Rorug01G0303300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0019644
Physical Location & Seq
Reverse (-)
41923292 .. 41924178
887 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0303300.1

Sequence Viewer

Length: 258 bp
ATGGCAGCTTGCTTTGCTTTTTCCAAGGCCATTTTCCGACTTCTGGCAGTGCTGGCAGTCCTCTTCTTGGCTTCTGCCTCTGCCTCAAGGGCTCCTGCTGCTTCACCGCTAGCTGCTCCTGCTCCTGCTCCTGTTCCTGTTCCCACTAGTGATGGGACTTCAATAGATCAGGGGATTGCGTATGTGCTGATGCTCGTGGCTTTGGTGCTCACATATCTCATTCATCCTTTGGATGCATCATCCTACAACTTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

8.75

Weight (kDa)

6.5

Isoelectric Point (pI)

48.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AGP PF06376 40 - 75 9.6e-19 Arabinogalactan peptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019644)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11572
prunus_persica Prupe.2G211500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0362981
rosa_roxburghii Rroxscaffold_4G00293580
rosa_rugosa Rorug01G0303300
rosa_samantha Rh1AG312200
rosa_wichuraiana Rw1G027670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 107
AfiI CCNNNNNNNGG 2 cut(s) 43, 67
AgsI TTSAA 1 cut(s) 162
AhlI ACTAGT 1 cut(s) 146
AjuI GAANNNNNNNTTGG 2 cut(s) 17, 49
AluBI AGCT 2 cut(s) 8, 113
AluI AGCT 2 cut(s) 8, 113
Alw21I GWGCWC 1 cut(s) 210
AoxI GGCC 1 cut(s) 27
ApeKI GCWGC 3 cut(s) 5, 98, 113
AsuHPI GGTGA 1 cut(s) 96
AsuNHI GCTAGC 1 cut(s) 109
BanII GRGCYC 1 cut(s) 94
BauI CACGAG 1 cut(s) 194
Bbv12I GWGCWC 1 cut(s) 210
BbvI GCAGC 3 cut(s) 17, 85, 100
BccI CCATC 1 cut(s) 146
BcuI ACTAGT 1 cut(s) 146
BfaI CTAG 2 cut(s) 110, 147
BglI GCCNNNNNGGC 1 cut(s) 89
BisI GCNGC 3 cut(s) 6, 99, 114
BlsI GCNGC 3 cut(s) 7, 100, 115
BmiI GGNNCC 1 cut(s) 93
BmsI GCATC 3 cut(s) 180, 223, 245
BmtI GCTAGC 1 cut(s) 113
BpuEI CTTGAG 1 cut(s) 70
BsaJI CCNNGG 1 cut(s) 24
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 67
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 3 cut(s) 223, 238, 239
BseLI CCNNNNNNNGG 2 cut(s) 43, 67
BseXI GCAGC 3 cut(s) 17, 85, 100
BshFI GGCC 1 cut(s) 29
BsiHKAI GWGCWC 1 cut(s) 210
BslFI GGGAC 1 cut(s) 169
BslI CCNNNNNNNGG 2 cut(s) 43, 67
BsmFI GGGAC 1 cut(s) 169
BsnI GGCC 1 cut(s) 29
Bsp1286I GDGCHC 2 cut(s) 94, 210
Bsp143I GATC 1 cut(s) 166
BspACI CCGC 1 cut(s) 107
BspANI GGCC 1 cut(s) 29
BspLI GGNNCC 1 cut(s) 93
BspOI GCTAGC 1 cut(s) 113
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 1 cut(s) 166
BssSI CACGAG 1 cut(s) 194
BssT1I CCWWGG 1 cut(s) 24
Bst2BI CACGAG 1 cut(s) 194
Bst6I CTCTTC 1 cut(s) 68
BstC8I GCNNGC 3 cut(s) 10, 54, 111
BstF5I GGATG 3 cut(s) 223, 238, 239
BstKTI GATC 1 cut(s) 169
BstMBI GATC 1 cut(s) 166
BstMWI GCNNNNNNNGC 5 cut(s) 14, 53, 89, 98, 119
BstV1I GCAGC 3 cut(s) 17, 85, 100
BsuRI GGCC 1 cut(s) 29
BtsCI GGATG 3 cut(s) 223, 238, 239
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 1 cut(s) 54
Cac8I GCNNGC 3 cut(s) 10, 54, 111
CviJI RGCY 6 cut(s) 8, 29, 71, 92, 113, 200
CviKI_1 RGCY 6 cut(s) 8, 29, 71, 92, 113, 200
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
Eco130I CCWWGG 1 cut(s) 24
Eco24I GRGCYC 1 cut(s) 94
EcoT14I CCWWGG 1 cut(s) 24
EcoT22I ATGCAT 1 cut(s) 238
EcoT38I GRGCYC 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 24
FaiI YATR 2 cut(s) 183, 214
FaqI GGGAC 1 cut(s) 169
Fnu4HI GCNGC 3 cut(s) 6, 99, 114
FokI GGATG 3 cut(s) 210, 226, 245
FriOI GRGCYC 1 cut(s) 94
Fsp4HI GCNGC 3 cut(s) 6, 99, 114
FspBI CTAG 2 cut(s) 110, 147
GluI GCNGC 3 cut(s) 6, 99, 114
HaeIII GGCC 1 cut(s) 29
HphI GGTGA 1 cut(s) 96
Hpy188I TCNGA 1 cut(s) 38
HpyCH4V TGCA 1 cut(s) 236
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 53, 89, 98, 119
Kzo9I GATC 1 cut(s) 166
LmnI GCTCC 4 cut(s) 97, 121, 127, 133
LpnPI CCDG 8 cut(s) 29, 38, 108, 132, 138, 144, 150, 155
Lsp1109I GCAGC 3 cut(s) 17, 85, 100
LweI GCATC 3 cut(s) 180, 223, 245
MaeI CTAG 2 cut(s) 110, 147
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 1 cut(s) 55
MhlI GDGCHC 2 cut(s) 94, 210
MmeI TCCRAC 1 cut(s) 61
MnlI CCTC 3 cut(s) 71, 88, 94
Mph1103I ATGCAT 1 cut(s) 238
MwoI GCNNNNNNNGC 5 cut(s) 14, 53, 89, 98, 119
NdeII GATC 1 cut(s) 166
NheI GCTAGC 1 cut(s) 109
NlaIV GGNNCC 1 cut(s) 93
NsiI ATGCAT 1 cut(s) 238
PkrI GCNGC 3 cut(s) 7, 100, 115
PspN4I GGNNCC 1 cut(s) 93
SatI GCNGC 3 cut(s) 6, 99, 114
Sau3AI GATC 1 cut(s) 166
SduI GDGCHC 2 cut(s) 94, 210
SetI ASST 2 cut(s) 10, 115
SfaNI GCATC 3 cut(s) 180, 223, 245
SmlI CTYRAG 1 cut(s) 85
SmoI CTYRAG 1 cut(s) 85
SpeI ACTAGT 1 cut(s) 146
SsiI CCGC 1 cut(s) 107
SspMI CTAG 2 cut(s) 110, 147
StyI CCWWGG 1 cut(s) 24
TscAI CASTG 1 cut(s) 54
TseI GCWGC 3 cut(s) 5, 98, 113
TspDTI ATGAA 1 cut(s) 212
TspRI CASTG 1 cut(s) 54
XspI CTAG 2 cut(s) 110, 147
Zsp2I ATGCAT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.