Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0024516

Physical Location & Seq

Genomic Coordinates Reverse (-)

4054654 .. 4056534

Gene Structure 1881 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G035700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGCACCTACGAAGCATTTCACCCAAGAACAGCACATCATCCGAAGCTAAAGAGATAGCCGAGATGATTAAAACACTCGAAAAACAAAGAGATAGGGCTATAAAAAATTTGAAAAATTTAGAACAACTATCTGTAGCTAGCATCAAAGACATGCAAGAAATCATACAAGTCAAAACTAACGATCAATGGAAAGGAAATCAAATTTCCATTGATCCGTACTCTGTAGATCCTTCATCAACAGAGTACAATGAGATTGAAAAAATTGCTGAAGAGCATGACTTGAAAATCATGCCGTACGACATCGACTACGAACTTAAGCAAAACAAAAAAGAAACTATATCTGATATTATTGATCTGCCAAATAAACCGAAAGAAAGACCAACACTTTTGCAGCAGGAGCCTTTAGAGAATGGGTCAACCATCACATATGTTCCTACTAGAAAAGGAACATTGGGCATTGCAAACTATCTCTGCAGGTGTGGCGTGAAGGCTGCTGCCTATAATGTAGCAGTATGCCATGGATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C RecQ_Zn_bind

Protein Analysis

176

Amino Acids

19.85

Weight (kDa)

5.98

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024516)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G155400_v2.0.a1 Prupe.5G035700_v2.0.a1 Prupe.5G035700_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	526
AarI	CACCTGC	1 cut(s)	465
Acc36I	ACCTGC	1 cut(s)	465
AclWI	GGATC	2 cut(s)	206, 221
AcsI	RAATTY	3 cut(s)	106, 115, 201
AcuI	CTGAAG	1 cut(s)	288
AfaI	GTAC	3 cut(s)	218, 245, 296
AflII	CTTAAG	1 cut(s)	314
AgsI	TTSAA	3 cut(s)	112, 257, 283
AluBI	AGCT	2 cut(s)	47, 137
AluI	AGCT	2 cut(s)	47, 137
AlwI	GGATC	2 cut(s)	206, 221
ApeKI	GCWGC	3 cut(s)	391, 491, 494
ApoI	RAATTY	3 cut(s)	106, 115, 201
Asp700I	GAANNNNTTC	1 cut(s)	16
AsuHPI	GGTGA	1 cut(s)	12
AsuNHI	GCTAGC	1 cut(s)	137
BbvI	GCAGC	3 cut(s)	403, 478, 481
BccI	CCATC	1 cut(s)	428
BceAI	ACGGC	1 cut(s)	277
BfaI	CTAG	2 cut(s)	138, 438
BfmI	CTRYAG	3 cut(s)	132, 222, 472
BfrI	CTTAAG	1 cut(s)	314
BfuAI	ACCTGC	1 cut(s)	465
BisI	GCNGC	3 cut(s)	392, 492, 495
BlsI	GCNGC	3 cut(s)	393, 493, 496
BmiI	GGNNCC	1 cut(s)	399
BmsI	GCATC	1 cut(s)	150
BmtI	GCTAGC	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	517
Bse3DI	GCAATG	1 cut(s)	456
BseDI	CCNNGG	1 cut(s)	517
BseGI	GGATG	1 cut(s)	38
BseMI	GCAATG	1 cut(s)	456
BseXI	GCAGC	3 cut(s)	403, 478, 481
BsiWI	CGTACG	1 cut(s)	294
Bsp143I	GATC	4 cut(s)	181, 211, 226, 352
Bsp19I	CCATGG	1 cut(s)	517
BspLI	GGNNCC	1 cut(s)	399
BspMAI	CTGCAG	1 cut(s)	476
BspMI	ACCTGC	1 cut(s)	465
BspOI	GCTAGC	1 cut(s)	141
BspPI	GGATC	2 cut(s)	206, 221
BspQI	GCTCTTC	1 cut(s)	264
BspTI	CTTAAG	1 cut(s)	314
BsrDI	GCAATG	1 cut(s)	456
BssECI	CCNNGG	1 cut(s)	517
BssMI	GATC	4 cut(s)	181, 211, 226, 352
BssT1I	CCWWGG	1 cut(s)	517
Bst6I	CTCTTC	1 cut(s)	264
BstAFI	CTTAAG	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	139
BstDSI	CCRYGG	1 cut(s)	517
BstF5I	GGATG	1 cut(s)	38
BstKTI	GATC	4 cut(s)	184, 214, 229, 355
BstMBI	GATC	4 cut(s)	181, 211, 226, 352
BstMWI	GCNNNNNNNGC	2 cut(s)	397, 480
BstNSI	RCATGY	1 cut(s)	154
BstSFI	CTRYAG	3 cut(s)	132, 222, 472
BstV1I	GCAGC	3 cut(s)	403, 478, 481
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BtgI	CCRYGG	1 cut(s)	517
BtsCI	GGATG	1 cut(s)	38
BveI	ACCTGC	1 cut(s)	465
Cac8I	GCNNGC	1 cut(s)	139
Csp6I	GTAC	3 cut(s)	217, 244, 295
CviAII	CATG	4 cut(s)	151, 275, 289, 518
CviJI	RGCY	6 cut(s)	47, 59, 98, 137, 400, 491
CviKI_1	RGCY	6 cut(s)	47, 59, 98, 137, 400, 491
CviQI	GTAC	3 cut(s)	217, 244, 295
DpnI	GATC	4 cut(s)	183, 213, 228, 354
DpnII	GATC	4 cut(s)	181, 211, 226, 352
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco130I	CCWWGG	1 cut(s)	517
Eco57I	CTGAAG	1 cut(s)	288
EcoT14I	CCWWGG	1 cut(s)	517
ErhI	CCWWGG	1 cut(s)	517
FaeI	CATG	4 cut(s)	154, 278, 292, 521
FatI	CATG	4 cut(s)	150, 274, 288, 517
FauNDI	CATATG	1 cut(s)	427
Fnu4HI	GCNGC	3 cut(s)	392, 492, 495
FokI	GGATG	1 cut(s)	25
Fsp4HI	GCNGC	3 cut(s)	392, 492, 495
FspBI	CTAG	2 cut(s)	138, 438
GluI	GCNGC	3 cut(s)	392, 492, 495
Hin1II	CATG	4 cut(s)	154, 278, 292, 521
HincII	GTYRAC	1 cut(s)	417
HindII	GTYRAC	1 cut(s)	417
HphI	GGTGA	1 cut(s)	12
Hpy166II	GTNNAC	1 cut(s)	417
Hpy188I	TCNGA	2 cut(s)	43, 343
Hpy8I	GTNNAC	1 cut(s)	417
HpyAV	CCTTC	2 cut(s)	240, 481
HpyCH4V	TGCA	5 cut(s)	4, 154, 391, 461, 474
HpyF10VI	GCNNNNNNNGC	2 cut(s)	397, 480
Hsp92II	CATG	4 cut(s)	154, 278, 292, 521
Kzo9I	GATC	4 cut(s)	181, 211, 226, 352
LguI	GCTCTTC	1 cut(s)	264
LmnI	GCTCC	1 cut(s)	397
LpnPI	CCDG	2 cut(s)	380, 460
Lsp1109I	GCAGC	3 cut(s)	403, 478, 481
LweI	GCATC	1 cut(s)	150
MaeI	CTAG	2 cut(s)	138, 438
MalI	GATC	4 cut(s)	183, 213, 228, 354
MboI	GATC	4 cut(s)	181, 211, 226, 352
MboII	GAAGA	1 cut(s)	281
MflI	RGATCY	1 cut(s)	226
MluCI	AATT	4 cut(s)	106, 115, 201, 261
MroXI	GAANNNNTTC	1 cut(s)	16
MseI	TTAA	2 cut(s)	69, 315
MspCI	CTTAAG	1 cut(s)	314
MwoI	GCNNNNNNNGC	2 cut(s)	397, 480
NcoI	CCATGG	1 cut(s)	517
NdeI	CATATG	1 cut(s)	427
NdeII	GATC	4 cut(s)	181, 211, 226, 352
NheI	GCTAGC	1 cut(s)	137
NlaIII	CATG	4 cut(s)	154, 278, 292, 521
NlaIV	GGNNCC	1 cut(s)	399
NmeAIII	GCCGAG	1 cut(s)	85
NspI	RCATGY	1 cut(s)	154
PaqCI	CACCTGC	1 cut(s)	465
PciSI	GCTCTTC	1 cut(s)	264
PdmI	GAANNNNTTC	1 cut(s)	16
Pfl23II	CGTACG	1 cut(s)	294
PkrI	GCNGC	3 cut(s)	393, 493, 496
PsiI	TTATAA	1 cut(s)	526
PspLI	CGTACG	1 cut(s)	294
PspN4I	GGNNCC	1 cut(s)	399
PstI	CTGCAG	1 cut(s)	476
PsuI	RGATCY	1 cut(s)	226
RsaI	GTAC	3 cut(s)	218, 245, 296
RsaNI	GTAC	3 cut(s)	217, 244, 295
SapI	GCTCTTC	1 cut(s)	264
SaqAI	TTAA	2 cut(s)	69, 315
SatI	GCNGC	3 cut(s)	392, 492, 495
Sau3AI	GATC	4 cut(s)	181, 211, 226, 352
SetI	ASST	4 cut(s)	9, 49, 139, 479
SfaNI	GCATC	1 cut(s)	150
SfcI	CTRYAG	3 cut(s)	132, 222, 472
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	4 cut(s)	106, 115, 201, 261
SspMI	CTAG	2 cut(s)	138, 438
StyI	CCWWGG	1 cut(s)	517
TaqI	TCGA	2 cut(s)	78, 303
TasI	AATT	4 cut(s)	106, 115, 201, 261
TatI	WGTACW	1 cut(s)	243
Tru1I	TTAA	2 cut(s)	69, 315
Tru9I	TTAA	2 cut(s)	69, 315
TseI	GCWGC	3 cut(s)	391, 491, 494
TspDTI	ATGAA	1 cut(s)	222
TspGWI	ACGGA	1 cut(s)	204
Vha464I	CTTAAG	1 cut(s)	314
XapI	RAATTY	3 cut(s)	106, 115, 201
XceI	RCATGY	1 cut(s)	154
XmnI	GAANNNNTTC	1 cut(s)	16
XspI	CTAG	2 cut(s)	138, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.