Prupe.7G054500_v2.0.a1

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0024509
Physical Location & Seq
Forward (+)
9336641 .. 9340327
3687 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G054500.1

Sequence Viewer

Length: 462 bp
ATGAAGAAGATAACCCTAAAGAGCGACGATAACCAGACCTTCGAGGTGGAGGTGGCTGTGGCCATGCAGTTGCAAACCATCAAGCACATGGTGGAGGACGACTGTGCCGACGATGCGATACCTCTACCAAATGTGACTAGCAGCGCCCTAGCGAAGGTGATCGAGTACTGCAAGAAGCACCATGAAGAGGATGCCGATGTCAATAACAAAGAGAGTCTCAAGAGCTGGATGCTGAGTCCGCCACTGTTTGTGAAGGTGGACTTGAGCAAGCTATTTGACCTAATCTTGGCTGCAAACTATTTGGACATCAAGAGCCTATTGGATTTGACTTGCCAGACTGTGGCGGACATGATCAAGGACAAGACACCTGAAGAGATCCGTGTGATCTTCAACATCGAGAATGATTTTACGCCTGAGGAAGAAAAGGAGATTCGTAAGGAAAATGAGTGGGCATTCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

154

Amino Acids

17.59

Weight (kDa)

4.59

Isoelectric Point (pI)

37.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024509)

Species Orthologous Gene IDs
prunus_persica Prupe.2G100100_v2.0.a1 Prupe.2G100400_v2.0.a1 Prupe.7G054500_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 340
AciI CCGC 2 cut(s) 239, 344
AclWI GGATC 1 cut(s) 370
AcoI YGGCCR 1 cut(s) 60
AcuI CTGAAG 1 cut(s) 390
AdeI CACNNNGTG 1 cut(s) 91
AfaI GTAC 1 cut(s) 167
AfiI CCNNNNNNNGG 4 cut(s) 154, 187, 286, 340
AgsI TTSAA 1 cut(s) 391
AluBI AGCT 2 cut(s) 225, 271
AluI AGCT 2 cut(s) 225, 271
Alw26I GTCTC 1 cut(s) 221
AlwI GGATC 1 cut(s) 370
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 2 cut(s) 141, 290
AspLEI GCGC 1 cut(s) 146
AsuHPI GGTGA 1 cut(s) 169
AxyI CCTNAGG 1 cut(s) 414
BalI TGGCCA 1 cut(s) 62
BbvI GCAGC 2 cut(s) 153, 277
BccI CCATC 1 cut(s) 86
BclI TGATCA 1 cut(s) 351
BcoDI GTCTC 1 cut(s) 221
BfaI CTAG 2 cut(s) 138, 149
BfoI RGCGCY 1 cut(s) 147
BisI GCNGC 2 cut(s) 142, 291
BlsI GCNGC 2 cut(s) 143, 292
BmcAI AGTACT 1 cut(s) 167
BmsI GCATC 3 cut(s) 103, 181, 219
BpuEI CTTGAG 2 cut(s) 203, 283
Bsc4I CCNNNNNNNGG 4 cut(s) 154, 187, 286, 340
Bse21I CCTNAGG 1 cut(s) 414
BseGI GGATG 2 cut(s) 196, 234
BseLI CCNNNNNNNGG 4 cut(s) 154, 187, 286, 340
BseMII CTCAG 2 cut(s) 224, 405
BseXI GCAGC 2 cut(s) 153, 277
BshFI GGCC 1 cut(s) 62
BslI CCNNNNNNNGG 4 cut(s) 154, 187, 286, 340
BsmAI GTCTC 1 cut(s) 221
BsmI GAATGC 1 cut(s) 452
BsnI GGCC 1 cut(s) 62
Bsp143I GATC 4 cut(s) 159, 351, 375, 384
BspACI CCGC 2 cut(s) 239, 344
BspANI GGCC 1 cut(s) 62
BspCNI CTCAG 2 cut(s) 225, 406
BspPI GGATC 1 cut(s) 370
BssMI GATC 4 cut(s) 159, 351, 375, 384
Bst4CI ACNGT 3 cut(s) 104, 246, 340
Bst6I CTCTTC 2 cut(s) 180, 366
BstC8I GCNNGC 1 cut(s) 269
BstDEI CTNAG 2 cut(s) 233, 414
BstENI CCTNNNNNAGG 1 cut(s) 152
BstF5I GGATG 2 cut(s) 196, 234
BstH2I RGCGCY 1 cut(s) 147
BstHHI GCGC 1 cut(s) 146
BstKTI GATC 4 cut(s) 162, 354, 378, 387
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 4 cut(s) 159, 351, 375, 384
BstMWI GCNNNNNNNGC 2 cut(s) 113, 238
BstV1I GCAGC 2 cut(s) 153, 277
BstX2I RGATCY 1 cut(s) 375
BstYI RGATCY 1 cut(s) 375
Bsu36I CCTNAGG 1 cut(s) 414
BsuRI GGCC 1 cut(s) 62
BtsCI GGATG 2 cut(s) 196, 234
BtsIMutI CAGTG 1 cut(s) 242
Cac8I GCNNGC 1 cut(s) 269
CfoI GCGC 1 cut(s) 146
Csp6I GTAC 1 cut(s) 166
CviAII CATG 4 cut(s) 64, 88, 182, 349
CviJI RGCY 6 cut(s) 56, 62, 225, 271, 290, 315
CviKI_1 RGCY 6 cut(s) 56, 62, 225, 271, 290, 315
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 2 cut(s) 233, 414
DpnI GATC 4 cut(s) 161, 353, 377, 386
DpnII GATC 4 cut(s) 159, 351, 375, 384
DraIII CACNNNGTG 1 cut(s) 91
EaeI YGGCCR 1 cut(s) 60
Eam1104I CTCTTC 2 cut(s) 180, 366
EarI CTCTTC 2 cut(s) 180, 366
EciI GGCGGA 2 cut(s) 228, 359
Eco57I CTGAAG 1 cut(s) 390
Eco81I CCTNAGG 1 cut(s) 414
EcoNI CCTNNNNNAGG 1 cut(s) 152
FaeI CATG 4 cut(s) 67, 91, 185, 352
FaiI YATR 4 cut(s) 65, 89, 183, 350
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FatI CATG 4 cut(s) 63, 87, 181, 348
FbaI TGATCA 1 cut(s) 351
Fnu4HI GCNGC 2 cut(s) 142, 291
FokI GGATG 2 cut(s) 203, 241
Fsp4HI GCNGC 2 cut(s) 142, 291
FspBI CTAG 2 cut(s) 138, 149
GlaI GCGC 1 cut(s) 145
GluI GCNGC 2 cut(s) 142, 291
HaeII RGCGCY 1 cut(s) 147
HaeIII GGCC 1 cut(s) 62
HhaI GCGC 1 cut(s) 146
Hin1II CATG 4 cut(s) 67, 91, 185, 352
Hin6I GCGC 1 cut(s) 144
HinP1I GCGC 1 cut(s) 144
HinfI GANTC 3 cut(s) 214, 235, 430
HphI GGTGA 1 cut(s) 169
Hpy166II GTNNAC 1 cut(s) 259
Hpy188III TCNNGA 3 cut(s) 220, 310, 397
Hpy8I GTNNAC 1 cut(s) 259
Hpy99I CGWCG 2 cut(s) 29, 113
HpyAV CCTTC 3 cut(s) 49, 148, 247
HpyCH4III ACNGT 3 cut(s) 104, 246, 340
HpyCH4V TGCA 4 cut(s) 67, 73, 171, 293
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 238
HpyF3I CTNAG 2 cut(s) 233, 414
Hsp92II CATG 4 cut(s) 67, 91, 185, 352
HspAI GCGC 1 cut(s) 144
Ksp22I TGATCA 1 cut(s) 351
Kzo9I GATC 4 cut(s) 159, 351, 375, 384
LpnPI CCDG 5 cut(s) 47, 211, 347, 381, 426
Lsp1109I GCAGC 2 cut(s) 153, 277
LweI GCATC 3 cut(s) 103, 181, 219
MaeI CTAG 2 cut(s) 138, 149
MaeIII GTNAC 1 cut(s) 133
MalI GATC 4 cut(s) 161, 353, 377, 386
MboI GATC 4 cut(s) 159, 351, 375, 384
MboII GAAGA 6 cut(s) 16, 19, 197, 379, 383, 431
MflI RGATCY 1 cut(s) 375
MlsI TGGCCA 1 cut(s) 62
MluNI TGGCCA 1 cut(s) 62
MlyI GAGTC 2 cut(s) 223, 244
MnlI CCTC 6 cut(s) 37, 43, 88, 132, 181, 409
Mox20I TGGCCA 1 cut(s) 62
MscI TGGCCA 1 cut(s) 62
MslI CAYNNNNRTG 1 cut(s) 457
Msp20I TGGCCA 1 cut(s) 62
Mva1269I GAATGC 1 cut(s) 452
MwoI GCNNNNNNNGC 2 cut(s) 113, 238
NdeII GATC 4 cut(s) 159, 351, 375, 384
NlaIII CATG 4 cut(s) 67, 91, 185, 352
NmuCI GTSAC 1 cut(s) 133
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PctI GAATGC 1 cut(s) 452
PfeI GAWTC 1 cut(s) 430
PflMI CCANNNNNTGG 1 cut(s) 340
PkrI GCNGC 2 cut(s) 143, 292
PleI GAGTC 2 cut(s) 222, 243
PpsI GAGTC 2 cut(s) 222, 243
PsuI RGATCY 1 cut(s) 375
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
RseI CAYNNNNRTG 1 cut(s) 457
SatI GCNGC 2 cut(s) 142, 291
Sau3AI GATC 4 cut(s) 159, 351, 375, 384
ScaI AGTACT 1 cut(s) 167
SchI GAGTC 2 cut(s) 223, 244
SfaNI GCATC 3 cut(s) 103, 181, 219
SmiMI CAYNNNNRTG 1 cut(s) 457
SmlI CTYRAG 2 cut(s) 218, 262
SmoI CTYRAG 2 cut(s) 218, 262
SsiI CCGC 2 cut(s) 239, 344
SspMI CTAG 2 cut(s) 138, 149
TaaI ACNGT 3 cut(s) 104, 246, 340
TaqI TCGA 4 cut(s) 42, 162, 396, 456
TatI WGTACW 1 cut(s) 165
TfiI GAWTC 1 cut(s) 430
TscAI CASTG 1 cut(s) 249
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 2 cut(s) 141, 290
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 2 cut(s) 17, 198
TspGWI ACGGA 1 cut(s) 368
TspRI CASTG 1 cut(s) 249
Van91I CCANNNNNTGG 1 cut(s) 340
XagI CCTNNNNNAGG 1 cut(s) 152
XcmI CCANNNNNNNNNTGG 1 cut(s) 85
XspI CTAG 2 cut(s) 138, 149
ZrmI AGTACT 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.