Prupe.1G496700_v2.0.a1

PHD finger protein MALE MEIOCYTE DEATH

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0019306
Physical Location & Seq
Forward (+)
41174930 .. 41176242
1313 bp
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UTR
Exon/CDS
Intron
Prupe.1G496700.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 456 bp
ATGTATAGGAAAATAACTGCATGTGATGAAGCATGTAAAGCATTTAGGCATATCACATTGATAGATGGTCTCTGTGAGCCGTGCGAGGGGGCCATGGAGACTAGGTGGTTGTTTAGTGTGGCTTTTGGTAGTATGTGGTTTGGGAGGTTGGGATACACGTTTCTACGTGGAAGCTATGGGGTGTCAAGAGGTAGCTACACAACCGCTATTGGGTACCTTAGGTCTCGTTCGTTGATTGAAGTTGAAGAAATTGTAGGAAAATACAAGAAGATGTGTCTTACACCCCTAGAGTGCATGAGAGATTTATTATCTTTCGTGCGGCAGATGAGGTGTGGCATGAGAGGCCGAAAAAGAACGGATCTAAATAAAGATTTGTGGACGGTGTACGATGAGGTTTTAATGAGGAGGAAAAATCACATCCAAACTATCTTGAATTGCAAAGTTTTTTGGACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD

Protein Analysis

152

Amino Acids

17.7

Weight (kDa)

9.4

Isoelectric Point (pI)

57.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 213
AccB1I GGYRCC 1 cut(s) 213
AciI CCGC 2 cut(s) 204, 319
AclWI GGATC 1 cut(s) 366
AfaI GTAC 2 cut(s) 215, 386
AfiI CCNNNNNNNGG 2 cut(s) 86, 210
AflIII ACRYGT 1 cut(s) 156
AgsI TTSAA 3 cut(s) 239, 245, 433
AjiI CACGTC 1 cut(s) 453
AluBI AGCT 2 cut(s) 174, 195
AluI AGCT 2 cut(s) 174, 195
Alw26I GTCTC 3 cut(s) 74, 92, 228
AlwI GGATC 1 cut(s) 366
AoxI GGCC 2 cut(s) 90, 343
Asp718I GGTACC 1 cut(s) 213
AspS9I GGNCC 1 cut(s) 90
AxyI CCTNAGG 1 cut(s) 218
BanI GGYRCC 1 cut(s) 213
BccI CCATC 1 cut(s) 59
BceAI ACGGC 1 cut(s) 64
BciVI GTATCC 1 cut(s) 146
BcoDI GTCTC 3 cut(s) 74, 92, 228
BfaI CTAG 2 cut(s) 102, 287
BfuI GTATCC 1 cut(s) 146
BisI GCNGC 1 cut(s) 320
BlsI GCNGC 1 cut(s) 321
BmgBI CACGTC 1 cut(s) 453
BmgT120I GGNCC 1 cut(s) 90
BmiI GGNNCC 2 cut(s) 91, 215
BsaAI YACGTR 1 cut(s) 167
BsaI GGTCTC 2 cut(s) 74, 228
BsaJI CCNNGG 1 cut(s) 93
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 210
Bse21I CCTNAGG 1 cut(s) 218
BseDI CCNNGG 1 cut(s) 93
BseGI GGATG 1 cut(s) 417
BseLI CCNNNNNNNGG 2 cut(s) 86, 210
BseRI GAGGAG 1 cut(s) 418
BshFI GGCC 2 cut(s) 92, 345
BshNI GGYRCC 1 cut(s) 213
BslI CCNNNNNNNGG 2 cut(s) 86, 210
BsmAI GTCTC 3 cut(s) 74, 92, 228
BsnI GGCC 2 cut(s) 92, 345
Bso31I GGTCTC 2 cut(s) 74, 228
Bsp143I GATC 1 cut(s) 358
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 2 cut(s) 204, 319
BspANI GGCC 2 cut(s) 92, 345
BspLI GGNNCC 2 cut(s) 91, 215
BspPI GGATC 1 cut(s) 366
BspT107I GGYRCC 1 cut(s) 213
BspTNI GGTCTC 2 cut(s) 74, 228
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 1 cut(s) 358
BssT1I CCWWGG 1 cut(s) 93
Bst4CI ACNGT 1 cut(s) 382
BstBAI YACGTR 1 cut(s) 167
BstDEI CTNAG 1 cut(s) 218
BstDSI CCRYGG 1 cut(s) 93
BstF5I GGATG 1 cut(s) 417
BstKTI GATC 1 cut(s) 361
BstMAI GTCTC 3 cut(s) 74, 92, 228
BstMBI GATC 1 cut(s) 358
BstMWI GCNNNNNNNGC 2 cut(s) 38, 342
BstNSI RCATGY 2 cut(s) 24, 36
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
Bsu36I CCTNAGG 1 cut(s) 218
BsuI GTATCC 1 cut(s) 146
BsuRI GGCC 2 cut(s) 92, 345
BtgI CCRYGG 1 cut(s) 93
BtrI CACGTC 1 cut(s) 453
BtsCI GGATG 1 cut(s) 417
Cfr13I GGNCC 1 cut(s) 90
Csp6I GTAC 2 cut(s) 214, 385
CviAII CATG 5 cut(s) 21, 33, 94, 295, 337
CviJI RGCY 6 cut(s) 79, 92, 122, 174, 195, 345
CviKI_1 RGCY 6 cut(s) 79, 92, 122, 174, 195, 345
CviQI GTAC 2 cut(s) 214, 385
DdeI CTNAG 1 cut(s) 218
DpnI GATC 1 cut(s) 360
DpnII GATC 1 cut(s) 358
Eco130I CCWWGG 1 cut(s) 93
Eco31I GGTCTC 2 cut(s) 74, 228
Eco81I CCTNAGG 1 cut(s) 218
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 5 cut(s) 24, 36, 97, 298, 340
FaiI YATR 9 cut(s) 6, 22, 34, 51, 95, 134, 177, 296, 338
FatI CATG 5 cut(s) 20, 32, 93, 294, 336
Fnu4HI GCNGC 1 cut(s) 320
FokI GGATG 1 cut(s) 404
Fsp4HI GCNGC 1 cut(s) 320
FspBI CTAG 2 cut(s) 102, 287
GluI GCNGC 1 cut(s) 320
HaeIII GGCC 2 cut(s) 92, 345
Hin1II CATG 5 cut(s) 24, 36, 97, 298, 340
Hpy166II GTNNAC 2 cut(s) 378, 385
Hpy188III TCNNGA 2 cut(s) 186, 430
Hpy8I GTNNAC 2 cut(s) 378, 385
HpyCH4III ACNGT 1 cut(s) 382
HpyCH4IV ACGT 3 cut(s) 158, 166, 452
HpyCH4V TGCA 3 cut(s) 20, 294, 438
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 342
HpyF3I CTNAG 1 cut(s) 218
HpySE526I ACGT 3 cut(s) 158, 166, 452
Hsp92II CATG 5 cut(s) 24, 36, 97, 298, 340
KpnI GGTACC 1 cut(s) 217
Kzo9I GATC 1 cut(s) 358
MaeI CTAG 2 cut(s) 102, 287
MaeII ACGT 3 cut(s) 158, 166, 452
MalI GATC 1 cut(s) 360
MboI GATC 1 cut(s) 358
MboII GAAGA 2 cut(s) 257, 280
MflI RGATCY 1 cut(s) 358
MluCI AATT 2 cut(s) 249, 433
MnlI CCTC 8 cut(s) 79, 138, 182, 321, 335, 385, 396, 399
MseI TTAA 1 cut(s) 398
MwoI GCNNNNNNNGC 2 cut(s) 38, 342
NcoI CCATGG 1 cut(s) 93
NdeII GATC 1 cut(s) 358
NlaIII CATG 5 cut(s) 24, 36, 97, 298, 340
NlaIV GGNNCC 2 cut(s) 91, 215
NspI RCATGY 2 cut(s) 24, 36
PkrI GCNGC 1 cut(s) 321
Ppu21I YACGTR 1 cut(s) 167
PspN4I GGNNCC 2 cut(s) 91, 215
PspPI GGNCC 1 cut(s) 90
PsuI RGATCY 1 cut(s) 358
RsaI GTAC 2 cut(s) 215, 386
RsaNI GTAC 2 cut(s) 214, 385
SaqAI TTAA 1 cut(s) 398
SatI GCNGC 1 cut(s) 320
Sau3AI GATC 1 cut(s) 358
Sau96I GGNCC 1 cut(s) 90
Sse9I AATT 2 cut(s) 249, 433
SsiI CCGC 2 cut(s) 204, 319
SspMI CTAG 2 cut(s) 102, 287
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 1 cut(s) 382
TaiI ACGT 3 cut(s) 161, 169, 455
TasI AATT 2 cut(s) 249, 433
TauI GCSGC 1 cut(s) 322
Tru1I TTAA 1 cut(s) 398
Tru9I TTAA 1 cut(s) 398
TspDTI ATGAA 1 cut(s) 42
TspGWI ACGGA 1 cut(s) 371
XceI RCATGY 2 cut(s) 24, 36
XspI CTAG 2 cut(s) 102, 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.