Prupe.2G230900_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
25523081 .. 25523645
565 bp
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UTR
Exon/CDS
Intron
Prupe.2G230900.1

Sequence Viewer

Length: 168 bp
ATGGAAGCCAGGAAGCTCCTCAACGACAAGAAGTTCTGGTTCGCATCTGTCCTCATTGCTTGGGCTGCTGCTCTCCAGGGACACATGATGTGGGTGAAAAGACAAGACTCGTTCAAGCAAAAGTTTGGGAATCTCAGCGAAGCCAACACCAATGATGCCGATCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

56

Amino Acids

6.39

Weight (kDa)

9.3

Isoelectric Point (pI)

21.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39500
malus_domestica MD01G1123400.v1.1
prunus_persica Prupe.2G230900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0366131
rosa_roxburghii Rroxscaffold_4G00290470
rosa_samantha Rh1AG335800 Rh1BG297200 Rh1CG313200 Rh1DG329000
rosa_wichuraiana Rw1G029790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 115
AjnI CCWGG 2 cut(s) 8, 75
AluBI AGCT 1 cut(s) 16
AluI AGCT 1 cut(s) 16
ApeKI GCWGC 2 cut(s) 65, 68
AsuHPI GGTGA 1 cut(s) 106
BbvI GCAGC 2 cut(s) 52, 55
BciT130I CCWGG 2 cut(s) 10, 77
BisI GCNGC 2 cut(s) 66, 69
BlsI GCNGC 2 cut(s) 67, 70
Bme1390I CCNGG 2 cut(s) 10, 77
BmrFI CCNGG 2 cut(s) 10, 77
BmsI GCATC 2 cut(s) 53, 145
BpmI CTGGAG 1 cut(s) 59
BsaBI GATNNNNATC 1 cut(s) 159
BsaJI CCNNGG 1 cut(s) 76
Bse3DI GCAATG 1 cut(s) 54
Bse8I GATNNNNATC 1 cut(s) 159
BseBI CCWGG 2 cut(s) 10, 77
BseDI CCNNGG 1 cut(s) 76
BseJI GATNNNNATC 1 cut(s) 159
BseMI GCAATG 1 cut(s) 54
BseMII CTCAG 1 cut(s) 148
BseRI GAGGAG 1 cut(s) 8
BseXI GCAGC 2 cut(s) 52, 55
BslFI GGGAC 1 cut(s) 93
BsmFI GGGAC 1 cut(s) 93
Bsp143I GATC 1 cut(s) 160
BspCNI CTCAG 1 cut(s) 147
BsrDI GCAATG 1 cut(s) 54
BssECI CCNNGG 1 cut(s) 76
BssMI GATC 1 cut(s) 160
Bst2UI CCWGG 2 cut(s) 10, 77
BstDEI CTNAG 1 cut(s) 134
BstKTI GATC 1 cut(s) 163
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstNI CCWGG 2 cut(s) 10, 77
BstSCI CCNGG 2 cut(s) 8, 75
BstV1I GCAGC 2 cut(s) 52, 55
CviAII CATG 1 cut(s) 85
CviJI RGCY 4 cut(s) 8, 16, 65, 143
CviKI_1 RGCY 4 cut(s) 8, 16, 65, 143
DdeI CTNAG 1 cut(s) 134
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
EcoRII CCWGG 2 cut(s) 8, 75
FaeI CATG 1 cut(s) 88
FaiI YATR 1 cut(s) 86
FaqI GGGAC 1 cut(s) 93
FatI CATG 1 cut(s) 84
Fnu4HI GCNGC 2 cut(s) 66, 69
Fsp4HI GCNGC 2 cut(s) 66, 69
GluI GCNGC 2 cut(s) 66, 69
GsuI CTGGAG 1 cut(s) 59
Hin1II CATG 1 cut(s) 88
HinfI GANTC 2 cut(s) 107, 130
HphI GGTGA 1 cut(s) 106
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 1 cut(s) 134
Hsp92II CATG 1 cut(s) 88
Kzo9I GATC 1 cut(s) 160
LmnI GCTCC 1 cut(s) 21
LpnPI CCDG 4 cut(s) 22, 22, 62, 89
Lsp1109I GCAGC 2 cut(s) 52, 55
LweI GCATC 2 cut(s) 53, 145
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MlyI GAGTC 1 cut(s) 101
MnlI CCTC 2 cut(s) 29, 62
MspR9I CCNGG 2 cut(s) 10, 77
MvaI CCWGG 2 cut(s) 10, 77
MwoI GCNNNNNNNGC 1 cut(s) 65
NdeII GATC 1 cut(s) 160
NlaIII CATG 1 cut(s) 88
PfeI GAWTC 1 cut(s) 130
PkrI GCNGC 2 cut(s) 67, 70
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
Psp6I CCWGG 2 cut(s) 8, 75
PspGI CCWGG 2 cut(s) 8, 75
SatI GCNGC 2 cut(s) 66, 69
Sau3AI GATC 1 cut(s) 160
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 2 cut(s) 10, 77
SetI ASST 1 cut(s) 18
SfaNI GCATC 2 cut(s) 53, 145
StyD4I CCNGG 2 cut(s) 8, 75
TfiI GAWTC 1 cut(s) 130
TseI GCWGC 2 cut(s) 65, 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.