Prupe.2G100100_v2.0.a1

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0024509
Physical Location & Seq
Forward (+)
15595319 .. 15602522
7204 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G100100.1

Sequence Viewer

Length: 471 bp
ATGGCCTCCGTTGAGATGAAGAAGATAACCCTAAAGAGCGAAGACGGTGAGATCTTTGAGATGAAGAAGATAATCCTAAAGAGCGACGACAACCAAACCTTCGAGGTGGAGGTGGCTGTGGCCATGCGGTCACAAACCATCAAGCACATGGTGGAGGACGACTGTGTCAATGACGCGATACCTCTGTCAAATGTGACCAGCAGCGCCCTAGCGAAGGTGATCGAGTACTGCAAGAAGCACCATGAAGAGGATGCCGATGTCAAGAACAAAGAGAGTCTCAAGAGCTGGGATGCTGAGTTCGTGAAGGTGGACCTAAGCAAGCTGTTTGACTTAATCTTGGCTGCAAACTATCTGGACATCAAGAGCCTACTGGATTTGACTTGCCAGGCTGTGGCGGACATGATCAAGGACAAGATACCTGAAGAGATCCGTGTGATCTTCAACATCGAGAATGAGTGGGCATTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

157

Amino Acids

17.81

Weight (kDa)

4.72

Isoelectric Point (pI)

29.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024509)

Species Orthologous Gene IDs
prunus_persica Prupe.2G100100_v2.0.a1 Prupe.2G100400_v2.0.a1 Prupe.7G054500_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 164
AccB7I CCANNNNNTGG 1 cut(s) 391
AccII CGCG 1 cut(s) 176
AciI CCGC 2 cut(s) 127, 395
AclWI GGATC 1 cut(s) 421
AcoI YGGCCR 1 cut(s) 120
AcuI CTGAAG 1 cut(s) 441
AdeI CACNNNGTG 1 cut(s) 151
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 3 cut(s) 214, 247, 391
AgsI TTSAA 1 cut(s) 442
AjnI CCWGG 1 cut(s) 384
AloI GAACNNNNNNTCC 2 cut(s) 281, 313
AluBI AGCT 2 cut(s) 285, 322
AluI AGCT 2 cut(s) 285, 322
Alw26I GTCTC 1 cut(s) 281
AlwI GGATC 1 cut(s) 421
AoxI GGCC 2 cut(s) 3, 120
ApeKI GCWGC 2 cut(s) 201, 341
AspLEI GCGC 1 cut(s) 206
AspS9I GGNCC 1 cut(s) 310
AsuHPI GGTGA 2 cut(s) 59, 229
AvaII GGWCC 1 cut(s) 310
BaeI ACNNNNGTAYC 2 cut(s) 170, 203
BalI TGGCCA 1 cut(s) 122
BbsI GAAGAC 1 cut(s) 48
BbvI GCAGC 2 cut(s) 213, 328
BccI CCATC 1 cut(s) 146
BciT130I CCWGG 1 cut(s) 386
BclI TGATCA 1 cut(s) 402
BcoDI GTCTC 1 cut(s) 281
BfaI CTAG 1 cut(s) 209
BfoI RGCGCY 1 cut(s) 207
BglII AGATCT 1 cut(s) 51
BisI GCNGC 2 cut(s) 202, 342
BlsI GCNGC 2 cut(s) 203, 343
BmcAI AGTACT 1 cut(s) 227
Bme1390I CCNGG 1 cut(s) 386
Bme18I GGWCC 1 cut(s) 310
BmgT120I GGNCC 1 cut(s) 310
BmrFI CCNGG 1 cut(s) 386
BmsI GCATC 2 cut(s) 241, 280
BpiI GAAGAC 1 cut(s) 48
Bpu10I CCTNAGC 1 cut(s) 314
BpuEI CTTGAG 1 cut(s) 263
Bsc4I CCNNNNNNNGG 3 cut(s) 214, 247, 391
Bse1I ACTGG 1 cut(s) 375
BseBI CCWGG 1 cut(s) 386
BseGI GGATG 2 cut(s) 256, 295
BseLI CCNNNNNNNGG 3 cut(s) 214, 247, 391
BseMII CTCAG 1 cut(s) 285
BseNI ACTGG 1 cut(s) 375
BseXI GCAGC 2 cut(s) 213, 328
BseYI CCCAGC 1 cut(s) 285
Bsh1236I CGCG 1 cut(s) 176
BshFI GGCC 2 cut(s) 5, 122
BslI CCNNNNNNNGG 3 cut(s) 214, 247, 391
BsmAI GTCTC 1 cut(s) 281
BsnI GGCC 2 cut(s) 5, 122
Bsp143I GATC 5 cut(s) 51, 219, 402, 426, 435
BspACI CCGC 2 cut(s) 127, 395
BspANI GGCC 2 cut(s) 5, 122
BspCNI CTCAG 1 cut(s) 286
BspFNI CGCG 1 cut(s) 176
BspPI GGATC 1 cut(s) 421
BsrI ACTGG 1 cut(s) 375
BssMI GATC 5 cut(s) 51, 219, 402, 426, 435
Bst2UI CCWGG 1 cut(s) 386
Bst4CI ACNGT 2 cut(s) 47, 164
Bst6I CTCTTC 2 cut(s) 240, 417
BstC8I GCNNGC 1 cut(s) 320
BstDEI CTNAG 2 cut(s) 294, 314
BstENI CCTNNNNNAGG 1 cut(s) 212
BstF5I GGATG 2 cut(s) 256, 295
BstFNI CGCG 1 cut(s) 176
BstH2I RGCGCY 1 cut(s) 207
BstHHI GCGC 1 cut(s) 206
BstKTI GATC 5 cut(s) 54, 222, 405, 429, 438
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 5 cut(s) 51, 219, 402, 426, 435
BstNI CCWGG 1 cut(s) 386
BstSCI CCNGG 1 cut(s) 384
BstUI CGCG 1 cut(s) 176
BstV1I GCAGC 2 cut(s) 213, 328
BstV2I GAAGAC 1 cut(s) 48
BstX2I RGATCY 2 cut(s) 51, 426
BstYI RGATCY 2 cut(s) 51, 426
BsuRI GGCC 2 cut(s) 5, 122
BtsCI GGATG 2 cut(s) 256, 295
Cac8I GCNNGC 1 cut(s) 320
CfoI GCGC 1 cut(s) 206
Cfr13I GGNCC 1 cut(s) 310
CseI GACGC 1 cut(s) 182
Csp6I GTAC 1 cut(s) 226
CviAII CATG 4 cut(s) 124, 148, 242, 400
CviJI RGCY 8 cut(s) 5, 116, 122, 285, 322, 341, 366, 389
CviKI_1 RGCY 8 cut(s) 5, 116, 122, 285, 322, 341, 366, 389
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 2 cut(s) 294, 314
DpnI GATC 5 cut(s) 53, 221, 404, 428, 437
DpnII GATC 5 cut(s) 51, 219, 402, 426, 435
DraIII CACNNNGTG 1 cut(s) 151
DrdI GACNNNNNNGTC 1 cut(s) 164
DseDI GACNNNNNNGTC 1 cut(s) 164
EaeI YGGCCR 1 cut(s) 120
Eam1104I CTCTTC 2 cut(s) 240, 417
EarI CTCTTC 2 cut(s) 240, 417
EciI GGCGGA 1 cut(s) 410
Eco47I GGWCC 1 cut(s) 310
Eco57I CTGAAG 1 cut(s) 441
EcoNI CCTNNNNNAGG 1 cut(s) 212
EcoRII CCWGG 1 cut(s) 384
FaeI CATG 4 cut(s) 127, 151, 245, 403
FaiI YATR 4 cut(s) 125, 149, 243, 401
FatI CATG 4 cut(s) 123, 147, 241, 399
FbaI TGATCA 1 cut(s) 402
Fnu4HI GCNGC 2 cut(s) 202, 342
FokI GGATG 2 cut(s) 263, 302
Fsp4HI GCNGC 2 cut(s) 202, 342
FspBI CTAG 1 cut(s) 209
GlaI GCGC 1 cut(s) 205
GluI GCNGC 2 cut(s) 202, 342
GsaI CCCAGC 1 cut(s) 289
HaeII RGCGCY 1 cut(s) 207
HaeIII GGCC 2 cut(s) 5, 122
HgaI GACGC 1 cut(s) 182
HhaI GCGC 1 cut(s) 206
Hin1II CATG 4 cut(s) 127, 151, 245, 403
Hin6I GCGC 1 cut(s) 204
HinP1I GCGC 1 cut(s) 204
HinfI GANTC 1 cut(s) 274
HphI GGTGA 2 cut(s) 59, 229
Hpy166II GTNNAC 1 cut(s) 310
Hpy188III TCNNGA 6 cut(s) 262, 280, 301, 353, 361, 448
Hpy8I GTNNAC 1 cut(s) 310
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 3 cut(s) 109, 208, 298
HpyCH4III ACNGT 2 cut(s) 47, 164
HpyCH4V TGCA 2 cut(s) 231, 344
HpyF3I CTNAG 2 cut(s) 294, 314
Hsp92II CATG 4 cut(s) 127, 151, 245, 403
HspAI GCGC 1 cut(s) 204
Ksp22I TGATCA 1 cut(s) 402
Kzo9I GATC 5 cut(s) 51, 219, 402, 426, 435
LpnPI CCDG 7 cut(s) 211, 271, 338, 356, 371, 398, 432
Lsp1109I GCAGC 2 cut(s) 213, 328
LweI GCATC 2 cut(s) 241, 280
MaeI CTAG 1 cut(s) 209
MaeIII GTNAC 2 cut(s) 129, 193
MalI GATC 5 cut(s) 53, 221, 404, 428, 437
MboI GATC 5 cut(s) 51, 219, 402, 426, 435
MboII GAAGA 8 cut(s) 31, 34, 53, 76, 79, 257, 430, 434
MflI RGATCY 2 cut(s) 51, 426
MlsI TGGCCA 1 cut(s) 122
MluNI TGGCCA 1 cut(s) 122
MlyI GAGTC 1 cut(s) 283
MnlI CCTC 6 cut(s) 16, 97, 103, 148, 192, 241
Mox20I TGGCCA 1 cut(s) 122
MscI TGGCCA 1 cut(s) 122
MseI TTAA 1 cut(s) 332
MslI CAYNNNNRTG 1 cut(s) 466
Msp20I TGGCCA 1 cut(s) 122
MspR9I CCNGG 1 cut(s) 386
MvaI CCWGG 1 cut(s) 386
MvnI CGCG 1 cut(s) 176
NdeII GATC 5 cut(s) 51, 219, 402, 426, 435
NlaIII CATG 4 cut(s) 127, 151, 245, 403
NmuCI GTSAC 2 cut(s) 129, 193
PflFI GACNNNGTC 1 cut(s) 164
PflMI CCANNNNNTGG 1 cut(s) 391
PkrI GCNGC 2 cut(s) 203, 343
PleI GAGTC 1 cut(s) 282
PpsI GAGTC 1 cut(s) 282
Psp6I CCWGG 1 cut(s) 384
PspFI CCCAGC 1 cut(s) 285
PspGI CCWGG 1 cut(s) 384
PspPI GGNCC 1 cut(s) 310
PsuI RGATCY 2 cut(s) 51, 426
PsyI GACNNNGTC 1 cut(s) 164
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
RseI CAYNNNNRTG 1 cut(s) 466
SaqAI TTAA 1 cut(s) 332
SatI GCNGC 2 cut(s) 202, 342
Sau3AI GATC 5 cut(s) 51, 219, 402, 426, 435
Sau96I GGNCC 1 cut(s) 310
ScaI AGTACT 1 cut(s) 227
SchI GAGTC 1 cut(s) 283
ScrFI CCNGG 1 cut(s) 386
SfaNI GCATC 2 cut(s) 241, 280
SinI GGWCC 1 cut(s) 310
SmiMI CAYNNNNRTG 1 cut(s) 466
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
SsiI CCGC 2 cut(s) 127, 395
SspMI CTAG 1 cut(s) 209
StyD4I CCNGG 1 cut(s) 384
TaaI ACNGT 2 cut(s) 47, 164
TaqI TCGA 3 cut(s) 102, 222, 447
TatI WGTACW 1 cut(s) 225
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TseFI GTSAC 2 cut(s) 129, 193
TseI GCWGC 2 cut(s) 201, 341
Tsp45I GTSAC 2 cut(s) 129, 193
TspDTI ATGAA 3 cut(s) 32, 77, 258
TspGWI ACGGA 1 cut(s) 419
Tth111I GACNNNGTC 1 cut(s) 164
Van91I CCANNNNNTGG 1 cut(s) 391
VpaK11BI GGWCC 1 cut(s) 310
XagI CCTNNNNNAGG 1 cut(s) 212
XcmI CCANNNNNNNNNTGG 1 cut(s) 145
XspI CTAG 1 cut(s) 209
ZrmI AGTACT 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.