Prupe.2G255300_v2.0.a1

Protein MID1-COMPLEMENTING ACTIVITY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0024479
Physical Location & Seq
Forward (+)
26781187 .. 26783274
2088 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G255300.1

Sequence Viewer

Length: 1269 bp
ATGTCACTTGCATTTGTCCACATAGTACTTCCTTGGTCCTTTGTATCAATATCAGTTTTCAAAGCTTCCAGAATGGCAAGCTTGGCTTCTGCTCAGGCATCATCAAGGCTAGACGCTCTGAGTCTCACAAACACGATCGTATCCTTGGCTCGAAACGCCAGGACACACCGCCACAACTGTGGGCAGCTCGCTGAGCACGTAGGGATGATAGGAAACTTGCTCGAGAAGATTAAATCAACGGACCTGATGAAGCTCCCAGCTACAAAGGAGCCGTTGGTTGGTCTTGAAGAGGCTCTTGAGAAAGCACTTCAATTAGTGGAGAGTTGCAGAGACAAGAGCTGTCTCTACATGCTTGCCATGGGGTGGAGTGTAGTGTATCAATTCCGCCAAGTCCAAGCTGAGATTAACCGCCACCTCAGTCTCCTAGTCCTCCCCATGATTTCTCTGCTTCATGAGTTTCGCCTGCAGAATTTGAAGGAAGGCCTGCAGGCCATTGAAGAGGATCAAAGAATGTATACACTTGAGGAAGAGGACATGGAGGCCCAGAATGTGGTATTGAAACCTGATAGAACAAGGACAGATGCAGAGATATTAGAGAAGTCATTGTCTCCAAAATATCCTAACTTGACTTTCAGTGAGGCACTTCAGGAGGAGAAGGAGAAGCTGAATATTGAATTGCAGCGGTCAAGAACGATTAACGACGGCCCCGATCAATGCAGAGTGATTGAACATCTTATTGATGTAGCAGAAAATGTGGTCAGTGGTGTGCTGCCTGGGAAGAAAGTTGAGAAGCTTCTTGTCAATGAACCAAGTTATGTGGTATCAGGGTACATAACCAATGCCAAATCCATCTATGGAGACCATGGCTTACGGCCAGAGAATGAAGGGCGGTTCGGGTGGCAGGCTGATCTTTTCAGTTGTTGCAGCGAGCCTTGTCTAAGCCTGAAGAGCTGCGTCTACCCTTGTGGAACATTTTCATGGATAGCCAATGTGGTGTCAGAAGGAAAAATATCTCGTGAACAAGCAACCAATAACCTAATAGCATGCTCTGTTTTTGGTGCCTGTTGCTGTTACACTTGCTTTGTGAGAAGGAAATTGCGGCAACTTTTTAACATAGAAGGAAGTTCTTGTGATGACTTCTTCACTCACCTCATGTGCTGCTGCTGTGCCATGGTTCAAGAACGACGAGAACTTGAACTCAGAAACTTTGAAGGTTGCAGAGGAACAAATATGATCGTCCCACCATCATTACAATGCATGAATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

423

Amino Acids

47.45

Weight (kDa)

5.93

Isoelectric Point (pI)

50.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024479)

Species Orthologous Gene IDs
malus_domestica MD07G1226300.v1.1
prunus_persica Prupe.2G255300_v2.0.a1
pyrus_communis pycom07g20460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1058
AccB7I CCANNNNNTGG 2 cut(s) 363, 550
AccI GTMKAC 2 cut(s) 515, 957
AciI CCGC 6 cut(s) 169, 385, 409, 682, 889, 1099
AclWI GGATC 1 cut(s) 510
AcoI YGGCCR 1 cut(s) 872
AcsI RAATTY 1 cut(s) 469
AcuI CTGAAG 2 cut(s) 629, 965
AfaI GTAC 2 cut(s) 27, 830
AfiI CCNNNNNNNGG 3 cut(s) 278, 363, 550
AjnI CCWGG 2 cut(s) 158, 772
AleI CACNNNNGTG 1 cut(s) 177
Alw21I GWGCWC 1 cut(s) 198
Alw26I GTCTC 6 cut(s) 128, 324, 347, 425, 612, 852
AlwI GGATC 1 cut(s) 510
Ama87I CYCGRG 1 cut(s) 221
AoxI GGCC 5 cut(s) 481, 489, 540, 703, 872
ApeKI GCWGC 7 cut(s) 184, 679, 769, 924, 951, 1158, 1161
ApoI RAATTY 1 cut(s) 469
Asp700I GAANNNNTTC 1 cut(s) 973
AspS9I GGNCC 4 cut(s) 36, 241, 541, 704
AsuHPI GGTGA 1 cut(s) 1139
AvaI CYCGRG 1 cut(s) 221
AvaII GGWCC 2 cut(s) 36, 241
BaeI ACNNNNGTAYC 2 cut(s) 123, 156
BanI GGYRCC 1 cut(s) 1058
BauI CACGAG 1 cut(s) 1014
Bbv12I GWGCWC 1 cut(s) 198
BbvI GCAGC 7 cut(s) 196, 691, 756, 936, 938, 1145, 1148
BccI CCATC 2 cut(s) 857, 1252
BceAI ACGGC 3 cut(s) 256, 718, 887
BciT130I CCWGG 2 cut(s) 160, 774
BciVI GTATCC 1 cut(s) 151
BcoDI GTCTC 6 cut(s) 128, 324, 347, 425, 612, 852
BfaI CTAG 2 cut(s) 110, 425
BfmI CTRYAG 2 cut(s) 464, 485
BfuI GTATCC 1 cut(s) 151
BisI GCNGC 8 cut(s) 185, 680, 770, 925, 952, 1100, 1159, 1162
BlpI GCTNAGC 1 cut(s) 192
BlsI GCNGC 8 cut(s) 186, 681, 771, 926, 953, 1101, 1160, 1163
BmcAI AGTACT 1 cut(s) 27
Bme1390I CCNGG 2 cut(s) 160, 774
Bme18I GGWCC 2 cut(s) 36, 241
BmeT110I CYCGRG 1 cut(s) 221
BmgT120I GGNCC 4 cut(s) 36, 241, 541, 704
BmiI GGNNCC 3 cut(s) 270, 706, 1060
BmrFI CCNGG 2 cut(s) 160, 774
BmsI GCATC 2 cut(s) 107, 571
Bpu10I CCTNAGC 1 cut(s) 93
Bpu1102I GCTNAGC 1 cut(s) 192
BpuEI CTTGAG 2 cut(s) 317, 542
BsaAI YACGTR 1 cut(s) 199
BsaI GGTCTC 1 cut(s) 852
BsaJI CCNNGG 6 cut(s) 32, 144, 357, 773, 862, 1170
Bsc4I CCNNNNNNNGG 3 cut(s) 278, 363, 550
BseBI CCWGG 2 cut(s) 160, 774
BseDI CCNNGG 6 cut(s) 32, 144, 357, 773, 862, 1170
BseGI GGATG 1 cut(s) 210
BseLI CCNNNNNNNGG 3 cut(s) 278, 363, 550
BseMII CTCAG 6 cut(s) 107, 110, 183, 390, 430, 1213
BseRI GAGGAG 1 cut(s) 665
BseXI GCAGC 7 cut(s) 196, 691, 756, 936, 938, 1145, 1148
BseYI CCCAGC 1 cut(s) 256
Bsh1285I CGRYCG 1 cut(s) 138
BshFI GGCC 5 cut(s) 483, 491, 542, 705, 874
BshNI GGYRCC 1 cut(s) 1058
BsiEI CGRYCG 1 cut(s) 138
BsiHKAI GWGCWC 1 cut(s) 198
BsiHKCI CYCGRG 1 cut(s) 221
BslFI GGGAC 1 cut(s) 1223
BslI CCNNNNNNNGG 3 cut(s) 278, 363, 550
BsmAI GTCTC 6 cut(s) 128, 324, 347, 425, 612, 852
BsmFI GGGAC 1 cut(s) 1223
BsmI GAATGC 1 cut(s) 1267
BsnI GGCC 5 cut(s) 483, 491, 542, 705, 874
Bso31I GGTCTC 1 cut(s) 852
BsoBI CYCGRG 1 cut(s) 221
Bsp1286I GDGCHC 1 cut(s) 198
Bsp143I GATC 5 cut(s) 135, 502, 709, 907, 1233
Bsp1720I GCTNAGC 1 cut(s) 192
Bsp19I CCATGG 3 cut(s) 357, 862, 1170
BspACI CCGC 6 cut(s) 169, 385, 409, 682, 889, 1099
BspANI GGCC 5 cut(s) 483, 491, 542, 705, 874
BspCNI CTCAG 6 cut(s) 106, 111, 184, 391, 429, 1212
BspHI TCATGA 1 cut(s) 451
BspLI GGNNCC 3 cut(s) 270, 706, 1060
BspMAI CTGCAG 2 cut(s) 468, 489
BspPI GGATC 1 cut(s) 510
BspQI GCTCTTC 1 cut(s) 941
BspT107I GGYRCC 1 cut(s) 1058
BspTNI GGTCTC 1 cut(s) 852
BssECI CCNNGG 6 cut(s) 32, 144, 357, 773, 862, 1170
BssMI GATC 5 cut(s) 135, 502, 709, 907, 1233
BssNAI GTATAC 1 cut(s) 516
BssSI CACGAG 1 cut(s) 1014
BssT1I CCWWGG 5 cut(s) 32, 144, 357, 862, 1170
Bst1107I GTATAC 1 cut(s) 516
Bst2BI CACGAG 1 cut(s) 1014
Bst2UI CCWGG 2 cut(s) 160, 774
Bst4CI ACNGT 1 cut(s) 179
Bst6I CTCTTC 4 cut(s) 282, 492, 522, 941
BstBAI YACGTR 1 cut(s) 199
BstC8I GCNNGC 9 cut(s) 79, 189, 354, 464, 485, 489, 903, 929, 1045
BstDEI CTNAG 7 cut(s) 93, 119, 192, 399, 416, 938, 1199
BstDSI CCRYGG 3 cut(s) 357, 862, 1170
BstF5I GGATG 1 cut(s) 210
BstKTI GATC 5 cut(s) 138, 505, 712, 910, 1236
BstMAI GTCTC 6 cut(s) 128, 324, 347, 425, 612, 852
BstMBI GATC 5 cut(s) 135, 502, 709, 907, 1233
BstMCI CGRYCG 1 cut(s) 138
BstMWI GCNNNNNNNGC 4 cut(s) 83, 155, 193, 948
BstNI CCWGG 2 cut(s) 160, 774
BstNSI RCATGY 2 cut(s) 352, 1047
BstSCI CCNGG 2 cut(s) 158, 772
BstSFI CTRYAG 2 cut(s) 464, 485
BstV1I GCAGC 7 cut(s) 196, 691, 756, 936, 938, 1145, 1148
BstXI CCANNNNNNTGG 1 cut(s) 179
BstZ17I GTATAC 1 cut(s) 516
BsuI GTATCC 1 cut(s) 151
BsuRI GGCC 5 cut(s) 483, 491, 542, 705, 874
BtgI CCRYGG 3 cut(s) 357, 862, 1170
BtsCI GGATG 1 cut(s) 210
BtsIMutI CAGTG 2 cut(s) 640, 766
Cac8I GCNNGC 9 cut(s) 79, 189, 354, 464, 485, 489, 903, 929, 1045
CciI TCATGA 1 cut(s) 451
Cfr13I GGNCC 4 cut(s) 36, 241, 541, 704
CseI GACGC 2 cut(s) 122, 943
Csp6I GTAC 2 cut(s) 26, 829
CspCI CAANNNNNGTGG 2 cut(s) 798, 833
CviQI GTAC 2 cut(s) 26, 829
DdeI CTNAG 7 cut(s) 93, 119, 192, 399, 416, 938, 1199
DpnI GATC 5 cut(s) 137, 504, 711, 909, 1235
DpnII GATC 5 cut(s) 135, 502, 709, 907, 1233
EaeI YGGCCR 1 cut(s) 872
Eam1104I CTCTTC 4 cut(s) 282, 492, 522, 941
EarI CTCTTC 4 cut(s) 282, 492, 522, 941
EciI GGCGGA 1 cut(s) 374
Eco130I CCWWGG 5 cut(s) 32, 144, 357, 862, 1170
Eco147I AGGCCT 1 cut(s) 483
Eco31I GGTCTC 1 cut(s) 852
Eco47I GGWCC 2 cut(s) 36, 241
Eco57I CTGAAG 2 cut(s) 629, 965
Eco88I CYCGRG 1 cut(s) 221
EcoRII CCWGG 2 cut(s) 158, 772
EcoT14I CCWWGG 5 cut(s) 32, 144, 357, 862, 1170
EcoT22I ATGCAT 2 cut(s) 1259, 1267
ErhI CCWWGG 5 cut(s) 32, 144, 357, 862, 1170
FalI AAGNNNNNCTT 4 cut(s) 70, 102, 279, 311
FaqI GGGAC 1 cut(s) 1223
FblI GTMKAC 2 cut(s) 515, 957
Fnu4HI GCNGC 8 cut(s) 185, 680, 770, 925, 952, 1100, 1159, 1162
FokI GGATG 1 cut(s) 217
Fsp4HI GCNGC 8 cut(s) 185, 680, 770, 925, 952, 1100, 1159, 1162
FspBI CTAG 2 cut(s) 110, 425
GluI GCNGC 8 cut(s) 185, 680, 770, 925, 952, 1100, 1159, 1162
GsaI CCCAGC 1 cut(s) 260
HaeIII GGCC 5 cut(s) 483, 491, 542, 705, 874
HgaI GACGC 2 cut(s) 122, 943
HindIII AAGCTT 3 cut(s) 63, 79, 791
HinfI GANTC 1 cut(s) 121
HphI GGTGA 1 cut(s) 1139
Hpy166II GTNNAC 4 cut(s) 19, 516, 958, 1019
Hpy188I TCNGA 3 cut(s) 120, 1000, 1202
Hpy188III TCNNGA 9 cut(s) 69, 223, 284, 296, 452, 647, 687, 1016, 1178
Hpy8I GTNNAC 4 cut(s) 19, 516, 958, 1019
Hpy99I CGWCG 2 cut(s) 704, 1188
HpyAV CCTTC 8 cut(s) 469, 473, 649, 878, 995, 1083, 1112, 1205
HpyCH4III ACNGT 1 cut(s) 179
HpyCH4IV ACGT 1 cut(s) 198
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 155, 193, 948
HpyF3I CTNAG 7 cut(s) 93, 119, 192, 399, 416, 938, 1199
HpySE526I ACGT 1 cut(s) 198
Kzo9I GATC 5 cut(s) 135, 502, 709, 907, 1233
LguI GCTCTTC 1 cut(s) 941
LmnI GCTCC 2 cut(s) 258, 268
Lsp1109I GCAGC 7 cut(s) 196, 691, 756, 936, 938, 1145, 1148
LweI GCATC 2 cut(s) 107, 571
MaeI CTAG 2 cut(s) 110, 425
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 2 cut(s) 3, 1070
MalI GATC 5 cut(s) 137, 504, 711, 909, 1235
MboI GATC 5 cut(s) 135, 502, 709, 907, 1233
MboII GAAGA 7 cut(s) 238, 299, 509, 539, 790, 958, 1132
MhlI GDGCHC 1 cut(s) 198
MluCI AATT 5 cut(s) 311, 380, 469, 674, 1094
MlyI GAGTC 1 cut(s) 130
Mph1103I ATGCAT 2 cut(s) 1259, 1267
MroXI GAANNNNTTC 1 cut(s) 973
MseI TTAA 4 cut(s) 231, 405, 696, 1110
MslI CAYNNNNRTG 3 cut(s) 177, 976, 1252
MspA1I CMGCKG 1 cut(s) 682
MspR9I CCNGG 2 cut(s) 160, 774
Mva1269I GAATGC 1 cut(s) 1267
MvaI CCWGG 2 cut(s) 160, 774
MwoI GCNNNNNNNGC 4 cut(s) 83, 155, 193, 948
NcoI CCATGG 3 cut(s) 357, 862, 1170
NdeII GATC 5 cut(s) 135, 502, 709, 907, 1233
NlaIV GGNNCC 3 cut(s) 270, 706, 1060
NmuCI GTSAC 1 cut(s) 3
NsiI ATGCAT 2 cut(s) 1259, 1267
NspI RCATGY 2 cut(s) 352, 1047
OliI CACNNNNGTG 1 cut(s) 177
PaeI GCATGC 1 cut(s) 1047
PaeR7I CTCGAG 1 cut(s) 221
PagI TCATGA 1 cut(s) 451
PceI AGGCCT 1 cut(s) 483
PciSI GCTCTTC 1 cut(s) 941
PcsI WCGNNNNNNNCGW 2 cut(s) 195, 705
PctI GAATGC 1 cut(s) 1267
PdmI GAANNNNTTC 1 cut(s) 973
PflMI CCANNNNNTGG 2 cut(s) 363, 550
PkrI GCNGC 8 cut(s) 186, 681, 771, 926, 953, 1101, 1160, 1163
Ple19I CGATCG 1 cut(s) 138
PleI GAGTC 1 cut(s) 129
PpsI GAGTC 1 cut(s) 129
Ppu21I YACGTR 1 cut(s) 199
Psp6I CCWGG 2 cut(s) 158, 772
PspFI CCCAGC 1 cut(s) 256
PspGI CCWGG 2 cut(s) 158, 772
PspN4I GGNNCC 3 cut(s) 270, 706, 1060
PspPI GGNCC 4 cut(s) 36, 241, 541, 704
PstI CTGCAG 2 cut(s) 468, 489
PvuI CGATCG 1 cut(s) 138
RsaI GTAC 2 cut(s) 27, 830
RsaNI GTAC 2 cut(s) 26, 829
RseI CAYNNNNRTG 3 cut(s) 177, 976, 1252
SapI GCTCTTC 1 cut(s) 941
SaqAI TTAA 4 cut(s) 231, 405, 696, 1110
SatI GCNGC 8 cut(s) 185, 680, 770, 925, 952, 1100, 1159, 1162
Sau3AI GATC 5 cut(s) 135, 502, 709, 907, 1233
Sau96I GGNCC 4 cut(s) 36, 241, 541, 704
SbfI CCTGCAGG 1 cut(s) 489
ScaI AGTACT 1 cut(s) 27
SchI GAGTC 1 cut(s) 130
ScrFI CCNGG 2 cut(s) 160, 774
SdaI CCTGCAGG 1 cut(s) 489
SduI GDGCHC 1 cut(s) 198
SfaNI GCATC 2 cut(s) 107, 571
SfcI CTRYAG 2 cut(s) 464, 485
Sfr274I CTCGAG 1 cut(s) 221
SinI GGWCC 2 cut(s) 36, 241
SlaI CTCGAG 1 cut(s) 221
SmiMI CAYNNNNRTG 3 cut(s) 177, 976, 1252
SmlI CTYRAG 3 cut(s) 221, 296, 521
SmoI CTYRAG 3 cut(s) 221, 296, 521
SphI GCATGC 1 cut(s) 1047
Sse8387I CCTGCAGG 1 cut(s) 489
Sse9I AATT 5 cut(s) 311, 380, 469, 674, 1094
SseBI AGGCCT 1 cut(s) 483
SsiI CCGC 6 cut(s) 169, 385, 409, 682, 889, 1099
SspI AATATT 1 cut(s) 670
SspMI CTAG 2 cut(s) 110, 425
StuI AGGCCT 1 cut(s) 483
StyD4I CCNGG 2 cut(s) 158, 772
StyI CCWWGG 5 cut(s) 32, 144, 357, 862, 1170
TaaI ACNGT 1 cut(s) 179
TaiI ACGT 1 cut(s) 201
TaqI TCGA 2 cut(s) 151, 222
TasI AATT 5 cut(s) 311, 380, 469, 674, 1094
TatI WGTACW 1 cut(s) 25
TauI GCSGC 1 cut(s) 1102
Tru1I TTAA 4 cut(s) 231, 405, 696, 1110
Tru9I TTAA 4 cut(s) 231, 405, 696, 1110
TscAI CASTG 2 cut(s) 640, 766
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 7 cut(s) 184, 679, 769, 924, 951, 1158, 1161
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 5 cut(s) 263, 440, 819, 897, 966
TspGWI ACGGA 1 cut(s) 254
TspRI CASTG 2 cut(s) 640, 766
Van91I CCANNNNNTGG 2 cut(s) 363, 550
VpaK11BI GGWCC 2 cut(s) 36, 241
XapI RAATTY 1 cut(s) 469
XceI RCATGY 2 cut(s) 352, 1047
XhoI CTCGAG 1 cut(s) 221
XmiI GTMKAC 2 cut(s) 515, 957
XmnI GAANNNNTTC 1 cut(s) 973
XspI CTAG 2 cut(s) 110, 425
ZrmI AGTACT 1 cut(s) 27
Zsp2I ATGCAT 2 cut(s) 1259, 1267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.