Prupe.2G155400_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
20870879 .. 20873464
2586 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G155400.1

Sequence Viewer

Length: 423 bp
ATGACATGGGAAAAATACCAAAAATGCCGGGTTAGGATTCTAGGGAAATCCAATTTAGGTAACACTCTTTACAAAATTGTGGTTTCCCGAAATTTCAAGCTCGCTGTGAGGGGCTTGAATGATAAGGTCATGCAGAAGCTCGAAAGTGAGAAACAACATGCACTAACCCAAATGAAGATGTTACCACACTTAGTTGTGAGTAGCCTCAATGACATGAGGGATGTTTTGAAAGTAAAGAAAGTGAACGAGTGGGAGGGGAATAAAATTTCGGTGAATTATGACCCTAATTCAGATGAGTACGCTCAAATAAGTAAAATTGCTGTAGACAATGAGCTGGAGGTAGTCCCATTTGATCATGAGGTTGAGATGGATCGCAATAGAAACGTTGGCAACGGCTATGGACACCCTGAATGGAAACGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

16.34

Weight (kDa)

9.14

Isoelectric Point (pI)

14.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0024516)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 324
AclI AACGTT 1 cut(s) 384
AclWI GGATC 1 cut(s) 378
AcsI RAATTY 2 cut(s) 91, 264
AfaI GTAC 1 cut(s) 299
AgsI TTSAA 3 cut(s) 97, 118, 229
AluBI AGCT 3 cut(s) 100, 139, 334
AluI AGCT 3 cut(s) 100, 139, 334
AlwI GGATC 1 cut(s) 378
ApoI RAATTY 2 cut(s) 91, 264
AsuC2I CCSGG 1 cut(s) 29
AsuHPI GGTGA 1 cut(s) 283
BccI CCATC 1 cut(s) 361
BceAI ACGGC 1 cut(s) 409
BclI TGATCA 1 cut(s) 352
BcnI CCSGG 1 cut(s) 29
BfaI CTAG 1 cut(s) 41
BfmI CTRYAG 1 cut(s) 321
Bme1390I CCNGG 1 cut(s) 29
BmrFI CCNGG 1 cut(s) 29
BpmI CTGGAG 1 cut(s) 356
BpuMI CCSGG 1 cut(s) 29
BseGI GGATG 1 cut(s) 226
BsiSI CCGG 1 cut(s) 28
BslFI GGGAC 1 cut(s) 329
BsmFI GGGAC 1 cut(s) 329
Bsp143I GATC 2 cut(s) 352, 370
BspHI TCATGA 1 cut(s) 355
BspPI GGATC 1 cut(s) 378
BssMI GATC 2 cut(s) 352, 370
BstC8I GCNNGC 1 cut(s) 102
BstDEI CTNAG 1 cut(s) 190
BstF5I GGATG 1 cut(s) 226
BstKTI GATC 2 cut(s) 355, 373
BstMBI GATC 2 cut(s) 352, 370
BstNSI RCATGY 1 cut(s) 161
BstSCI CCNGG 1 cut(s) 27
BstSFI CTRYAG 1 cut(s) 321
BtsCI GGATG 1 cut(s) 226
Cac8I GCNNGC 1 cut(s) 102
CciI TCATGA 1 cut(s) 355
Csp6I GTAC 1 cut(s) 298
CviAII CATG 5 cut(s) 6, 130, 158, 214, 356
CviJI RGCY 6 cut(s) 100, 114, 139, 204, 334, 396
CviKI_1 RGCY 6 cut(s) 100, 114, 139, 204, 334, 396
CviQI GTAC 1 cut(s) 298
DdeI CTNAG 1 cut(s) 190
DpnI GATC 2 cut(s) 354, 372
DpnII GATC 2 cut(s) 352, 370
FaeI CATG 5 cut(s) 9, 133, 161, 217, 359
FaiI YATR 7 cut(s) 7, 131, 159, 215, 279, 357, 399
FaqI GGGAC 1 cut(s) 329
FatI CATG 5 cut(s) 5, 129, 157, 213, 355
FbaI TGATCA 1 cut(s) 352
FblI GTMKAC 1 cut(s) 324
FokI GGATG 1 cut(s) 233
FspBI CTAG 1 cut(s) 41
GsuI CTGGAG 1 cut(s) 356
HapII CCGG 1 cut(s) 28
Hin1II CATG 5 cut(s) 9, 133, 161, 217, 359
HinfI GANTC 1 cut(s) 37
HpaII CCGG 1 cut(s) 28
HphI GGTGA 1 cut(s) 283
Hpy166II GTNNAC 2 cut(s) 244, 325
Hpy188I TCNGA 1 cut(s) 292
Hpy188III TCNNGA 2 cut(s) 87, 356
Hpy8I GTNNAC 2 cut(s) 244, 325
HpyCH4IV ACGT 1 cut(s) 384
HpyCH4V TGCA 2 cut(s) 133, 161
HpyF3I CTNAG 1 cut(s) 190
HpySE526I ACGT 1 cut(s) 384
Hsp92II CATG 5 cut(s) 9, 133, 161, 217, 359
Ksp22I TGATCA 1 cut(s) 352
Kzo9I GATC 2 cut(s) 352, 370
LpnPI CCDG 2 cut(s) 41, 320
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 384
MaeIII GTNAC 2 cut(s) 59, 180
MalI GATC 2 cut(s) 354, 372
MboI GATC 2 cut(s) 352, 370
MboII GAAGA 1 cut(s) 187
MluCI AATT 7 cut(s) 52, 75, 91, 264, 274, 286, 315
MnlI CCTC 6 cut(s) 102, 210, 215, 247, 331, 352
MspI CCGG 1 cut(s) 28
MspR9I CCNGG 1 cut(s) 29
NciI CCSGG 1 cut(s) 29
NdeII GATC 2 cut(s) 352, 370
NlaIII CATG 5 cut(s) 9, 133, 161, 217, 359
NspI RCATGY 1 cut(s) 161
PagI TCATGA 1 cut(s) 355
PfeI GAWTC 1 cut(s) 37
Psp1406I AACGTT 1 cut(s) 384
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
Sau3AI GATC 2 cut(s) 352, 370
ScrFI CCNGG 1 cut(s) 29
SetI ASST 8 cut(s) 61, 102, 129, 141, 336, 342, 363, 387
SfcI CTRYAG 1 cut(s) 321
Sse9I AATT 7 cut(s) 52, 75, 91, 264, 274, 286, 315
SspMI CTAG 1 cut(s) 41
StyD4I CCNGG 1 cut(s) 27
TaiI ACGT 1 cut(s) 387
TaqI TCGA 1 cut(s) 141
TasI AATT 7 cut(s) 52, 75, 91, 264, 274, 286, 315
TfiI GAWTC 1 cut(s) 37
TspDTI ATGAA 1 cut(s) 188
XapI RAATTY 2 cut(s) 91, 264
XceI RCATGY 1 cut(s) 161
XmiI GTMKAC 1 cut(s) 324
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.