LRR-repeat protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g32301 |
| prunus_persica | Prupe.1G551800_v2.0.a1 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 686 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 883 |
| AciI | CCGC | 4 cut(s) | 389, 807, 1186, 1425 |
| AclWI | GGATC | 9 cut(s) | 373, 386, 610, 623, 879, 920, 933, 1233, 1246 |
| AcoI | YGGCCR | 1 cut(s) | 1187 |
| AcsI | RAATTY | 5 cut(s) | 266, 335, 629, 862, 889 |
| AcuI | CTGAAG | 1 cut(s) | 860 |
| AfaI | GTAC | 3 cut(s) | 444, 1078, 1300 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 388, 883, 1111 |
| AflII | CTTAAG | 1 cut(s) | 635 |
| AflIII | ACRYGT | 2 cut(s) | 228, 896 |
| AjnI | CCWGG | 1 cut(s) | 1214 |
| Alw26I | GTCTC | 3 cut(s) | 229, 1001, 1120 |
| AlwI | GGATC | 9 cut(s) | 373, 386, 610, 623, 879, 920, 933, 1233, 1246 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 883 |
| Ama87I | CYCGRG | 1 cut(s) | 1412 |
| AoxI | GGCC | 2 cut(s) | 530, 1187 |
| ApeKI | GCWGC | 4 cut(s) | 969, 1083, 1230, 1427 |
| ApoI | RAATTY | 5 cut(s) | 266, 335, 629, 862, 889 |
| AspS9I | GGNCC | 3 cut(s) | 4, 50, 531 |
| AsuHPI | GGTGA | 3 cut(s) | 203, 770, 866 |
| AvaI | CYCGRG | 1 cut(s) | 1412 |
| AvaII | GGWCC | 2 cut(s) | 4, 50 |
| BamHI | GGATCC | 4 cut(s) | 378, 615, 925, 1238 |
| BbsI | GAAGAC | 1 cut(s) | 456 |
| BbvI | GCAGC | 4 cut(s) | 981, 1095, 1217, 1414 |
| BccI | CCATC | 5 cut(s) | 476, 862, 1046, 1176, 1177 |
| BceAI | ACGGC | 1 cut(s) | 445 |
| BciT130I | CCWGG | 1 cut(s) | 1216 |
| BcoDI | GTCTC | 3 cut(s) | 229, 1001, 1120 |
| BfaI | CTAG | 2 cut(s) | 167, 1080 |
| BfrI | CTTAAG | 1 cut(s) | 635 |
| BglII | AGATCT | 1 cut(s) | 415 |
| BisI | GCNGC | 6 cut(s) | 390, 970, 1084, 1187, 1231, 1428 |
| BlsI | GCNGC | 6 cut(s) | 391, 971, 1085, 1188, 1232, 1429 |
| Bme1390I | CCNGG | 1 cut(s) | 1216 |
| Bme18I | GGWCC | 2 cut(s) | 4, 50 |
| BmeT110I | CYCGRG | 1 cut(s) | 1412 |
| BmgT120I | GGNCC | 3 cut(s) | 4, 50, 531 |
| BmiI | GGNNCC | 4 cut(s) | 380, 617, 927, 1240 |
| BmrFI | CCNGG | 1 cut(s) | 1216 |
| BmsI | GCATC | 1 cut(s) | 1186 |
| BpiI | GAAGAC | 1 cut(s) | 456 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1406, 1438 |
| BpmI | CTGGAG | 1 cut(s) | 1352 |
| BpuEI | CTTGAG | 2 cut(s) | 24, 30 |
| BsaBI | GATNNNNATC | 1 cut(s) | 729 |
| BsaI | GGTCTC | 2 cut(s) | 1001, 1120 |
| BsaWI | WCCGGW | 2 cut(s) | 662, 755 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 388, 883, 1111 |
| Bse1I | ACTGG | 2 cut(s) | 86, 1335 |
| Bse3DI | GCAATG | 1 cut(s) | 797 |
| Bse8I | GATNNNNATC | 1 cut(s) | 729 |
| BseBI | CCWGG | 1 cut(s) | 1216 |
| BseGI | GGATG | 3 cut(s) | 1169, 1211, 1373 |
| BseJI | GATNNNNATC | 1 cut(s) | 729 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 388, 883, 1111 |
| BseMI | GCAATG | 1 cut(s) | 797 |
| BseMII | CTCAG | 3 cut(s) | 45, 376, 903 |
| BseNI | ACTGG | 2 cut(s) | 86, 1335 |
| BseRI | GAGGAG | 1 cut(s) | 994 |
| BseXI | GCAGC | 4 cut(s) | 981, 1095, 1217, 1414 |
| BsgI | GTGCAG | 1 cut(s) | 1045 |
| BshFI | GGCC | 2 cut(s) | 532, 1189 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1412 |
| BsiSI | CCGG | 2 cut(s) | 663, 756 |
| BslFI | GGGAC | 2 cut(s) | 332, 1020 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 388, 883, 1111 |
| BsmAI | GTCTC | 3 cut(s) | 229, 1001, 1120 |
| BsmBI | CGTCTC | 1 cut(s) | 229 |
| BsmFI | GGGAC | 2 cut(s) | 332, 1020 |
| BsnI | GGCC | 2 cut(s) | 532, 1189 |
| Bso31I | GGTCTC | 2 cut(s) | 1001, 1120 |
| BsoBI | CYCGRG | 1 cut(s) | 1412 |
| Bsp143I | GATC | 9 cut(s) | 79, 378, 415, 615, 724, 871, 925, 1238, 1419 |
| BspACI | CCGC | 4 cut(s) | 389, 807, 1186, 1425 |
| BspANI | GGCC | 2 cut(s) | 532, 1189 |
| BspCNI | CTCAG | 3 cut(s) | 46, 375, 904 |
| BspLI | GGNNCC | 4 cut(s) | 380, 617, 927, 1240 |
| BspPI | GGATC | 9 cut(s) | 373, 386, 610, 623, 879, 920, 933, 1233, 1246 |
| BspQI | GCTCTTC | 1 cut(s) | 697 |
| BspTI | CTTAAG | 1 cut(s) | 635 |
| BspTNI | GGTCTC | 2 cut(s) | 1001, 1120 |
| BsrDI | GCAATG | 1 cut(s) | 797 |
| BsrI | ACTGG | 2 cut(s) | 86, 1335 |
| BssMI | GATC | 9 cut(s) | 79, 378, 415, 615, 724, 871, 925, 1238, 1419 |
| Bst2UI | CCWGG | 1 cut(s) | 1216 |
| Bst4CI | ACNGT | 3 cut(s) | 682, 786, 1435 |
| Bst6I | CTCTTC | 4 cut(s) | 541, 697, 999, 1125 |
| BstAFI | CTTAAG | 1 cut(s) | 635 |
| BstC8I | GCNNGC | 1 cut(s) | 34 |
| BstDEI | CTNAG | 4 cut(s) | 54, 362, 803, 912 |
| BstF5I | GGATG | 3 cut(s) | 1169, 1211, 1373 |
| BstKTI | GATC | 9 cut(s) | 82, 381, 418, 618, 727, 874, 928, 1241, 1422 |
| BstMAI | GTCTC | 3 cut(s) | 229, 1001, 1120 |
| BstMBI | GATC | 9 cut(s) | 79, 378, 415, 615, 724, 871, 925, 1238, 1419 |
| BstNI | CCWGG | 1 cut(s) | 1216 |
| BstNSI | RCATGY | 1 cut(s) | 232 |
| BstSCI | CCNGG | 1 cut(s) | 1214 |
| BstV1I | GCAGC | 4 cut(s) | 981, 1095, 1217, 1414 |
| BstV2I | GAAGAC | 1 cut(s) | 456 |
| BstX2I | RGATCY | 5 cut(s) | 378, 415, 615, 925, 1238 |
| BstYI | RGATCY | 5 cut(s) | 378, 415, 615, 925, 1238 |
| BsuRI | GGCC | 2 cut(s) | 532, 1189 |
| BtsCI | GGATG | 3 cut(s) | 1169, 1211, 1373 |
| BtsI | GCAGTG | 1 cut(s) | 440 |
| BtsIMutI | CAGTG | 3 cut(s) | 82, 440, 791 |
| Cac8I | GCNNGC | 1 cut(s) | 34 |
| CaiI | CAGNNNCTG | 1 cut(s) | 883 |
| Cfr13I | GGNCC | 3 cut(s) | 4, 50, 531 |
| Csp6I | GTAC | 3 cut(s) | 443, 1077, 1299 |
| CviAII | CATG | 7 cut(s) | 229, 375, 386, 621, 1012, 1039, 1262 |
| CviQI | GTAC | 3 cut(s) | 443, 1077, 1299 |
| DdeI | CTNAG | 4 cut(s) | 54, 362, 803, 912 |
| DpnI | GATC | 9 cut(s) | 81, 380, 417, 617, 726, 873, 927, 1240, 1421 |
| DpnII | GATC | 9 cut(s) | 79, 378, 415, 615, 724, 871, 925, 1238, 1419 |
| EaeI | YGGCCR | 1 cut(s) | 1187 |
| Eam1104I | CTCTTC | 4 cut(s) | 541, 697, 999, 1125 |
| EarI | CTCTTC | 4 cut(s) | 541, 697, 999, 1125 |
| Eco31I | GGTCTC | 2 cut(s) | 1001, 1120 |
| Eco47I | GGWCC | 2 cut(s) | 4, 50 |
| Eco57I | CTGAAG | 1 cut(s) | 860 |
| Eco88I | CYCGRG | 1 cut(s) | 1412 |
| EcoO109I | RGGNCCY | 1 cut(s) | 50 |
| EcoRII | CCWGG | 1 cut(s) | 1214 |
| EcoT22I | ATGCAT | 1 cut(s) | 1263 |
| Esp3I | CGTCTC | 1 cut(s) | 229 |
| FaeI | CATG | 7 cut(s) | 232, 378, 389, 624, 1015, 1042, 1265 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 679, 711 |
| FaqI | GGGAC | 2 cut(s) | 332, 1020 |
| FatI | CATG | 7 cut(s) | 228, 374, 385, 620, 1011, 1038, 1261 |
| Fnu4HI | GCNGC | 6 cut(s) | 390, 970, 1084, 1187, 1231, 1428 |
| FokI | GGATG | 3 cut(s) | 1156, 1198, 1360 |
| Fsp4HI | GCNGC | 6 cut(s) | 390, 970, 1084, 1187, 1231, 1428 |
| FspBI | CTAG | 2 cut(s) | 167, 1080 |
| GluI | GCNGC | 6 cut(s) | 390, 970, 1084, 1187, 1231, 1428 |
| GsuI | CTGGAG | 1 cut(s) | 1352 |
| HaeIII | GGCC | 2 cut(s) | 532, 1189 |
| HapII | CCGG | 2 cut(s) | 663, 756 |
| Hin1II | CATG | 7 cut(s) | 232, 378, 389, 624, 1015, 1042, 1265 |
| HinfI | GANTC | 4 cut(s) | 72, 701, 880, 941 |
| HpaII | CCGG | 2 cut(s) | 663, 756 |
| HphI | GGTGA | 3 cut(s) | 203, 770, 866 |
| Hpy188I | TCNGA | 7 cut(s) | 137, 365, 840, 930, 946, 1344, 1446 |
| Hpy188III | TCNNGA | 7 cut(s) | 53, 167, 281, 419, 923, 1202, 1271 |
| HpyAV | CCTTC | 6 cut(s) | 124, 133, 584, 925, 1009, 1183 |
| HpyCH4III | ACNGT | 3 cut(s) | 682, 786, 1435 |
| HpyCH4IV | ACGT | 2 cut(s) | 673, 896 |
| HpyCH4V | TGCA | 8 cut(s) | 32, 341, 433, 969, 1026, 1155, 1261, 1430 |
| HpyF3I | CTNAG | 4 cut(s) | 54, 362, 803, 912 |
| HpySE526I | ACGT | 2 cut(s) | 673, 896 |
| Hsp92II | CATG | 7 cut(s) | 232, 378, 389, 624, 1015, 1042, 1265 |
| Kzo9I | GATC | 9 cut(s) | 79, 378, 415, 615, 724, 871, 925, 1238, 1419 |
| LguI | GCTCTTC | 1 cut(s) | 697 |
| LmnI | GCTCC | 4 cut(s) | 598, 835, 1204, 1333 |
| Lsp1109I | GCAGC | 4 cut(s) | 981, 1095, 1217, 1414 |
| LweI | GCATC | 1 cut(s) | 1186 |
| MaeI | CTAG | 2 cut(s) | 167, 1080 |
| MaeII | ACGT | 2 cut(s) | 673, 896 |
| MaeIII | GTNAC | 1 cut(s) | 209 |
| MalI | GATC | 9 cut(s) | 81, 380, 417, 617, 726, 873, 927, 1240, 1421 |
| MboI | GATC | 9 cut(s) | 79, 378, 415, 615, 724, 871, 925, 1238, 1419 |
| MflI | RGATCY | 5 cut(s) | 378, 415, 615, 925, 1238 |
| MlyI | GAGTC | 1 cut(s) | 950 |
| MnlI | CCTC | 6 cut(s) | 128, 238, 544, 952, 972, 1267 |
| Mph1103I | ATGCAT | 1 cut(s) | 1263 |
| MseI | TTAA | 9 cut(s) | 201, 252, 351, 510, 525, 636, 818, 893, 1125 |
| MspA1I | CMGCKG | 1 cut(s) | 1427 |
| MspCI | CTTAAG | 1 cut(s) | 635 |
| MspI | CCGG | 2 cut(s) | 663, 756 |
| MspR9I | CCNGG | 1 cut(s) | 1216 |
| MvaI | CCWGG | 1 cut(s) | 1216 |
| NdeII | GATC | 9 cut(s) | 79, 378, 415, 615, 724, 871, 925, 1238, 1419 |
| NlaIII | CATG | 7 cut(s) | 232, 378, 389, 624, 1015, 1042, 1265 |
| NlaIV | GGNNCC | 4 cut(s) | 380, 617, 927, 1240 |
| NmuCI | GTSAC | 1 cut(s) | 209 |
| NsiI | ATGCAT | 1 cut(s) | 1263 |
| NspI | RCATGY | 1 cut(s) | 232 |
| PciI | ACATGT | 1 cut(s) | 228 |
| PciSI | GCTCTTC | 1 cut(s) | 697 |
| PfeI | GAWTC | 3 cut(s) | 72, 701, 880 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 883 |
| PkrI | GCNGC | 6 cut(s) | 391, 971, 1085, 1188, 1232, 1429 |
| PleI | GAGTC | 1 cut(s) | 949 |
| PpsI | GAGTC | 1 cut(s) | 949 |
| PpuMI | RGGWCCY | 1 cut(s) | 50 |
| PscI | ACATGT | 1 cut(s) | 228 |
| PsiI | TTATAA | 1 cut(s) | 686 |
| Psp5II | RGGWCCY | 1 cut(s) | 50 |
| Psp6I | CCWGG | 1 cut(s) | 1214 |
| PspGI | CCWGG | 1 cut(s) | 1214 |
| PspN4I | GGNNCC | 4 cut(s) | 380, 617, 927, 1240 |
| PspPI | GGNCC | 3 cut(s) | 4, 50, 531 |
| PspPPI | RGGWCCY | 1 cut(s) | 50 |
| PstNI | CAGNNNCTG | 1 cut(s) | 883 |
| PsuI | RGATCY | 5 cut(s) | 378, 415, 615, 925, 1238 |
| RsaI | GTAC | 3 cut(s) | 444, 1078, 1300 |
| RsaNI | GTAC | 3 cut(s) | 443, 1077, 1299 |
| SapI | GCTCTTC | 1 cut(s) | 697 |
| SaqAI | TTAA | 9 cut(s) | 201, 252, 351, 510, 525, 636, 818, 893, 1125 |
| SatI | GCNGC | 6 cut(s) | 390, 970, 1084, 1187, 1231, 1428 |
| Sau3AI | GATC | 9 cut(s) | 79, 378, 415, 615, 724, 871, 925, 1238, 1419 |
| Sau96I | GGNCC | 3 cut(s) | 4, 50, 531 |
| SchI | GAGTC | 1 cut(s) | 950 |
| ScrFI | CCNGG | 1 cut(s) | 1216 |
| SfaNI | GCATC | 1 cut(s) | 1186 |
| SinI | GGWCC | 2 cut(s) | 4, 50 |
| SmlI | CTYRAG | 3 cut(s) | 39, 45, 635 |
| SmoI | CTYRAG | 3 cut(s) | 39, 45, 635 |
| SsiI | CCGC | 4 cut(s) | 389, 807, 1186, 1425 |
| SspI | AATATT | 2 cut(s) | 823, 954 |
| SspMI | CTAG | 2 cut(s) | 167, 1080 |
| StyD4I | CCNGG | 1 cut(s) | 1214 |
| TaaI | ACNGT | 3 cut(s) | 682, 786, 1435 |
| TaiI | ACGT | 2 cut(s) | 676, 899 |
| TaqI | TCGA | 2 cut(s) | 426, 727 |
| TauI | GCSGC | 2 cut(s) | 392, 1189 |
| TfiI | GAWTC | 3 cut(s) | 72, 701, 880 |
| Tru1I | TTAA | 9 cut(s) | 201, 252, 351, 510, 525, 636, 818, 893, 1125 |
| Tru9I | TTAA | 9 cut(s) | 201, 252, 351, 510, 525, 636, 818, 893, 1125 |
| TscAI | CASTG | 3 cut(s) | 82, 440, 791 |
| TseFI | GTSAC | 1 cut(s) | 209 |
| TseI | GCWGC | 4 cut(s) | 969, 1083, 1230, 1427 |
| Tsp45I | GTSAC | 1 cut(s) | 209 |
| TspDTI | ATGAA | 9 cut(s) | 49, 171, 1017, 1028, 1050, 1165, 1200, 1320, 1362 |
| TspGWI | ACGGA | 2 cut(s) | 177, 371 |
| TspRI | CASTG | 3 cut(s) | 82, 440, 791 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 883 |
| Vha464I | CTTAAG | 1 cut(s) | 635 |
| VpaK11BI | GGWCC | 2 cut(s) | 4, 50 |
| XapI | RAATTY | 5 cut(s) | 266, 335, 629, 862, 889 |
| XbaI | TCTAGA | 1 cut(s) | 166 |
| XceI | RCATGY | 1 cut(s) | 232 |
| XspI | CTAG | 2 cut(s) | 167, 1080 |
| Zsp2I | ATGCAT | 1 cut(s) | 1263 |