Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0024545

Physical Location & Seq

Genomic Coordinates Reverse (-)

46149375 .. 46150267

Gene Structure 893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G565300.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGTTAAGAGGGGAGAAAAGTGCAATACCTCTCTTGTATCTCGCAAGAGTAGGAGATCCAACCTTTCATGAGGACGCTGGTTTGATAAAGAAGCAAGCTGCATCCAATCATACATTAATACCGGCAAACTATCCATTGGCTTCGGCAGCCCCTCTACTTTGTGCTGGAATTACTGTTTATGCTTCGATGGTACGCCATAAGATGAACCAACCTGGTAAATCTCTAGGGGTGATTGGCTTTGGTGGCCTAGGTCACATGGCTGTGAAGTTTGGCAAGGCATTTGAGGAAGCTTTAAGTCAGCTGGGTGCAGATAACTTTGTGGTCTCATCTGACAGAAATCAGATGAAGGCCCTGGTGAAGTCAGTAGACTTTATAATTGATATAGCATCTGGTGATCACCCTTTTGATCCATACATGGAACTATTGAAACTGGTGGAGTTCTGTGTAACAGGTGGAACAAAGGATATCCAAGAAATGATAGATTTCTTTGCTTCAAATGGAATTCATCCAATGATTGAAATAATTCCAATTCAATCTGCAAATGAAGCTATTGAGGGGCTACTAAAAAGTGTTGTGATATACTGGTTTGCGATTGATATTGAAAACTCCCTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

206

Amino Acids

22.24

Weight (kDa)

5.64

Isoelectric Point (pI)

28.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0024545)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G565300_v2.0.a1 Prupe.4G100200_v2.0.a1 Prupe.5G136600_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	374
AccI	GTMKAC	1 cut(s)	366
AclWI	GGATC	2 cut(s)	50, 401
AcsI	RAATTY	1 cut(s)	501
AfaI	GTAC	1 cut(s)	192
AgsI	TTSAA	5 cut(s)	427, 495, 518, 533, 602
AjnI	CCWGG	2 cut(s)	211, 351
AluBI	AGCT	4 cut(s)	98, 290, 301, 548
AluI	AGCT	4 cut(s)	98, 290, 301, 548
Alw26I	GTCTC	1 cut(s)	328
AlwI	GGATC	2 cut(s)	50, 401
AoxI	GGCC	2 cut(s)	244, 348
ApeKI	GCWGC	2 cut(s)	98, 146
ApoI	RAATTY	1 cut(s)	501
AseI	ATTAAT	1 cut(s)	116
Asp700I	GAANNNNTTC	1 cut(s)	522
AspA2I	CCTAGG	1 cut(s)	247
AspS9I	GGNCC	1 cut(s)	349
AsuHPI	GGTGA	4 cut(s)	241, 367, 389, 404
AvrII	CCTAGG	1 cut(s)	247
BbvI	GCAGC	2 cut(s)	85, 158
BccI	CCATC	1 cut(s)	181
BciT130I	CCWGG	2 cut(s)	213, 353
BclI	TGATCA	1 cut(s)	394
BcoDI	GTCTC	1 cut(s)	328
BfaI	CTAG	2 cut(s)	224, 248
BisI	GCNGC	2 cut(s)	99, 147
BlnI	CCTAGG	1 cut(s)	247
BlsI	GCNGC	2 cut(s)	100, 148
Bme1390I	CCNGG	2 cut(s)	213, 353
BmgT120I	GGNCC	1 cut(s)	349
BmrFI	CCNGG	2 cut(s)	213, 353
BmsI	GCATC	2 cut(s)	110, 395
BsaI	GGTCTC	1 cut(s)	328
BsaJI	CCNNGG	2 cut(s)	247, 351
Bse118I	RCCGGY	1 cut(s)	121
Bse1I	ACTGG	2 cut(s)	435, 587
BseBI	CCWGG	2 cut(s)	213, 353
BseDI	CCNNGG	2 cut(s)	247, 351
BseGI	GGATG	2 cut(s)	101, 505
BseNI	ACTGG	2 cut(s)	435, 587
BseXI	GCAGC	2 cut(s)	85, 158
BseYI	CCCAGC	1 cut(s)	301
BsgI	GTGCAG	1 cut(s)	327
BshFI	GGCC	2 cut(s)	246, 350
BsiSI	CCGG	1 cut(s)	122
BsmAI	GTCTC	1 cut(s)	328
BsnI	GGCC	2 cut(s)	246, 350
Bso31I	GGTCTC	1 cut(s)	328
Bsp143I	GATC	3 cut(s)	55, 394, 406
BspANI	GGCC	2 cut(s)	246, 350
BspHI	TCATGA	1 cut(s)	67
BspPI	GGATC	2 cut(s)	50, 401
BspTNI	GGTCTC	1 cut(s)	328
BsrFI	RCCGGY	1 cut(s)	121
BsrI	ACTGG	2 cut(s)	435, 587
BssAI	RCCGGY	1 cut(s)	121
BssECI	CCNNGG	2 cut(s)	247, 351
BssMI	GATC	3 cut(s)	55, 394, 406
BssT1I	CCWWGG	1 cut(s)	247
Bst2UI	CCWGG	2 cut(s)	213, 353
Bst4CI	ACNGT	1 cut(s)	175
BstC8I	GCNNGC	1 cut(s)	96
BstF5I	GGATG	2 cut(s)	101, 505
BstKTI	GATC	3 cut(s)	58, 397, 409
BstMAI	GTCTC	1 cut(s)	328
BstMBI	GATC	3 cut(s)	55, 394, 406
BstMWI	GCNNNNNNNGC	3 cut(s)	146, 243, 545
BstNI	CCWGG	2 cut(s)	213, 353
BstSCI	CCNGG	2 cut(s)	211, 351
BstV1I	GCAGC	2 cut(s)	85, 158
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BsuRI	GGCC	2 cut(s)	246, 350
BtsCI	GGATG	2 cut(s)	101, 505
Cac8I	GCNNGC	1 cut(s)	96
CciI	TCATGA	1 cut(s)	67
Cfr10I	RCCGGY	1 cut(s)	121
Cfr13I	GGNCC	1 cut(s)	349
CseI	GACGC	1 cut(s)	83
CsiI	ACCWGGT	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	191
CviAII	CATG	3 cut(s)	68, 256, 415
CviQI	GTAC	1 cut(s)	191
DpnI	GATC	3 cut(s)	57, 396, 408
DpnII	GATC	3 cut(s)	55, 394, 406
Eco130I	CCWWGG	1 cut(s)	247
Eco31I	GGTCTC	1 cut(s)	328
Eco32I	GATATC	1 cut(s)	466
EcoO109I	RGGNCCY	1 cut(s)	349
EcoRI	GAATTC	1 cut(s)	501
EcoRII	CCWGG	2 cut(s)	211, 351
EcoRV	GATATC	1 cut(s)	466
EcoT14I	CCWWGG	1 cut(s)	247
ErhI	CCWWGG	1 cut(s)	247
FaeI	CATG	3 cut(s)	71, 259, 418
FatI	CATG	3 cut(s)	67, 255, 414
FbaI	TGATCA	1 cut(s)	394
FblI	GTMKAC	1 cut(s)	366
Fnu4HI	GCNGC	2 cut(s)	99, 147
FokI	GGATG	2 cut(s)	88, 492
Fsp4HI	GCNGC	2 cut(s)	99, 147
FspBI	CTAG	2 cut(s)	224, 248
GluI	GCNGC	2 cut(s)	99, 147
GsaI	CCCAGC	1 cut(s)	305
HaeIII	GGCC	2 cut(s)	246, 350
HapII	CCGG	1 cut(s)	122
HgaI	GACGC	1 cut(s)	83
Hin1II	CATG	3 cut(s)	71, 259, 418
HindIII	AAGCTT	1 cut(s)	288
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	4 cut(s)	241, 367, 389, 404
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	2 cut(s)	331, 342
Hpy188III	TCNNGA	1 cut(s)	68
Hpy8I	GTNNAC	1 cut(s)	367
HpyAV	CCTTC	1 cut(s)	340
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4V	TGCA	4 cut(s)	23, 101, 308, 539
HpyF10VI	GCNNNNNNNGC	3 cut(s)	146, 243, 545
Hsp92II	CATG	3 cut(s)	71, 259, 418
Ksp22I	TGATCA	1 cut(s)	394
Kzo9I	GATC	3 cut(s)	55, 394, 406
Lsp1109I	GCAGC	2 cut(s)	85, 158
LweI	GCATC	2 cut(s)	110, 395
MabI	ACCWGGT	1 cut(s)	211
MaeI	CTAG	2 cut(s)	224, 248
MaeIII	GTNAC	2 cut(s)	251, 445
MalI	GATC	3 cut(s)	57, 396, 408
MboI	GATC	3 cut(s)	55, 394, 406
MflI	RGATCY	1 cut(s)	55
MluCI	AATT	5 cut(s)	168, 375, 501, 522, 528
MmeI	TCCRAC	1 cut(s)	83
MnlI	CCTC	5 cut(s)	39, 64, 162, 277, 547
MroXI	GAANNNNTTC	1 cut(s)	522
MseI	TTAA	3 cut(s)	5, 116, 293
MslI	CAYNNNNRTG	1 cut(s)	260
MspA1I	CMGCKG	1 cut(s)	301
MspI	CCGG	1 cut(s)	122
MspR9I	CCNGG	2 cut(s)	213, 353
MvaI	CCWGG	2 cut(s)	213, 353
MwoI	GCNNNNNNNGC	3 cut(s)	146, 243, 545
NdeII	GATC	3 cut(s)	55, 394, 406
NlaIII	CATG	3 cut(s)	71, 259, 418
NmuCI	GTSAC	1 cut(s)	251
PagI	TCATGA	1 cut(s)	67
PdmI	GAANNNNTTC	1 cut(s)	522
PkrI	GCNGC	2 cut(s)	100, 148
PshBI	ATTAAT	1 cut(s)	116
PsiI	TTATAA	1 cut(s)	374
Psp6I	CCWGG	2 cut(s)	211, 351
PspFI	CCCAGC	1 cut(s)	301
PspGI	CCWGG	2 cut(s)	211, 351
PspPI	GGNCC	1 cut(s)	349
PsuI	RGATCY	1 cut(s)	55
PvuII	CAGCTG	1 cut(s)	301
RsaI	GTAC	1 cut(s)	192
RsaNI	GTAC	1 cut(s)	191
RseI	CAYNNNNRTG	1 cut(s)	260
SaqAI	TTAA	3 cut(s)	5, 116, 293
SatI	GCNGC	2 cut(s)	99, 147
Sau3AI	GATC	3 cut(s)	55, 394, 406
Sau96I	GGNCC	1 cut(s)	349
ScrFI	CCNGG	2 cut(s)	213, 353
SetI	ASST	9 cut(s)	31, 65, 100, 214, 253, 292, 303, 454, 550
SexAI	ACCWGGT	1 cut(s)	211
SfaNI	GCATC	2 cut(s)	110, 395
SmiMI	CAYNNNNRTG	1 cut(s)	260
Sse9I	AATT	5 cut(s)	168, 375, 501, 522, 528
SspMI	CTAG	2 cut(s)	224, 248
StyD4I	CCNGG	2 cut(s)	211, 351
StyI	CCWWGG	1 cut(s)	247
TaaI	ACNGT	1 cut(s)	175
TaqI	TCGA	1 cut(s)	185
TasI	AATT	5 cut(s)	168, 375, 501, 522, 528
Tru1I	TTAA	3 cut(s)	5, 116, 293
Tru9I	TTAA	3 cut(s)	5, 116, 293
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	2 cut(s)	98, 146
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	5 cut(s)	56, 218, 359, 494, 558
VspI	ATTAAT	1 cut(s)	116
XapI	RAATTY	1 cut(s)	501
XmaJI	CCTAGG	1 cut(s)	247
XmiI	GTMKAC	1 cut(s)	366
XmnI	GAANNNNTTC	1 cut(s)	522
XspI	CTAG	2 cut(s)	224, 248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.