Prupe.2G207900_v2.0.a1

Zinc finger, C3HC4 type (RING finger)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0020382
Physical Location & Seq
Forward (+)
24142930 .. 24149937
7008 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G207900.1

Sequence Viewer

Length: 1722 bp
ATGTCGATTTCTGAGCCTTCAGATAGTGTCGTGGCAATGCTCATCGATGGTGAAGAAGAACAAGAAGAACAACAGCAAACCGATGGTCGAACTCCAATGCCTGAGCGCCAAGAAATCCTGCCTTCTCAGTCTTCGAATAAGAGGGACGAAGGGGAAGAAGGTACAAGGAAGAGGGTTTTCAGTGTGAGCAATTCGGAGGGGTTCTTTTGCCCTATTTGTATGGAGTCGTGGTCGTCCCAAGGCGATCATCAAGTCAGCTGTCTTCCTTGTGGTCATGTATATGGCATGTCTTGCATTAGTAAATGGATTCAGCAGTGTGGTGGAACGTCTGCAAAGTGTCCACAATGCAATACAAAGTACAAGTTGAAGGACATAATAAAGCTTTATGCATCACCAGTAGTTGTGCTTGATGAAAGTCTACAAAAGAAAGTTAAATCACTTGATGCTGAAGTCGTGTCTCTCAAGACTGAAAGAGCTTCTTTACTTGATATACAAGATGATTTGTTCAGTGTACAACAAAATTTAATCAAGGAATTATCCAACCTCAGGGAGTCAAGTCACGGAACAACAAAGTTTTTGAAGCCTTGCTGTGGAGATGATGCACCTTTAGGAGAGACAGGGATGGAGCCCTTTAGTTTTACGTCTGCTAAGGGTAATCAGGGACAGGGAGCACAATGGGATCACTACTTTGCCCATAATTTTGGCAGGCAGGGAATTCTTCACTGGAAATTTCAATTACAGCATGAGTTGGCAGTAGATGGTGCAAGGCTTTTTGATATGGATGCTTCTTATCAAATTTTGGTCCTTGCTCGAAGGATATCAGGAATGGGTGGCACACACATGCTGAAGAAAGTCAACTTGATCAATCCTTTAGAAAATGAAGATATACAGCTTCCTCCAGGTACAAAAGCCATTAAGGACCTACGTATATCCCCATGTGGTAGACTCACCCTTTTAGCTTCATTGGGAAAGAAATTATCAATTCTTAGCATGGGAAGCAACAATTTTGCCATGAATTATGACTTACCGGGCCAAGCATGGTCGTGCTCATGGGATCTCAACAGTCCACATCATATATATGCTGGTTTACAGAATGGTATGCTTTTAATGTTTGATATGCGTCATAGCCAGACTCCTCTGCACTCTTTCGTTGGGCCGACCCCCCGGCCAATTCATACTATACACTCCCTTCGGCAAAACCGTGCTTTCAGTCACAGAACTCAGAAATTGCTTACTGCTTCTTCCAGTGGCCCTTGCGTGTGGAACATTGGTAGTCCTAGTGAAAGGCCCTTTCTGGTCCCTGGATCAGAGGATCAAGGTGCTTGTGTATCAGTAGCTTACAGTCCCTCAACTGATGACATTGTTGCTTCATATCGTCCTAAAACCGAGACATCCAGTGAGACGGGGGGTTCTCAAGTTCTTATCAAGAGGGTAGCTGGTTGCTTTTATCATAAGATTGGATCTGTGCCAGTTCATTTAAGTGACTTTCATCTGACAAAGTCTGCCATGGTAGACATACCGAACTGCTACCCATTGTTTGCGTATGGTGACGAAGTGACCCGTGGACTGAAGCTGCGGGAATTGCCAAGTCTAAAAATGAGCCAGAATTTTGAACCTCATCAACATCCTATCCTTGATGTGAAGTATGCACGTTCTCAGGGAAAAGGTTTACTTGGTTGCGTGAGTGAAGACAAGTTGCAACTTTTTTCAGGAGAGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

574

Amino Acids

63.4

Weight (kDa)

6.47

Isoelectric Point (pI)

51.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020382)

Species Orthologous Gene IDs
malus_domestica MD01G1102300.v1.1
prunus_persica Prupe.2G207900_v2.0.a1 Prupe.2G207900_v2.0.a1 Prupe.2G207900_v2.0.a1 Prupe.2G207900_v2.0.a1
pyrus_communis pycom01g12870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 418, 943, 1512
AciI CCGC 1 cut(s) 1576
AclWI GGATC 5 cut(s) 687, 1062, 1312, 1320, 1468
AcoI YGGCCR 1 cut(s) 1166
AcsI RAATTY 5 cut(s) 520, 714, 728, 795, 1606
AcuI CTGAAG 3 cut(s) 468, 866, 1589
AfaI GTAC 4 cut(s) 163, 359, 513, 904
AfiI CCNNNNNNNGG 2 cut(s) 546, 590
AgsI TTSAA 4 cut(s) 367, 580, 734, 1613
AjnI CCWGG 2 cut(s) 898, 1300
AluBI AGCT 8 cut(s) 258, 382, 476, 892, 959, 1337, 1436, 1573
AluI AGCT 8 cut(s) 258, 382, 476, 892, 959, 1337, 1436, 1573
Alw21I GWGCWC 2 cut(s) 673, 1049
Alw26I GTCTC 4 cut(s) 462, 608, 1382, 1394
AlwI GGATC 5 cut(s) 687, 1062, 1312, 1320, 1468
AoxI GGCC 5 cut(s) 1030, 1154, 1166, 1249, 1286
ApeKI GCWGC 1 cut(s) 1573
ApoI RAATTY 5 cut(s) 520, 714, 728, 795, 1606
ArsI GACNNNNNNTTYG 2 cut(s) 70, 102
AspLEI GCGC 1 cut(s) 108
AspS9I GGNCC 7 cut(s) 802, 919, 1030, 1154, 1250, 1287, 1297
AsuC2I CCSGG 2 cut(s) 1029, 1165
AsuHPI GGTGA 4 cut(s) 62, 384, 940, 1559
AsuII TTCGAA 1 cut(s) 134
AvaII GGWCC 3 cut(s) 802, 919, 1297
AxyI CCTNAGG 1 cut(s) 545
BanII GRGCYC 1 cut(s) 630
BbsI GAAGAC 3 cut(s) 123, 254, 1695
Bbv12I GWGCWC 2 cut(s) 673, 1049
BbvI GCAGC 1 cut(s) 1560
BccI CCATC 4 cut(s) 41, 77, 616, 752
BciT130I CCWGG 2 cut(s) 900, 1302
BclI TGATCA 1 cut(s) 861
BcnI CCSGG 2 cut(s) 1029, 1165
BcoDI GTCTC 4 cut(s) 462, 608, 1382, 1394
BfaI CTAG 1 cut(s) 1278
BfoI RGCGCY 1 cut(s) 109
BisI GCNGC 1 cut(s) 1574
BlsI GCNGC 1 cut(s) 1575
Bme1390I CCNGG 4 cut(s) 900, 1029, 1165, 1302
Bme18I GGWCC 3 cut(s) 802, 919, 1297
BmgT120I GGNCC 7 cut(s) 802, 919, 1030, 1154, 1250, 1287, 1297
BmiI GGNNCC 2 cut(s) 627, 1299
BmrFI CCNGG 4 cut(s) 900, 1029, 1165, 1302
BmsI GCATC 4 cut(s) 398, 433, 589, 772
BpiI GAAGAC 3 cut(s) 123, 254, 1695
BpmI CTGGAG 1 cut(s) 882
Bpu10I CCTNAGC 2 cut(s) 102, 648
Bpu14I TTCGAA 1 cut(s) 134
BpuEI CTTGAG 2 cut(s) 446, 1398
BpuMI CCSGG 2 cut(s) 1029, 1165
Bsa29I ATCGAT 1 cut(s) 45
BsaAI YACGTR 1 cut(s) 926
BsaJI CCNNGG 5 cut(s) 238, 1163, 1300, 1506, 1561
BsaXI ACNNNNNCTCC 2 cut(s) 215, 245
Bsc4I CCNNNNNNNGG 2 cut(s) 546, 590
Bse1I ACTGG 5 cut(s) 395, 728, 1245, 1395, 1469
Bse21I CCTNAGG 1 cut(s) 545
Bse3DI GCAATG 1 cut(s) 42
BseBI CCWGG 2 cut(s) 900, 1302
BseCI ATCGAT 1 cut(s) 45
BseDI CCNNGG 5 cut(s) 238, 1163, 1300, 1506, 1561
BseGI GGATG 4 cut(s) 627, 787, 1391, 1624
BseLI CCNNNNNNNGG 2 cut(s) 546, 590
BseMI GCAATG 1 cut(s) 42
BseMII CTCAG 5 cut(s) 93, 140, 559, 1235, 1670
BseNI ACTGG 5 cut(s) 395, 728, 1245, 1395, 1469
BseRI GAGGAG 1 cut(s) 1125
BseXI GCAGC 1 cut(s) 1560
BsgI GTGCAG 1 cut(s) 1124
BshFI GGCC 5 cut(s) 1032, 1156, 1168, 1251, 1288
BshVI ATCGAT 1 cut(s) 45
BsiHKAI GWGCWC 2 cut(s) 673, 1049
BsiSI CCGG 2 cut(s) 1028, 1165
BslFI GGGAC 5 cut(s) 158, 220, 675, 1283, 1329
BslI CCNNNNNNNGG 2 cut(s) 546, 590
BsmAI GTCTC 4 cut(s) 462, 608, 1382, 1394
BsmBI CGTCTC 1 cut(s) 1394
BsmFI GGGAC 5 cut(s) 158, 220, 675, 1283, 1329
BsnI GGCC 5 cut(s) 1032, 1156, 1168, 1251, 1288
Bsp119I TTCGAA 1 cut(s) 134
Bsp1286I GDGCHC 3 cut(s) 630, 673, 1049
Bsp1407I TGTACA 1 cut(s) 511
Bsp143I GATC 7 cut(s) 244, 679, 861, 1054, 1304, 1312, 1460
Bsp19I CCATGG 1 cut(s) 1506
BspACI CCGC 1 cut(s) 1576
BspANI GGCC 5 cut(s) 1032, 1156, 1168, 1251, 1288
BspCNI CTCAG 6 cut(s) 4, 94, 139, 558, 1234, 1669
BspDI ATCGAT 1 cut(s) 45
BspLI GGNNCC 2 cut(s) 627, 1299
BspPI GGATC 5 cut(s) 687, 1062, 1312, 1320, 1468
BspT104I TTCGAA 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 42
BsrGI TGTACA 1 cut(s) 511
BsrI ACTGG 5 cut(s) 395, 728, 1245, 1395, 1469
BssECI CCNNGG 5 cut(s) 238, 1163, 1300, 1506, 1561
BssMI GATC 7 cut(s) 244, 679, 861, 1054, 1304, 1312, 1460
BssT1I CCWWGG 2 cut(s) 238, 1506
Bst2UI CCWGG 2 cut(s) 900, 1302
Bst4CI ACNGT 3 cut(s) 1064, 1202, 1343
Bst6I CTCTTC 1 cut(s) 164
BstAPI GCANNNNNTGC 1 cut(s) 291
BstAUI TGTACA 1 cut(s) 511
BstBAI YACGTR 1 cut(s) 926
BstBI TTCGAA 1 cut(s) 134
BstC8I GCNNGC 1 cut(s) 707
BstDEI CTNAG 8 cut(s) 12, 102, 126, 545, 648, 986, 1221, 1656
BstDSI CCRYGG 2 cut(s) 1506, 1561
BstF5I GGATG 4 cut(s) 627, 787, 1391, 1624
BstH2I RGCGCY 1 cut(s) 109
BstHHI GCGC 1 cut(s) 108
BstKTI GATC 7 cut(s) 247, 682, 864, 1057, 1307, 1315, 1463
BstMAI GTCTC 4 cut(s) 462, 608, 1382, 1394
BstMBI GATC 7 cut(s) 244, 679, 861, 1054, 1304, 1312, 1460
BstMWI GCNNNNNNNGC 3 cut(s) 291, 996, 1582
BstNI CCWGG 2 cut(s) 900, 1302
BstNSI RCATGY 2 cut(s) 289, 844
BstSCI CCNGG 4 cut(s) 898, 1027, 1163, 1300
BstSNI TACGTA 1 cut(s) 926
BstV1I GCAGC 1 cut(s) 1560
BstV2I GAAGAC 3 cut(s) 123, 254, 1695
BstX2I RGATCY 2 cut(s) 1054, 1460
BstXI CCANNNNNNTGG 1 cut(s) 701
BstYI RGATCY 2 cut(s) 1054, 1460
Bsu15I ATCGAT 1 cut(s) 45
Bsu36I CCTNAGG 1 cut(s) 545
BsuRI GGCC 5 cut(s) 1032, 1156, 1168, 1251, 1288
BsuTUI ATCGAT 1 cut(s) 45
BtgI CCRYGG 2 cut(s) 1506, 1561
BtsCI GGATG 4 cut(s) 627, 787, 1391, 1624
BtsI GCAGTG 1 cut(s) 320
BtsIMutI CAGTG 6 cut(s) 187, 320, 514, 721, 1252, 1402
Cac8I GCNNGC 1 cut(s) 707
CfoI GCGC 1 cut(s) 108
Cfr13I GGNCC 7 cut(s) 802, 919, 1030, 1154, 1250, 1287, 1297
ClaI ATCGAT 1 cut(s) 45
CseI GACGC 1 cut(s) 1109
Csp6I GTAC 4 cut(s) 162, 358, 512, 903
CviQI GTAC 4 cut(s) 162, 358, 512, 903
DdeI CTNAG 8 cut(s) 12, 102, 126, 545, 648, 986, 1221, 1656
DpnI GATC 7 cut(s) 246, 681, 863, 1056, 1306, 1314, 1462
DpnII GATC 7 cut(s) 244, 679, 861, 1054, 1304, 1312, 1460
EaeI YGGCCR 1 cut(s) 1166
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
Eco105I TACGTA 1 cut(s) 926
Eco130I CCWWGG 2 cut(s) 238, 1506
Eco24I GRGCYC 1 cut(s) 630
Eco32I GATATC 1 cut(s) 819
Eco47I GGWCC 3 cut(s) 802, 919, 1297
Eco57I CTGAAG 3 cut(s) 468, 866, 1589
Eco81I CCTNAGG 1 cut(s) 545
EcoO109I RGGNCCY 2 cut(s) 919, 1287
EcoRI GAATTC 1 cut(s) 714
EcoRII CCWGG 2 cut(s) 898, 1300
EcoRV GATATC 1 cut(s) 819
EcoT14I CCWWGG 2 cut(s) 238, 1506
EcoT22I ATGCAT 1 cut(s) 391
EcoT38I GRGCYC 1 cut(s) 630
ErhI CCWWGG 2 cut(s) 238, 1506
Esp3I CGTCTC 1 cut(s) 1394
FalI AAGNNNNNCTT 4 cut(s) 463, 495, 1656, 1688
FaqI GGGAC 5 cut(s) 158, 220, 675, 1283, 1329
FauI CCCGC 1 cut(s) 1569
FbaI TGATCA 1 cut(s) 861
FblI GTMKAC 3 cut(s) 418, 943, 1512
Fnu4HI GCNGC 1 cut(s) 1574
FokI GGATG 4 cut(s) 634, 794, 1378, 1611
FriOI GRGCYC 1 cut(s) 630
Fsp4HI GCNGC 1 cut(s) 1574
FspBI CTAG 1 cut(s) 1278
GlaI GCGC 1 cut(s) 107
GluI GCNGC 1 cut(s) 1574
GsuI CTGGAG 1 cut(s) 882
HaeII RGCGCY 1 cut(s) 109
HaeIII GGCC 5 cut(s) 1032, 1156, 1168, 1251, 1288
HapII CCGG 2 cut(s) 1028, 1165
HgaI GACGC 1 cut(s) 1109
HhaI GCGC 1 cut(s) 108
Hin6I GCGC 1 cut(s) 106
HinP1I GCGC 1 cut(s) 106
HincII GTYRAC 1 cut(s) 856
HindII GTYRAC 1 cut(s) 856
HindIII AAGCTT 1 cut(s) 380
HinfI GANTC 5 cut(s) 224, 307, 551, 945, 1132
HpaII CCGG 2 cut(s) 1028, 1165
HphI GGTGA 4 cut(s) 62, 384, 940, 1559
Hpy188I TCNGA 7 cut(s) 13, 22, 196, 1224, 1309, 1494, 1721
Hpy188III TCNNGA 4 cut(s) 463, 822, 1426, 1710
HpyAV CCTTC 7 cut(s) 27, 132, 143, 152, 361, 807, 1199
HpyCH4III ACNGT 3 cut(s) 1064, 1202, 1343
HpyCH4IV ACGT 4 cut(s) 326, 641, 925, 1651
HpyCH4V TGCA 9 cut(s) 294, 332, 348, 389, 602, 764, 1141, 1649, 1699
HpyF10VI GCNNNNNNNGC 3 cut(s) 291, 996, 1582
HpyF3I CTNAG 8 cut(s) 12, 102, 126, 545, 648, 986, 1221, 1656
HpySE526I ACGT 4 cut(s) 326, 641, 925, 1651
HspAI GCGC 1 cut(s) 106
Ksp22I TGATCA 1 cut(s) 861
Kzo9I GATC 7 cut(s) 244, 679, 861, 1054, 1304, 1312, 1460
LmnI GCTCC 2 cut(s) 625, 668
Lsp1109I GCAGC 1 cut(s) 1560
LweI GCATC 4 cut(s) 398, 433, 589, 772
MaeI CTAG 1 cut(s) 1278
MaeII ACGT 4 cut(s) 326, 641, 925, 1651
MaeIII GTNAC 5 cut(s) 557, 1211, 1481, 1547, 1555
MalI GATC 7 cut(s) 246, 681, 863, 1056, 1306, 1314, 1462
MboI GATC 7 cut(s) 244, 679, 861, 1054, 1304, 1312, 1460
MflI RGATCY 2 cut(s) 1054, 1460
MhlI GDGCHC 3 cut(s) 630, 673, 1049
MlyI GAGTC 4 cut(s) 233, 560, 939, 1126
MmeI TCCRAC 1 cut(s) 564
Mph1103I ATGCAT 1 cut(s) 391
MseI TTAA 5 cut(s) 432, 524, 915, 1106, 1478
MslI CAYNNNNRTG 5 cut(s) 279, 839, 1042, 1077, 1479
MspA1I CMGCKG 1 cut(s) 258
MspI CCGG 2 cut(s) 1028, 1165
MspR9I CCNGG 4 cut(s) 900, 1029, 1165, 1302
MvaI CCWGG 2 cut(s) 900, 1302
MwoI GCNNNNNNNGC 3 cut(s) 291, 996, 1582
NciI CCSGG 2 cut(s) 1029, 1165
NcoI CCATGG 1 cut(s) 1506
NdeII GATC 7 cut(s) 244, 679, 861, 1054, 1304, 1312, 1460
NlaIV GGNNCC 2 cut(s) 627, 1299
NmuCI GTSAC 5 cut(s) 557, 1211, 1481, 1547, 1555
NsiI ATGCAT 1 cut(s) 391
NspI RCATGY 2 cut(s) 289, 844
NspV TTCGAA 1 cut(s) 134
PcsI WCGNNNNNNNCGW 1 cut(s) 1198
PfeI GAWTC 1 cut(s) 307
PflFI GACNNNGTC 1 cut(s) 1498
PkrI GCNGC 1 cut(s) 1575
PleI GAGTC 4 cut(s) 232, 559, 939, 1126
PpsI GAGTC 4 cut(s) 232, 559, 939, 1126
Ppu21I YACGTR 1 cut(s) 926
PpuMI RGGWCCY 1 cut(s) 919
Psp5II RGGWCCY 1 cut(s) 919
Psp6I CCWGG 2 cut(s) 898, 1300
PspGI CCWGG 2 cut(s) 898, 1300
PspN4I GGNNCC 2 cut(s) 627, 1299
PspPI GGNCC 7 cut(s) 802, 919, 1030, 1154, 1250, 1287, 1297
PspPPI RGGWCCY 1 cut(s) 919
PsuI RGATCY 2 cut(s) 1054, 1460
PsyI GACNNNGTC 1 cut(s) 1498
PvuII CAGCTG 1 cut(s) 258
RsaI GTAC 4 cut(s) 163, 359, 513, 904
RsaNI GTAC 4 cut(s) 162, 358, 512, 903
RseI CAYNNNNRTG 5 cut(s) 279, 839, 1042, 1077, 1479
SaqAI TTAA 5 cut(s) 432, 524, 915, 1106, 1478
SatI GCNGC 1 cut(s) 1574
Sau3AI GATC 7 cut(s) 244, 679, 861, 1054, 1304, 1312, 1460
Sau96I GGNCC 7 cut(s) 802, 919, 1030, 1154, 1250, 1287, 1297
SchI GAGTC 4 cut(s) 233, 560, 939, 1126
ScrFI CCNGG 4 cut(s) 900, 1029, 1165, 1302
SduI GDGCHC 3 cut(s) 630, 673, 1049
SfaNI GCATC 4 cut(s) 398, 433, 589, 772
SfuI TTCGAA 1 cut(s) 134
SinI GGWCC 3 cut(s) 802, 919, 1297
SmiMI CAYNNNNRTG 5 cut(s) 279, 839, 1042, 1077, 1479
SmlI CTYRAG 2 cut(s) 461, 1413
SmoI CTYRAG 2 cut(s) 461, 1413
SnaBI TACGTA 1 cut(s) 926
SsiI CCGC 1 cut(s) 1576
SspMI CTAG 1 cut(s) 1278
StyD4I CCNGG 4 cut(s) 898, 1027, 1163, 1300
StyI CCWWGG 2 cut(s) 238, 1506
TaaI ACNGT 3 cut(s) 1064, 1202, 1343
TaiI ACGT 4 cut(s) 329, 644, 928, 1654
TaqI TCGA 5 cut(s) 5, 45, 88, 134, 811
TatI WGTACW 2 cut(s) 357, 511
TfiI GAWTC 1 cut(s) 307
Tru1I TTAA 5 cut(s) 432, 524, 915, 1106, 1478
Tru9I TTAA 5 cut(s) 432, 524, 915, 1106, 1478
TscAI CASTG 6 cut(s) 187, 320, 514, 728, 1252, 1402
TseFI GTSAC 5 cut(s) 557, 1211, 1481, 1547, 1555
TseI GCWGC 1 cut(s) 1573
Tsp45I GTSAC 5 cut(s) 557, 1211, 1481, 1547, 1555
TspDTI ATGAA 8 cut(s) 426, 894, 951, 1028, 1163, 1359, 1463, 1478
TspGWI ACGGA 1 cut(s) 576
TspRI CASTG 6 cut(s) 187, 320, 514, 728, 1252, 1402
Tth111I GACNNNGTC 1 cut(s) 1498
VpaK11BI GGWCC 3 cut(s) 802, 919, 1297
XapI RAATTY 5 cut(s) 520, 714, 728, 795, 1606
XceI RCATGY 2 cut(s) 289, 844
XmiI GTMKAC 3 cut(s) 418, 943, 1512
XspI CTAG 1 cut(s) 1278
Zsp2I ATGCAT 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.