Rh5BG311600

Ubiquitin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0018274
Physical Location & Seq
Forward (+)
41054695 .. 41055959
1265 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG311600.1

Sequence Viewer

Length: 921 bp
ATGCAGATCTTCGTCAAAACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTCCGACACCATCGACAACGTCAAGGCCAAAATCCAAGACAAGGAGGGCATCCCGCCGGACCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGGACCCTCGCCGATTACAACATCCAGAAGGAGTCGACTCTCCATCTGGTCCTCCGTCTCCGCGGAGGTATGCAGATCTTCGTGAAAACCCTCACCGGGAAGACGATCACTTTGGAGGTCGAGAGCTCTGACACAATCGACAACGTCAAGGCGAAAATTCAAGACAAGGAGGGGATTCCTCCGGACCAGCAGAGGCTGATCTTCGCCGGAAAGCAGTTGGAGGACGGCCGGACCCTCGCCGATTATAATATCCAGAAGGAATCGACTCTGCATTTGGTCCTTCGTCTCCGTGGAGGTATGCAGATCTTCGTCAAAACCCTAACGGGAAAGACGATCACTCTCGAGGTGGAGAGCTCTGATACGATCGATAATGTCAAGGCGAAAATTCAAGACAAGGAAGGCATTCCTCCAGATCAGCAGAGGTTGATCTTTGCCGGAAAGCAATTGGAGGATGGCCGGACTCTTGCTGATTACAATATCCAGAAGGAGTCAACTCTTCATCTTGTGCTCAGGCTTCGCGGGGGTATGCAGATCTTTGTGAAGACTCTGACGGGGAAAACGATCACTCTGGAGGTTGAGAGCTCGGATACTATTGACAATGTCAAAGCAAAGATTCAAGACAAGGAGGGTATCCCACCAGACCAGCAGAGGTTGATCTTTGCAGGAAAGCAACTGGAGGATGGCCGCACTTTGGCTGATTACAACATTCAAAAGGAGTCTACCCTCCACCTTGTACTCCGTCTCCGCGGTGGTGATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03320 map03320
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

306

Amino Acids

34.26

Weight (kDa)

6.48

Isoelectric Point (pI)

29.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 1 - 71 5.9e-17 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 3 - 74 7.4e-32 Ubiquitin family
Rad60-SLD PF11976 77 - 147 5.9e-17 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 79 - 150 7.4e-32 Ubiquitin family
Rad60-SLD PF11976 153 - 223 5.9e-17 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 155 - 226 7.4e-32 Ubiquitin family
Rad60-SLD PF11976 229 - 299 5.9e-17 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 231 - 302 7.4e-32 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018274)

Species Orthologous Gene IDs
prunus_persica Prupe.2G185300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0037651 RchiOBHm_Chr5g0045211
rosa_laevigata RLG00000034346
rosa_samantha Rh5AG303000 Rh5BG257400 Rh5BG311600
rosa_wichuraiana Rw5G023680 Rw5G028120 Rw5G028460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 405
AbsI CCTCGAGG 1 cut(s) 44
AccI GTMKAC 2 cut(s) 194, 878
AccII CGCG 3 cut(s) 222, 678, 906
AccIII TCCGGA 1 cut(s) 340
AciI CCGC 7 cut(s) 110, 220, 222, 678, 844, 904, 906
AcoI YGGCCR 4 cut(s) 157, 385, 613, 841
AcsI RAATTY 2 cut(s) 315, 543
AfaI GTAC 1 cut(s) 894
AfiI CCNNNNNNNGG 3 cut(s) 97, 255, 850
AgsI TTSAA 4 cut(s) 320, 548, 776, 869
AluBI AGCT 5 cut(s) 57, 148, 285, 513, 741
AluI AGCT 5 cut(s) 57, 148, 285, 513, 741
Alw21I GWGCWC 5 cut(s) 59, 287, 515, 669, 743
Alw26I GTCTC 4 cut(s) 131, 221, 449, 905
AlwNI CAGNNNCTG 1 cut(s) 355
Ama87I CYCGRG 3 cut(s) 44, 149, 500
Aor13HI TCCGGA 1 cut(s) 340
AoxI GGCC 5 cut(s) 81, 157, 385, 613, 841
ApeKI GCWGC 2 cut(s) 121, 145
ApoI RAATTY 2 cut(s) 315, 543
ArsI GACNNNNNNTTYG 4 cut(s) 253, 285, 415, 447
Asp700I GAANNNNTTC 1 cut(s) 561
AspS9I GGNCC 6 cut(s) 115, 162, 208, 343, 390, 436
AsuC2I CCSGG 1 cut(s) 256
AsuHPI GGTGA 2 cut(s) 31, 244
AvaI CYCGRG 3 cut(s) 44, 149, 500
AvaII GGWCC 6 cut(s) 115, 162, 208, 343, 390, 436
BanII GRGCYC 4 cut(s) 59, 287, 515, 743
BbsI GAAGAC 2 cut(s) 266, 707
Bbv12I GWGCWC 5 cut(s) 59, 287, 515, 669, 743
BbvI GCAGC 2 cut(s) 133, 157
BccI CCATC 5 cut(s) 44, 74, 210, 605, 833
BceAI ACGGC 2 cut(s) 172, 400
BciVI GTATCC 2 cut(s) 739, 800
BcnI CCSGG 1 cut(s) 256
BcoDI GTCTC 4 cut(s) 131, 221, 449, 905
BfuI GTATCC 2 cut(s) 739, 800
BglII AGATCT 4 cut(s) 6, 234, 462, 690
BisI GCNGC 3 cut(s) 122, 146, 844
BlsI GCNGC 3 cut(s) 123, 147, 845
Bme1390I CCNGG 1 cut(s) 256
Bme18I GGWCC 6 cut(s) 115, 162, 208, 343, 390, 436
BmeT110I CYCGRG 3 cut(s) 44, 149, 500
BmgT120I GGNCC 6 cut(s) 115, 162, 208, 343, 390, 436
BmiI GGNNCC 2 cut(s) 164, 392
BmrFI CCNGG 1 cut(s) 256
BmsI GCATC 1 cut(s) 114
BpiI GAAGAC 2 cut(s) 266, 707
BpmI CTGGAG 3 cut(s) 552, 749, 854
Bpu10I CCTNAGC 1 cut(s) 668
BpuMI CCSGG 1 cut(s) 256
Bsa29I ATCGAT 1 cut(s) 525
BsaJI CCNNGG 3 cut(s) 220, 448, 904
BsaWI WCCGGW 1 cut(s) 340
BsaXI ACNNNNNCTCC 2 cut(s) 885, 915
Bsc4I CCNNNNNNNGG 3 cut(s) 97, 255, 850
Bse118I RCCGGY 1 cut(s) 26
Bse1I ACTGG 1 cut(s) 837
BseAI TCCGGA 1 cut(s) 340
BseCI ATCGAT 1 cut(s) 525
BseDI CCNNGG 3 cut(s) 220, 448, 904
BseGI GGATG 4 cut(s) 105, 180, 616, 844
BseLI CCNNNNNNNGG 3 cut(s) 97, 255, 850
BseMII CTCAG 1 cut(s) 682
BseNI ACTGG 1 cut(s) 837
BseX3I CGGCCG 2 cut(s) 157, 385
BseXI GCAGC 2 cut(s) 133, 157
Bsh1236I CGCG 3 cut(s) 222, 678, 906
Bsh1285I CGRYCG 3 cut(s) 160, 388, 525
BshFI GGCC 5 cut(s) 83, 159, 387, 615, 843
BshVI ATCGAT 1 cut(s) 525
BsiEI CGRYCG 3 cut(s) 160, 388, 525
BsiHKAI GWGCWC 5 cut(s) 59, 287, 515, 669, 743
BsiHKCI CYCGRG 3 cut(s) 44, 149, 500
BslI CCNNNNNNNGG 3 cut(s) 97, 255, 850
BsmAI GTCTC 4 cut(s) 131, 221, 449, 905
BsmBI CGTCTC 4 cut(s) 131, 221, 449, 905
BsmI GAATGC 1 cut(s) 561
BsnI GGCC 5 cut(s) 83, 159, 387, 615, 843
BsoBI CYCGRG 3 cut(s) 44, 149, 500
Bsp1286I GDGCHC 5 cut(s) 59, 287, 515, 669, 743
Bsp13I TCCGGA 1 cut(s) 340
BspACI CCGC 7 cut(s) 110, 220, 222, 678, 844, 904, 906
BspANI GGCC 5 cut(s) 83, 159, 387, 615, 843
BspCNI CTCAG 1 cut(s) 681
BspDI ATCGAT 1 cut(s) 525
BspEI TCCGGA 1 cut(s) 340
BspFNI CGCG 3 cut(s) 222, 678, 906
BspLI GGNNCC 2 cut(s) 164, 392
BsrFI RCCGGY 1 cut(s) 26
BsrI ACTGG 1 cut(s) 837
BssAI RCCGGY 1 cut(s) 26
BssECI CCNNGG 3 cut(s) 220, 448, 904
Bst6I CTCTTC 1 cut(s) 660
BstDEI CTNAG 1 cut(s) 668
BstDSI CCRYGG 3 cut(s) 220, 448, 904
BstF5I GGATG 4 cut(s) 105, 180, 616, 844
BstFNI CGCG 3 cut(s) 222, 678, 906
BstMAI GTCTC 4 cut(s) 131, 221, 449, 905
BstMCI CGRYCG 3 cut(s) 160, 388, 525
BstMWI GCNNNNNNNGC 1 cut(s) 118
BstSCI CCNGG 1 cut(s) 254
BstUI CGCG 3 cut(s) 222, 678, 906
BstV1I GCAGC 2 cut(s) 133, 157
BstV2I GAAGAC 2 cut(s) 266, 707
BstX2I RGATCY 4 cut(s) 6, 234, 462, 690
BstYI RGATCY 4 cut(s) 6, 234, 462, 690
BstZI CGGCCG 2 cut(s) 157, 385
Bsu15I ATCGAT 1 cut(s) 525
BsuI GTATCC 2 cut(s) 739, 800
BsuRI GGCC 5 cut(s) 83, 159, 387, 615, 843
BsuTUI ATCGAT 1 cut(s) 525
BtgI CCRYGG 3 cut(s) 220, 448, 904
BtsCI GGATG 4 cut(s) 105, 180, 616, 844
CaiI CAGNNNCTG 1 cut(s) 355
Cfr10I RCCGGY 1 cut(s) 26
Cfr13I GGNCC 6 cut(s) 115, 162, 208, 343, 390, 436
Cfr42I CCGCGG 2 cut(s) 223, 907
ClaI ATCGAT 1 cut(s) 525
CseI GACGC 1 cut(s) 113
Csp6I GTAC 1 cut(s) 893
CviQI GTAC 1 cut(s) 893
DdeI CTNAG 1 cut(s) 668
EaeI YGGCCR 4 cut(s) 157, 385, 613, 841
EagI CGGCCG 2 cut(s) 157, 385
Eam1104I CTCTTC 1 cut(s) 660
EarI CTCTTC 1 cut(s) 660
Ecl136II GAGCTC 4 cut(s) 57, 285, 513, 741
EclXI CGGCCG 2 cut(s) 157, 385
Eco24I GRGCYC 4 cut(s) 59, 287, 515, 743
Eco47I GGWCC 6 cut(s) 115, 162, 208, 343, 390, 436
Eco52I CGGCCG 2 cut(s) 157, 385
Eco53kI GAGCTC 4 cut(s) 57, 285, 513, 741
Eco88I CYCGRG 3 cut(s) 44, 149, 500
EcoICRI GAGCTC 4 cut(s) 57, 285, 513, 741
EcoT38I GRGCYC 4 cut(s) 59, 287, 515, 743
Esp3I CGTCTC 4 cut(s) 131, 221, 449, 905
FaiI YATR 4 cut(s) 230, 405, 458, 686
FauI CCCGC 2 cut(s) 117, 671
FblI GTMKAC 2 cut(s) 194, 878
Fnu4HI GCNGC 3 cut(s) 122, 146, 844
FokI GGATG 4 cut(s) 92, 167, 623, 851
FriOI GRGCYC 4 cut(s) 59, 287, 515, 743
Fsp4HI GCNGC 3 cut(s) 122, 146, 844
GluI GCNGC 3 cut(s) 122, 146, 844
GsuI CTGGAG 3 cut(s) 552, 749, 854
HaeIII GGCC 5 cut(s) 83, 159, 387, 615, 843
HgaI GACGC 1 cut(s) 113
HincII GTYRAC 2 cut(s) 195, 651
HindII GTYRAC 2 cut(s) 195, 651
HphI GGTGA 2 cut(s) 31, 244
Hpy166II GTNNAC 3 cut(s) 195, 651, 879
Hpy188I TCNGA 5 cut(s) 61, 289, 517, 708, 745
Hpy8I GTNNAC 3 cut(s) 195, 651, 879
HpyAV CCTTC 5 cut(s) 181, 409, 449, 551, 637
HpyCH4IV ACGT 2 cut(s) 75, 303
HpyCH4V TGCA 6 cut(s) 4, 232, 430, 460, 688, 821
HpyF10VI GCNNNNNNNGC 1 cut(s) 118
HpyF3I CTNAG 1 cut(s) 668
HpySE526I ACGT 2 cut(s) 75, 303
Kpn2I TCCGGA 1 cut(s) 340
KspI CCGCGG 2 cut(s) 223, 907
LmnI GCTCC 1 cut(s) 62
Lsp1109I GCAGC 2 cut(s) 133, 157
LweI GCATC 1 cut(s) 114
MaeII ACGT 2 cut(s) 75, 303
MboII GAAGA 7 cut(s) 124, 229, 271, 352, 457, 647, 712
MfeI CAATTG 1 cut(s) 602
MflI RGATCY 4 cut(s) 6, 234, 462, 690
MhlI GDGCHC 5 cut(s) 59, 287, 515, 669, 743
MluCI AATT 3 cut(s) 315, 543, 602
MlyI GAGTC 7 cut(s) 190, 200, 418, 613, 656, 697, 884
MmeI TCCRAC 2 cut(s) 84, 357
MroI TCCGGA 1 cut(s) 340
MroXI GAANNNNTTC 1 cut(s) 561
MspA1I CMGCKG 2 cut(s) 222, 906
MspR9I CCNGG 1 cut(s) 256
MunI CAATTG 1 cut(s) 602
Mva1269I GAATGC 1 cut(s) 561
MvnI CGCG 3 cut(s) 222, 678, 906
MwoI GCNNNNNNNGC 1 cut(s) 118
NciI CCSGG 1 cut(s) 256
NlaIV GGNNCC 2 cut(s) 164, 392
PaeR7I CTCGAG 3 cut(s) 44, 149, 500
PcsI WCGNNNNNNNCGW 3 cut(s) 57, 488, 716
PctI GAATGC 1 cut(s) 561
PdmI GAANNNNTTC 1 cut(s) 561
PfeI GAWTC 3 cut(s) 334, 419, 772
PflFI GACNNNGTC 3 cut(s) 74, 302, 758
PkrI GCNGC 3 cut(s) 123, 147, 845
Ple19I CGATCG 1 cut(s) 525
PleI GAGTC 7 cut(s) 190, 199, 418, 613, 655, 697, 883
PpsI GAGTC 7 cut(s) 190, 199, 418, 613, 655, 697, 883
PsiI TTATAA 1 cut(s) 405
Psp124BI GAGCTC 4 cut(s) 59, 287, 515, 743
PspN4I GGNNCC 2 cut(s) 164, 392
PspPI GGNCC 6 cut(s) 115, 162, 208, 343, 390, 436
PspXI VCTCGAGB 2 cut(s) 44, 149
PstNI CAGNNNCTG 1 cut(s) 355
PsuI RGATCY 4 cut(s) 6, 234, 462, 690
PsyI GACNNNGTC 3 cut(s) 74, 302, 758
PvuI CGATCG 1 cut(s) 525
RsaI GTAC 1 cut(s) 894
RsaNI GTAC 1 cut(s) 893
SacI GAGCTC 4 cut(s) 59, 287, 515, 743
SacII CCGCGG 2 cut(s) 223, 907
SalI GTCGAC 1 cut(s) 193
SatI GCNGC 3 cut(s) 122, 146, 844
Sau96I GGNCC 6 cut(s) 115, 162, 208, 343, 390, 436
SchI GAGTC 7 cut(s) 190, 200, 418, 613, 656, 697, 884
ScrFI CCNGG 1 cut(s) 256
SduI GDGCHC 5 cut(s) 59, 287, 515, 669, 743
SfaNI GCATC 1 cut(s) 114
Sfr274I CTCGAG 3 cut(s) 44, 149, 500
Sfr303I CCGCGG 2 cut(s) 223, 907
SgrBI CCGCGG 2 cut(s) 223, 907
SinI GGWCC 6 cut(s) 115, 162, 208, 343, 390, 436
SlaI CTCGAG 3 cut(s) 44, 149, 500
SmlI CTYRAG 3 cut(s) 44, 149, 500
SmoI CTYRAG 3 cut(s) 44, 149, 500
Sse9I AATT 3 cut(s) 315, 543, 602
SsiI CCGC 7 cut(s) 110, 220, 222, 678, 844, 904, 906
SstI GAGCTC 4 cut(s) 59, 287, 515, 743
StyD4I CCNGG 1 cut(s) 254
TaiI ACGT 2 cut(s) 78, 306
TasI AATT 3 cut(s) 315, 543, 602
TatI WGTACW 1 cut(s) 892
TauI GCSGC 1 cut(s) 846
TfiI GAWTC 3 cut(s) 334, 419, 772
TseI GCWGC 2 cut(s) 121, 145
TspDTI ATGAA 1 cut(s) 647
TspGWI ACGGA 3 cut(s) 203, 437, 887
Tth111I GACNNNGTC 3 cut(s) 74, 302, 758
VpaK11BI GGWCC 6 cut(s) 115, 162, 208, 343, 390, 436
XapI RAATTY 2 cut(s) 315, 543
XhoI CTCGAG 3 cut(s) 44, 149, 500
XmiI GTMKAC 2 cut(s) 194, 878
XmnI GAANNNNTTC 1 cut(s) 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.