Prupe.2G211500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0019644
Physical Location & Seq
Reverse (-)
24385400 .. 24386450
1051 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G211500.1

Sequence Viewer

Length: 255 bp
ATGCATAAAACACCAAAAAGGATCAATAATATGGCCAATAAAACTGCCATTCTCATTTGTGTGCTAGTTGTTGTGATTGGATGTAGCAGCATGCAGGGCAGTGAAGCAATCTCAGCATGCGCCAAGCCATGCATGCCAGTCTGCATGAAGGAGGAAGGGGCAAGCATTCCCATCTGTGAGATTGCCTGTGAGAACTATTGCAAACAGATCTCCGGCAACCGGAATTCTGAGTGGAATCGATATCGCAACCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.27

Weight (kDa)

8.69

Isoelectric Point (pI)

65.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019644)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11572
prunus_persica Prupe.2G211500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0362981
rosa_roxburghii Rroxscaffold_4G00293580
rosa_rugosa Rorug01G0303300
rosa_samantha Rh1AG312200
rosa_wichuraiana Rw1G027670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 29
AcoI YGGCCR 1 cut(s) 33
AcsI RAATTY 1 cut(s) 223
AfiI CCNNNNNNNGG 1 cut(s) 219
AlwI GGATC 1 cut(s) 29
AoxI GGCC 1 cut(s) 33
ApeKI GCWGC 1 cut(s) 87
ApoI RAATTY 1 cut(s) 223
AspLEI GCGC 1 cut(s) 122
BalI TGGCCA 1 cut(s) 35
BbvI GCAGC 1 cut(s) 99
BccI CCATC 1 cut(s) 179
BfaI CTAG 1 cut(s) 65
BglII AGATCT 1 cut(s) 207
BisI GCNGC 1 cut(s) 88
BlsI GCNGC 1 cut(s) 89
Bsa29I ATCGAT 1 cut(s) 238
BsaWI WCCGGW 1 cut(s) 219
Bsc4I CCNNNNNNNGG 1 cut(s) 219
Bse1I ACTGG 1 cut(s) 137
BseCI ATCGAT 1 cut(s) 238
BseGI GGATG 1 cut(s) 86
BseLI CCNNNNNNNGG 1 cut(s) 219
BseMII CTCAG 2 cut(s) 126, 219
BseNI ACTGG 1 cut(s) 137
BseXI GCAGC 1 cut(s) 99
BshFI GGCC 1 cut(s) 35
BshVI ATCGAT 1 cut(s) 238
BsiSI CCGG 2 cut(s) 213, 220
BslI CCNNNNNNNGG 1 cut(s) 219
BsmI GAATGC 1 cut(s) 165
BsnI GGCC 1 cut(s) 35
Bsp143I GATC 2 cut(s) 21, 207
BspANI GGCC 1 cut(s) 35
BspCNI CTCAG 2 cut(s) 125, 220
BspDI ATCGAT 1 cut(s) 238
BspPI GGATC 1 cut(s) 29
BsrI ACTGG 1 cut(s) 137
BssMI GATC 2 cut(s) 21, 207
BstC8I GCNNGC 4 cut(s) 92, 118, 134, 163
BstDEI CTNAG 2 cut(s) 112, 228
BstF5I GGATG 1 cut(s) 86
BstHHI GCGC 1 cut(s) 122
BstKTI GATC 2 cut(s) 24, 210
BstMBI GATC 2 cut(s) 21, 207
BstMWI GCNNNNNNNGC 3 cut(s) 96, 113, 133
BstNSI RCATGY 3 cut(s) 94, 120, 136
BstV1I GCAGC 1 cut(s) 99
BstX2I RGATCY 1 cut(s) 207
BstYI RGATCY 1 cut(s) 207
Bsu15I ATCGAT 1 cut(s) 238
BsuRI GGCC 1 cut(s) 35
BsuTUI ATCGAT 1 cut(s) 238
BtsCI GGATG 1 cut(s) 86
BtsI GCAGTG 1 cut(s) 106
BtsIMutI CAGTG 1 cut(s) 106
Cac8I GCNNGC 4 cut(s) 92, 118, 134, 163
CfoI GCGC 1 cut(s) 122
ClaI ATCGAT 1 cut(s) 238
CviAII CATG 5 cut(s) 91, 117, 129, 133, 145
CviJI RGCY 2 cut(s) 35, 127
CviKI_1 RGCY 2 cut(s) 35, 127
DdeI CTNAG 2 cut(s) 112, 228
DpnI GATC 2 cut(s) 23, 209
DpnII GATC 2 cut(s) 21, 207
EaeI YGGCCR 1 cut(s) 33
Eco32I GATATC 1 cut(s) 242
EcoRI GAATTC 1 cut(s) 223
EcoRV GATATC 1 cut(s) 242
EcoT22I ATGCAT 2 cut(s) 6, 134
FaeI CATG 5 cut(s) 94, 120, 132, 136, 148
FaiI YATR 7 cut(s) 6, 32, 92, 118, 130, 134, 146
FatI CATG 5 cut(s) 90, 116, 128, 132, 144
Fnu4HI GCNGC 1 cut(s) 88
FokI GGATG 1 cut(s) 93
Fsp4HI GCNGC 1 cut(s) 88
FspBI CTAG 1 cut(s) 65
GlaI GCGC 1 cut(s) 121
GluI GCNGC 1 cut(s) 88
HaeIII GGCC 1 cut(s) 35
HapII CCGG 2 cut(s) 213, 220
HhaI GCGC 1 cut(s) 122
Hin1II CATG 5 cut(s) 94, 120, 132, 136, 148
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HinfI GANTC 1 cut(s) 235
HpaII CCGG 2 cut(s) 213, 220
Hpy188I TCNGA 1 cut(s) 229
HpyAV CCTTC 2 cut(s) 142, 149
HpyCH4V TGCA 5 cut(s) 4, 94, 132, 144, 201
HpyF10VI GCNNNNNNNGC 3 cut(s) 96, 113, 133
HpyF3I CTNAG 2 cut(s) 112, 228
Hsp92II CATG 5 cut(s) 94, 120, 132, 136, 148
HspAI GCGC 1 cut(s) 120
Kzo9I GATC 2 cut(s) 21, 207
LpnPI CCDG 5 cut(s) 80, 150, 199, 226, 233
Lsp1109I GCAGC 1 cut(s) 99
MaeI CTAG 1 cut(s) 65
MalI GATC 2 cut(s) 23, 209
MboI GATC 2 cut(s) 21, 207
MflI RGATCY 1 cut(s) 207
MlsI TGGCCA 1 cut(s) 35
MluCI AATT 1 cut(s) 223
MluNI TGGCCA 1 cut(s) 35
MnlI CCTC 1 cut(s) 145
Mox20I TGGCCA 1 cut(s) 35
Mph1103I ATGCAT 2 cut(s) 6, 134
MscI TGGCCA 1 cut(s) 35
MslI CAYNNNNRTG 1 cut(s) 59
Msp20I TGGCCA 1 cut(s) 35
MspI CCGG 2 cut(s) 213, 220
Mva1269I GAATGC 1 cut(s) 165
MwoI GCNNNNNNNGC 3 cut(s) 96, 113, 133
NdeII GATC 2 cut(s) 21, 207
NlaIII CATG 5 cut(s) 94, 120, 132, 136, 148
NsiI ATGCAT 2 cut(s) 6, 134
NspI RCATGY 3 cut(s) 94, 120, 136
PaeI GCATGC 3 cut(s) 94, 120, 136
PctI GAATGC 1 cut(s) 165
PfeI GAWTC 1 cut(s) 235
PkrI GCNGC 1 cut(s) 89
PsuI RGATCY 1 cut(s) 207
RseI CAYNNNNRTG 1 cut(s) 59
SatI GCNGC 1 cut(s) 88
Sau3AI GATC 2 cut(s) 21, 207
SetI ASST 1 cut(s) 252
SmiMI CAYNNNNRTG 1 cut(s) 59
SphI GCATGC 3 cut(s) 94, 120, 136
Sse9I AATT 1 cut(s) 223
SspMI CTAG 1 cut(s) 65
TaqI TCGA 1 cut(s) 238
TasI AATT 1 cut(s) 223
TfiI GAWTC 1 cut(s) 235
TscAI CASTG 1 cut(s) 106
TseI GCWGC 1 cut(s) 87
TspDTI ATGAA 1 cut(s) 161
TspRI CASTG 1 cut(s) 106
XapI RAATTY 1 cut(s) 223
XceI RCATGY 3 cut(s) 94, 120, 136
XspI CTAG 1 cut(s) 65
Zsp2I ATGCAT 2 cut(s) 6, 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.