cut(s) 298
BauI CACGAG 1 cut(s) 871
BbvI GCAGC 4 cut(s) 279, 361, 840, 1067
BccI CCATC 7 cut(s) 461, 968, 1187, 1235, 1281, 1319, 1385
BciT130I CCWGG 1 cut(s) 489
BciVI GTATCC 1 cut(s) 680
BclI TGATCA 1 cut(s) 379
BcnI CCSGG 1 cut(s) 1068
BcoDI GTCTC 4 cut(s) 301, 489, 605, 762
BfaI CTAG 3 cut(s) 636, 821, 1292
BfmI CTRYAG 2 cut(s) 265, 854
BfuAI ACCTGC 1 cut(s) 1361
BfuI GTATCC 1 cut(s) 680
BisI GCNGC 4 cut(s) 268, 350, 854, 1081
BlsI GCNGC 4 cut(s) 269, 351, 855, 1082
BmcAI AGTACT 1 cut(s) 667
Bme1390I CCNGG 2 cut(s) 489, 1068
BmeT110I CYCGRG 1 cut(s) 298
BmgBI CACGTC 2 cut(s) 615, 952
BmgT120I GGNCC 1 cut(s) 624
BmiI GGNNCC 1 cut(s) 625
BmrFI CCNGG 2 cut(s) 489, 1068
BmsI GCATC 4 cut(s) 267, 269, 514, 1036
BpuMI CCSGG 1 cut(s) 1068
BsaAI YACGTR 1 cut(s) 701
BsaI GGTCTC 1 cut(s) 762
BsaJI CCNNGG 4 cut(s) 487, 627, 751, 1445
BsaWI WCCGGW 1 cut(s) 239
BseAI TCCGGA 1 cut(s) 239
BseBI CCWGG 1 cut(s) 489
BseDI CCNNGG 4 cut(s) 487, 627, 751, 1445
BseMII CTCAG 2 cut(s) 288, 762
BseRI GAGGAG 2 cut(s) 316, 952
BseXI GCAGC 4 cut(s) 279, 361, 840, 1067
Bsh1236I CGCG 1 cut(s) 558
BshFI GGCC 3 cut(s) 441, 626, 879
BsiHKCI CYCGRG 1 cut(s) 298
BsiSI CCGG 2 cut(s) 240, 1067
BslFI GGGAC 2 cut(s) 733, 793
BsmAI GTCTC 4 cut(s) 301, 489, 605, 762
BsmBI CGTCTC 2 cut(s) 301, 605
BsmFI GGGAC 2 cut(s) 733, 793
BsnI GGCC 3 cut(s) 441, 626, 879
Bso31I GGTCTC 1 cut(s) 762
BsoBI CYCGRG 1 cut(s) 298
Bsp13I TCCGGA 1 cut(s) 239
Bsp143I GATC 6 cut(s) 247, 361, 379, 394, 435, 892
Bsp19I CCATGG 1 cut(s) 627
BspACI CCGC 2 cut(s) 329, 556
BspANI GGCC 3 cut(s) 441, 626, 879
BspCNI CTCAG 2 cut(s) 287, 763
BspEI TCCGGA 1 cut(s) 239
BspFNI CGCG 1 cut(s) 558
BspLI GGNNCC 1 cut(s) 625
BspMAI CTGCAG 2 cut(s) 269, 858
BspMI ACCTGC 1 cut(s) 1361
BspPI GGATC 4 cut(s) 242, 356, 443, 900
BspTNI GGTCTC 1 cut(s) 762
BssECI CCNNGG 4 cut(s) 487, 627, 751, 1445
BssMI GATC 6 cut(s) 247, 361, 379, 394, 435, 892
BssSI CACGAG 1 cut(s) 871
BssT1I CCWWGG 3 cut(s) 627, 751, 1445
Bst2BI CACGAG 1 cut(s) 871
Bst2UI CCWGG 1 cut(s) 489
Bst4CI ACNGT 6 cut(s) 119, 190, 553, 602, 916, 1027
Bst6I CTCTTC 1 cut(s) 203
BstAPI GCANNNNNTGC 1 cut(s) 264
BstBAI YACGTR 1 cut(s) 701
BstDEI CTNAG 2 cut(s) 274, 771
BstDSI CCRYGG 1 cut(s) 627
BstFNI CGCG 1 cut(s) 558
BstKTI GATC 6 cut(s) 250, 364, 382, 397, 438, 895
BstMAI GTCTC 4 cut(s) 301, 489, 605, 762
BstMBI GATC 6 cut(s) 247, 361, 379, 394, 435, 892
BstMWI GCNNNNNNNGC 2 cut(s) 264, 876
BstNI CCWGG 1 cut(s) 489
BstNSI RCATGY 1 cut(s) 570
BstSCI CCNGG 2 cut(s) 487, 1066
BstSFI CTRYAG 2 cut(s) 265, 854
BstUI CGCG 1 cut(s) 558
BstV1I GCAGC 4 cut(s) 279, 361, 840, 1067
BstX2I RGATCY 2 cut(s) 247, 892
BstYI RGATCY 2 cut(s) 247, 892
BsuI GTATCC 1 cut(s) 680
BsuRI GGCC 3 cut(s) 441, 626, 879
BtgI CCRYGG 1 cut(s) 627
BtgZI GCGATG 1 cut(s) 573
BtrI CACGTC 2 cut(s) 615, 952
BtsIMutI CAGTG 1 cut(s) 655
BveI ACCTGC 1 cut(s) 1361
Cfr13I GGNCC 1 cut(s) 624
Csp6I GTAC 3 cut(s) 666, 1089, 1152
CviAII CATG 8 cut(s) 413, 502, 567, 628, 829, 850, 1160, 1252
CviQI GTAC 3 cut(s) 666, 1089, 1152
DdeI CTNAG 2 cut(s) 274, 771
DpnI GATC 6 cut(s) 249, 363, 381, 396, 437, 894
DpnII GATC 6 cut(s) 247, 361, 379, 394, 435, 892
DraI TTTAAA 3 cut(s) 391, 1122, 1399
EaeI YGGCCR 1 cut(s) 439
Eam1104I CTCTTC 1 cut(s) 203
EarI CTCTTC 1 cut(s) 203
Eco130I CCWWGG 3 cut(s) 627, 751, 1445
Eco31I GGTCTC 1 cut(s) 762
Eco57I CTGAAG 1 cut(s) 1293
Eco88I CYCGRG 1 cut(s) 298
EcoRII CCWGG 1 cut(s) 487
EcoT14I CCWWGG 3 cut(s) 627, 751, 1445
EcoT22I ATGCAT 1 cut(s) 507
ErhI CCWWGG 3 cut(s) 627, 751, 1445
Esp3I CGTCTC 2 cut(s) 301, 605
FaeI CATG 8 cut(s) 416, 505, 570, 631, 832, 853, 1163, 1255
FalI AAGNNNNNCTT 2 cut(s) 299, 331
FaqI GGGAC 2 cut(s) 733, 793
FatI CATG 8 cut(s) 412, 501, 566, 627, 828, 849, 1159, 1251
FauNDI CATATG 1 cut(s) 449
FbaI TGATCA 1 cut(s) 379
Fnu4HI GCNGC 4 cut(s) 268, 350, 854, 1081
Fsp4HI GCNGC 4 cut(s) 268, 350, 854, 1081
FspBI CTAG 3 cut(s) 636, 821, 1292
GluI GCNGC 4 cut(s) 268, 350, 854, 1081
HaeIII GGCC 3 cut(s) 441, 626, 879
HapII CCGG 2 cut(s) 240, 1067
Hin1II CATG 8 cut(s) 416, 505, 570, 631, 832, 853, 1163, 1255
HinfI GANTC 4 cut(s) 80, 224, 338, 746
HpaII CCGG 2 cut(s) 240, 1067
HphI GGTGA 6 cut(s) 643, 1051, 1168, 1174, 1243, 1250
Hpy166II GTNNAC 4 cut(s) 163, 912, 1089, 1280
Hpy188I TCNGA 1 cut(s) 399
Hpy188III TCNNGA 7 cut(s) 228, 240, 276, 298, 494, 720, 964
Hpy8I GTNNAC 4 cut(s) 163, 912, 1089, 1280
HpyAV CCTTC 5 cut(s) 128, 164, 1187, 1228, 1268
HpyCH4III ACNGT 6 cut(s) 119, 190, 553, 602, 916, 1027
HpyCH4IV ACGT 5 cut(s) 384, 614, 692, 700, 951
HpyF10VI GCNNNNNNNGC 2 cut(s) 264, 876
HpyF3I CTNAG 2 cut(s) 274, 771
HpySE526I ACGT 5 cut(s) 384, 614, 692, 700, 951
Hsp92II CATG 8 cut(s) 416, 505, 570, 631, 832, 853, 1163, 1255
Kpn2I TCCGGA 1 cut(s) 239
Ksp22I TGATCA 1 cut(s) 379
Kzo9I GATC 6 cut(s) 247, 361, 379, 394, 435, 892
LmnI GCTCC 4 cut(s) 303, 346, 426, 1310
LpnPI CCDG 8 cut(s) 253, 261, 339, 474, 501, 1080, 1366, 1401
Lsp1109I GCAGC 4 cut(s) 279, 361, 840, 1067
LweI GCATC 4 cut(s) 267, 269, 514, 1036
MaeI CTAG 3 cut(s) 636, 821, 1292
MaeII ACGT 5 cut(s) 384, 614, 692, 700, 951
MaeIII GTNAC 4 cut(s) 631, 1027, 1132, 1294
MalI GATC 6 cut(s) 249, 363, 381, 396, 437, 894
MboI GATC 6 cut(s) 247, 361, 379, 394, 435, 892
MboII GAAGA 5 cut(s) 190, 257, 791, 814, 1418
MfeI CAATTG 2 cut(s) 34, 353
MflI RGATCY 2 cut(s) 247, 892
MlyI GAGTC 2 cut(s) 347, 755
Mph1103I ATGCAT 1 cut(s) 507
MroI TCCGGA 1 cut(s) 239
MseI TTAA 8 cut(s) 180, 390, 932, 1022, 1121, 1142, 1386, 1398
MslI CAYNNNNRTG 1 cut(s) 1187
MspA1I CMGCKG 2 cut(s) 329, 1013
MspI CCGG 2 cut(s) 240, 1067
MspR9I CCNGG 2 cut(s) 489, 1068
MunI CAATTG 2 cut(s) 34, 353
MvaI CCWGG 1 cut(s) 489
MvnI CGCG 1 cut(s) 558
MwoI GCNNNNNNNGC 2 cut(s) 264, 876
NciI CCSGG 1 cut(s) 1068
NcoI CCATGG 1 cut(s) 627
NdeI CATATG 1 cut(s) 449
NdeII GATC 6 cut(s) 247, 361, 379, 394, 435, 892
NlaIII CATG 8 cut(s) 416, 505, 570, 631, 832, 853, 1163, 1255
NlaIV GGNNCC 1 cut(s) 625
NmuCI GTSAC 2 cut(s) 631, 1294
NsiI ATGCAT 1 cut(s) 507
NspI RCATGY 1 cut(s) 570
PaeR7I CTCGAG 1 cut(s) 298
PcsI WCGNNNNNNNCGW 1 cut(s) 1135
PfeI GAWTC 2 cut(s) 80, 224
PflFI GACNNNGTC 1 cut(s) 602
PkrI GCNGC 4 cut(s) 269, 351, 855, 1082
PleI GAGTC 2 cut(s) 346, 754
PpsI GAGTC 2 cut(s) 346, 754
Ppu21I YACGTR 1 cut(s) 701
PshBI ATTAAT 1 cut(s) 1386
Psp6I CCWGG 1 cut(s) 487
PspGI CCWGG 1 cut(s) 487
PspN4I GGNNCC 1 cut(s) 625
PspPI GGNCC 1 cut(s) 624
PstI CTGCAG 2 cut(s) 269, 858
PsuI RGATCY 2 cut(s) 247, 892
PsyI GACNNNGTC 1 cut(s) 602
PvuII CAGCTG 1 cut(s) 1013
RsaI GTAC 3 cut(s) 667, 1090, 1153
RsaNI GTAC 3 cut(s) 666, 1089, 1152
RseI CAYNNNNRTG 1 cut(s) 1187
SaqAI TTAA 8 cut(s) 180, 390, 932, 1022, 1121, 1142, 1386, 1398
SatI GCNGC 4 cut(s) 268, 350, 854, 1081
Sau3AI GATC 6 cut(s) 247, 361, 379, 394, 435, 892
Sau96I GGNCC 1 cut(s) 624
ScaI AGTACT 1 cut(s) 667
SchI GAGTC 2 cut(s) 347, 755
ScrFI CCNGG 2 cut(s) 489, 1068
SfaNI GCATC 4 cut(s) 267, 269, 514, 1036
SfcI CTRYAG 2 cut(s) 265, 854
Sfr274I CTCGAG 1 cut(s) 298
SlaI CTCGAG 1 cut(s) 298
SmiMI CAYNNNNRTG 1 cut(s) 1187
SmlI CTYRAG 1 cut(s) 298
SmoI CTYRAG 1 cut(s) 298
SsiI CCGC 2 cut(s) 329, 556
SspI AATATT 1 cut(s) 97
SspMI CTAG 3 cut(s) 636, 821, 1292
StyD4I CCNGG 2 cut(s) 487, 1066
StyI CCWWGG 3 cut(s) 627, 751, 1445
TaaI ACNGT 6 cut(s) 119, 190, 553, 602, 916, 1027
TaiI ACGT 5 cut(s) 387, 617, 695, 703, 954
TaqI TCGA 7 cut(s) 30, 299, 493, 719, 1129, 1374, 1439
TatI WGTACW 1 cut(s) 665
TfiI GAWTC 2 cut(s) 80, 224
Tru1I TTAA 8 cut(s) 180, 390, 932, 1022, 1121, 1142, 1386, 1398
Tru9I TTAA 8 cut(s) 180, 390, 932, 1022, 1121, 1142, 1386, 1398
TscAI CASTG 1 cut(s) 655
TseFI GTSAC 2 cut(s) 631, 1294
TseI GCWGC 4 cut(s) 267, 349, 853, 1080
Tsp45I GTSAC 2 cut(s) 631, 1294
TspDTI ATGAA 7 cut(s) 72, 190, 472, 576, 838, 845, 1224
TspGWI ACGGA 3 cut(s) 240, 596, 1220
TspRI CASTG 1 cut(s) 655
Tth111I GACNNNGTC 1 cut(s) 602
VspI ATTAAT 1 cut(s) 1386
XapI RAATTY 1 cut(s) 12
XceI RCATGY 1 cut(s) 570
XcmI CCANNNNNNNNNTGG 1 cut(s) 1186
XhoI CTCGAG 1 cut(s) 298
XspI CTAG 3 cut(s) 636, 821, 1292
ZrmI AGTACT 1 cut(s) 667
Zsp2I ATGCAT 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.