Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked
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| Species | Orthologous Gene IDs |
|---|---|
| prunus_persica | Prupe.2G185300_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr5g0037651 RchiOBHm_Chr5g0045211 |
| rosa_laevigata | RLG00000034346 |
| rosa_samantha | Rh5AG303000 Rh5BG257400 Rh5BG311600 |
| rosa_wichuraiana | Rw5G023680 Rw5G028120 Rw5G028460 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 4 cut(s) | 177, 405, 633, 861 |
| AccI | GTMKAC | 1 cut(s) | 878 |
| AccIII | TCCGGA | 1 cut(s) | 796 |
| AclWI | GGATC | 5 cut(s) | 100, 113, 556, 569, 807 |
| AfaI | GTAC | 2 cut(s) | 847, 894 |
| AgsI | TTSAA | 4 cut(s) | 92, 320, 548, 701 |
| AjnI | CCWGG | 1 cut(s) | 849 |
| AluBI | AGCT | 5 cut(s) | 148, 376, 513, 604, 767 |
| AluI | AGCT | 5 cut(s) | 148, 376, 513, 604, 767 |
| Alw21I | GWGCWC | 1 cut(s) | 515 |
| AlwI | GGATC | 5 cut(s) | 100, 113, 556, 569, 807 |
| Aor13HI | TCCGGA | 1 cut(s) | 796 |
| ApeKI | GCWGC | 3 cut(s) | 145, 373, 601 |
| AspS9I | GGNCC | 1 cut(s) | 390 |
| AvaII | GGWCC | 1 cut(s) | 390 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 829, 862 |
| BamHI | GGATCC | 2 cut(s) | 105, 561 |
| BanII | GRGCYC | 1 cut(s) | 515 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 885, 917 |
| BbsI | GAAGAC | 2 cut(s) | 722, 893 |
| Bbv12I | GWGCWC | 1 cut(s) | 515 |
| BbvI | GCAGC | 3 cut(s) | 157, 385, 613 |
| BccI | CCATC | 4 cut(s) | 149, 377, 500, 605 |
| BciT130I | CCWGG | 1 cut(s) | 851 |
| BciVI | GTATCC | 3 cut(s) | 55, 283, 800 |
| BfaI | CTAG | 2 cut(s) | 377, 890 |
| BfuI | GTATCC | 3 cut(s) | 55, 283, 800 |
| BglII | AGATCT | 1 cut(s) | 462 |
| BisI | GCNGC | 3 cut(s) | 146, 374, 602 |
| BlsI | GCNGC | 3 cut(s) | 147, 375, 603 |
| BmcAI | AGTACT | 1 cut(s) | 894 |
| Bme1390I | CCNGG | 1 cut(s) | 851 |
| Bme18I | GGWCC | 1 cut(s) | 390 |
| BmgT120I | GGNCC | 1 cut(s) | 390 |
| BmiI | GGNNCC | 5 cut(s) | 107, 392, 420, 563, 742 |
| BmrFI | CCNGG | 1 cut(s) | 851 |
| BmsI | GCATC | 4 cut(s) | 211, 219, 439, 667 |
| BpiI | GAAGAC | 2 cut(s) | 722, 893 |
| BpmI | CTGGAG | 2 cut(s) | 65, 293 |
| BpuEI | CTTGAG | 3 cut(s) | 170, 626, 854 |
| BsaJI | CCNNGG | 1 cut(s) | 849 |
| BsaWI | WCCGGW | 1 cut(s) | 796 |
| Bse1I | ACTGG | 2 cut(s) | 31, 259 |
| Bse3DI | GCAATG | 1 cut(s) | 535 |
| BseAI | TCCGGA | 1 cut(s) | 796 |
| BseBI | CCWGG | 1 cut(s) | 851 |
| BseDI | CCNNGG | 1 cut(s) | 849 |
| BseGI | GGATG | 5 cut(s) | 160, 234, 388, 616, 864 |
| BseMI | GCAATG | 1 cut(s) | 535 |
| BseNI | ACTGG | 2 cut(s) | 31, 259 |
| BseXI | GCAGC | 3 cut(s) | 157, 385, 613 |
| BseYI | CCCAGC | 1 cut(s) | 821 |
| BsgI | GTGCAG | 1 cut(s) | 869 |
| BsiHKAI | GWGCWC | 1 cut(s) | 515 |
| BsiSI | CCGG | 1 cut(s) | 797 |
| BsmI | GAATGC | 1 cut(s) | 690 |
| Bsp1286I | GDGCHC | 1 cut(s) | 515 |
| Bsp13I | TCCGGA | 1 cut(s) | 796 |
| Bsp143I | GATC | 4 cut(s) | 105, 462, 561, 799 |
| BspEI | TCCGGA | 1 cut(s) | 796 |
| BspLI | GGNNCC | 5 cut(s) | 107, 392, 420, 563, 742 |
| BspPI | GGATC | 5 cut(s) | 100, 113, 556, 569, 807 |
| BsrDI | GCAATG | 1 cut(s) | 535 |
| BsrI | ACTGG | 2 cut(s) | 31, 259 |
| BssECI | CCNNGG | 1 cut(s) | 849 |
| BssMI | GATC | 4 cut(s) | 105, 462, 561, 799 |
| Bst2UI | CCWGG | 1 cut(s) | 851 |
| BstF5I | GGATG | 5 cut(s) | 160, 234, 388, 616, 864 |
| BstKTI | GATC | 4 cut(s) | 108, 465, 564, 802 |
| BstMBI | GATC | 4 cut(s) | 105, 462, 561, 799 |
| BstNI | CCWGG | 1 cut(s) | 851 |
| BstSCI | CCNGG | 1 cut(s) | 849 |
| BstV1I | GCAGC | 3 cut(s) | 157, 385, 613 |
| BstV2I | GAAGAC | 2 cut(s) | 722, 893 |
| BstX2I | RGATCY | 3 cut(s) | 105, 462, 561 |
| BstYI | RGATCY | 3 cut(s) | 105, 462, 561 |
| BsuI | GTATCC | 3 cut(s) | 55, 283, 800 |
| BtsCI | GGATG | 5 cut(s) | 160, 234, 388, 616, 864 |
| Cfr13I | GGNCC | 1 cut(s) | 390 |
| Csp6I | GTAC | 2 cut(s) | 846, 893 |
| CviQI | GTAC | 2 cut(s) | 846, 893 |
| DpnI | GATC | 4 cut(s) | 107, 464, 563, 801 |
| DpnII | GATC | 4 cut(s) | 105, 462, 561, 799 |
| Ecl136II | GAGCTC | 1 cut(s) | 513 |
| Eco24I | GRGCYC | 1 cut(s) | 515 |
| Eco47I | GGWCC | 1 cut(s) | 390 |
| Eco53kI | GAGCTC | 1 cut(s) | 513 |
| EcoICRI | GAGCTC | 1 cut(s) | 513 |
| EcoO109I | RGGNCCY | 1 cut(s) | 390 |
| EcoRII | CCWGG | 1 cut(s) | 849 |
| EcoT38I | GRGCYC | 1 cut(s) | 515 |
| FaiI | YATR | 8 cut(s) | 68, 177, 296, 405, 458, 524, 633, 861 |
| FblI | GTMKAC | 1 cut(s) | 878 |
| Fnu4HI | GCNGC | 3 cut(s) | 146, 374, 602 |
| FokI | GGATG | 5 cut(s) | 167, 241, 395, 623, 851 |
| FriOI | GRGCYC | 1 cut(s) | 515 |
| Fsp4HI | GCNGC | 3 cut(s) | 146, 374, 602 |
| FspBI | CTAG | 2 cut(s) | 377, 890 |
| GluI | GCNGC | 3 cut(s) | 146, 374, 602 |
| GsaI | CCCAGC | 1 cut(s) | 825 |
| GsuI | CTGGAG | 2 cut(s) | 65, 293 |
| HapII | CCGG | 1 cut(s) | 797 |
| HinfI | GANTC | 7 cut(s) | 88, 191, 316, 333, 544, 647, 875 |
| HpaII | CCGG | 1 cut(s) | 797 |
| Hpy166II | GTNNAC | 1 cut(s) | 879 |
| Hpy188I | TCNGA | 5 cut(s) | 61, 289, 517, 708, 745 |
| Hpy8I | GTNNAC | 1 cut(s) | 879 |
| HpyAV | CCTTC | 9 cut(s) | 73, 95, 181, 409, 529, 551, 637, 677, 683 |
| HpyCH4IV | ACGT | 2 cut(s) | 844, 915 |
| HpySE526I | ACGT | 2 cut(s) | 844, 915 |
| Kpn2I | TCCGGA | 1 cut(s) | 796 |
| Kzo9I | GATC | 4 cut(s) | 105, 462, 561, 799 |
| Lsp1109I | GCAGC | 3 cut(s) | 157, 385, 613 |
| LweI | GCATC | 4 cut(s) | 211, 219, 439, 667 |
| MaeI | CTAG | 2 cut(s) | 377, 890 |
| MaeII | ACGT | 2 cut(s) | 844, 915 |
| MaeIII | GTNAC | 1 cut(s) | 911 |
| MalI | GATC | 4 cut(s) | 107, 464, 563, 801 |
| MboI | GATC | 4 cut(s) | 105, 462, 561, 799 |
| MboII | GAAGA | 4 cut(s) | 203, 325, 727, 893 |
| MfeI | CAATTG | 1 cut(s) | 750 |
| MflI | RGATCY | 3 cut(s) | 105, 462, 561 |
| MhlI | GDGCHC | 1 cut(s) | 515 |
| MluCI | AATT | 1 cut(s) | 750 |
| MlyI | GAGTC | 1 cut(s) | 884 |
| MroI | TCCGGA | 1 cut(s) | 796 |
| MseI | TTAA | 4 cut(s) | 218, 243, 471, 919 |
| MspI | CCGG | 1 cut(s) | 797 |
| MspR9I | CCNGG | 1 cut(s) | 851 |
| MunI | CAATTG | 1 cut(s) | 750 |
| Mva1269I | GAATGC | 1 cut(s) | 690 |
| MvaI | CCWGG | 1 cut(s) | 851 |
| NdeII | GATC | 4 cut(s) | 105, 462, 561, 799 |
| NlaIV | GGNNCC | 5 cut(s) | 107, 392, 420, 563, 742 |
| NmuCI | GTSAC | 1 cut(s) | 911 |
| PctI | GAATGC | 1 cut(s) | 690 |
| PfeI | GAWTC | 6 cut(s) | 88, 191, 316, 333, 544, 647 |
| PflFI | GACNNNGTC | 1 cut(s) | 302 |
| PkrI | GCNGC | 3 cut(s) | 147, 375, 603 |
| PleI | GAGTC | 1 cut(s) | 883 |
| PpsI | GAGTC | 1 cut(s) | 883 |
| PpuMI | RGGWCCY | 1 cut(s) | 390 |
| PsiI | TTATAA | 4 cut(s) | 177, 405, 633, 861 |
| Psp124BI | GAGCTC | 1 cut(s) | 515 |
| Psp5II | RGGWCCY | 1 cut(s) | 390 |
| Psp6I | CCWGG | 1 cut(s) | 849 |
| PspFI | CCCAGC | 1 cut(s) | 821 |
| PspGI | CCWGG | 1 cut(s) | 849 |
| PspN4I | GGNNCC | 5 cut(s) | 107, 392, 420, 563, 742 |
| PspPI | GGNCC | 1 cut(s) | 390 |
| PspPPI | RGGWCCY | 1 cut(s) | 390 |
| PsuI | RGATCY | 3 cut(s) | 105, 462, 561 |
| PsyI | GACNNNGTC | 1 cut(s) | 302 |
| RsaI | GTAC | 2 cut(s) | 847, 894 |
| RsaNI | GTAC | 2 cut(s) | 846, 893 |
| SacI | GAGCTC | 1 cut(s) | 515 |
| SaqAI | TTAA | 4 cut(s) | 218, 243, 471, 919 |
| SatI | GCNGC | 3 cut(s) | 146, 374, 602 |
| Sau3AI | GATC | 4 cut(s) | 105, 462, 561, 799 |
| Sau96I | GGNCC | 1 cut(s) | 390 |
| ScaI | AGTACT | 1 cut(s) | 894 |
| SchI | GAGTC | 1 cut(s) | 884 |
| ScrFI | CCNGG | 1 cut(s) | 851 |
| SduI | GDGCHC | 1 cut(s) | 515 |
| SfaNI | GCATC | 4 cut(s) | 211, 219, 439, 667 |
| SinI | GGWCC | 1 cut(s) | 390 |
| SmlI | CTYRAG | 3 cut(s) | 149, 605, 833 |
| SmoI | CTYRAG | 3 cut(s) | 149, 605, 833 |
| Sse9I | AATT | 1 cut(s) | 750 |
| SspI | AATATT | 2 cut(s) | 9, 237 |
| SspMI | CTAG | 2 cut(s) | 377, 890 |
| SstI | GAGCTC | 1 cut(s) | 515 |
| StyD4I | CCNGG | 1 cut(s) | 849 |
| TaiI | ACGT | 2 cut(s) | 847, 918 |
| TaqI | TCGA | 1 cut(s) | 214 |
| TasI | AATT | 1 cut(s) | 750 |
| TatI | WGTACW | 1 cut(s) | 892 |
| TfiI | GAWTC | 6 cut(s) | 88, 191, 316, 333, 544, 647 |
| Tru1I | TTAA | 4 cut(s) | 218, 243, 471, 919 |
| Tru9I | TTAA | 4 cut(s) | 218, 243, 471, 919 |
| TseFI | GTSAC | 1 cut(s) | 911 |
| TseI | GCWGC | 3 cut(s) | 145, 373, 601 |
| Tsp45I | GTSAC | 1 cut(s) | 911 |
| TspGWI | ACGGA | 2 cut(s) | 431, 855 |
| Tth111I | GACNNNGTC | 1 cut(s) | 302 |
| VpaK11BI | GGWCC | 1 cut(s) | 390 |
| XmiI | GTMKAC | 1 cut(s) | 878 |
| XspI | CTAG | 2 cut(s) | 377, 890 |
| ZrmI | AGTACT | 1 cut(s) | 894 |