Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0028951

Physical Location & Seq

Genomic Coordinates Forward (+)

27407906 .. 27411172

Gene Structure 3267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G269300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGTTGATGCCTGTTCAGTGCTCAAAATGCCATAAAAATGTGCAGCTACTACCACCAGGCCCACCCTCCATGTGCTGCCATGTTGCCACCTATAGAGCTCCATACTCCTACTCCCACCACTATCCACCTCATCAACTGCCACTCACCGCCCTGCCTCCACCCCCTTACAGCCACTTGCCACCCAGGCCACCTCTGTTCGCCCATGTATGCAAGCGAGCTGTGATATGTGCTGTGTCTTATAAGAACTCCAAGCATGAGCTTAAGGGGTGCATTAACGATGCAAACTGCATGAGGTATTTGCTTGTCAACAGGTTCCACTTCCCAGAGTCCTCCATTCTCATGCTCACCGAAGAAGAGGCTGATCCTGATAGGCATCCATCCAAACAAAATATGATAAAGGCTCTGTATTGGCTTGTGCAAGATTGTCAACCAGGAGATTCTTTAGTATTTCATTATTCTGGTCATGGAAAACGCAAGAAGAACTACACTGGGGATGAGGTGGATGGATATGATGAATACCTGTGCCCGTTGGATTTTAAGACTGGGGAACTGATTTCAGACAATGAGATCAATGCAATAATTGTCAGACCTCTTCCTCATGGGGTTAAGCTCCATGCATTTATAGATGCTTGCCATAGTGGTACTGCTCTAGATTTGCCATTCCTCTGTAGAATGGACAGAAGTAGGAGATATCTGTGGGAGGACCATCGGCCTCCATCCGGTGTTTGGAAAGGGACAAATGGTGGGAAGGCTATTTGCTTCAGTGGCTGTGATGATCACCAGACCTCTGCTGATGCTTCAGCTCTGTCAAATACTACTCCAACTGGTGCAATGACTTTCTCTTTCATACAAGCCATTGAGCATGGACATGGAACTACATATGGAGACATCCTGAGTTCAATGCAATATACCATCCGCAATGCAGAGAATGAAGACACTGACACTGGGACATCTCCTCCTCTCAATATGACTAGAAGAGGGAGTCTTGCTGCCGGGTTTACACAGGAGCCACAGCTAACTGCAAGTGAAAAGTTTAAGCTGAAGAAGCCATTCTCCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C14 zf-LSD1

Protein Analysis

354

Amino Acids

39.44

Weight (kDa)

7.27

Isoelectric Point (pI)

44.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028951)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G269300_v2.0.a1
pyrus_communis	pycom01g18550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	240
AciI	CCGC	2 cut(s)	147, 916
AclWI	GGATC	1 cut(s)	356
AcuI	CTGAAG	3 cut(s)	745, 783, 1061
AfaI	GTAC	1 cut(s)	643
AfiI	CCNNNNNNNGG	2 cut(s)	719, 726
AflII	CTTAAG	1 cut(s)	260
AgsI	TTSAA	1 cut(s)	900
AjnI	CCWGG	3 cut(s)	55, 182, 430
AluBI	AGCT	8 cut(s)	46, 98, 218, 259, 610, 803, 1015, 1039
AluI	AGCT	8 cut(s)	46, 98, 218, 259, 610, 803, 1015, 1039
Alw21I	GWGCWC	2 cut(s)	23, 100
Alw26I	GTCTC	1 cut(s)	879
AlwI	GGATC	1 cut(s)	356
AlwNI	CAGNNNCTG	1 cut(s)	768
AoxI	GGCC	3 cut(s)	58, 185, 710
ApeKI	GCWGC	3 cut(s)	43, 75, 989
Asp700I	GAANNNNTTC	1 cut(s)	1049
AspS9I	GGNCC	2 cut(s)	59, 703
AsuC2I	CCSGG	1 cut(s)	994
AsuHPI	GGTGA	3 cut(s)	136, 337, 770
AvaII	GGWCC	1 cut(s)	703
BaeGI	GKGCMC	1 cut(s)	527
BanII	GRGCYC	1 cut(s)	100
BbsI	GAAGAC	1 cut(s)	939
Bbv12I	GWGCWC	2 cut(s)	23, 100
BbvI	GCAGC	3 cut(s)	55, 62, 976
BccI	CCATC	5 cut(s)	385, 497, 714, 724, 920
BciT130I	CCWGG	3 cut(s)	57, 184, 432
BclI	TGATCA	1 cut(s)	775
BcnI	CCSGG	1 cut(s)	994
BcoDI	GTCTC	1 cut(s)	879
BfaI	CTAG	2 cut(s)	650, 972
BfmI	CTRYAG	2 cut(s)	91, 667
BfrI	CTTAAG	1 cut(s)	260
BglI	GCCNNNNNGGC	1 cut(s)	184
BisI	GCNGC	3 cut(s)	44, 76, 990
BlsI	GCNGC	3 cut(s)	45, 77, 991
Bme1390I	CCNGG	4 cut(s)	57, 184, 432, 994
Bme18I	GGWCC	1 cut(s)	703
BmgT120I	GGNCC	2 cut(s)	59, 703
BmiI	GGNNCC	2 cut(s)	314, 1008
BmrFI	CCNGG	4 cut(s)	57, 184, 432, 994
BmrI	ACTGGG	3 cut(s)	498, 552, 954
BmsI	GCATC	4 cut(s)	268, 382, 616, 784
BmuI	ACTGGG	3 cut(s)	498, 552, 954
BpiI	GAAGAC	1 cut(s)	939
BpuMI	CCSGG	1 cut(s)	994
BsaBI	GATNNNNATC	1 cut(s)	372
BsaJI	CCNNGG	1 cut(s)	182
BsaWI	WCCGGW	1 cut(s)	719
BsaXI	ACNNNNNCTCC	4 cut(s)	95, 125, 940, 970
Bsc4I	CCNNNNNNNGG	2 cut(s)	719, 726
Bse1I	ACTGG	4 cut(s)	493, 547, 829, 949
Bse3DI	GCAATG	2 cut(s)	837, 925
Bse8I	GATNNNNATC	1 cut(s)	372
BseBI	CCWGG	3 cut(s)	57, 184, 432
BseDI	CCNNGG	1 cut(s)	182
BseGI	GGATG	7 cut(s)	373, 377, 499, 508, 716, 888, 912
BseJI	GATNNNNATC	1 cut(s)	372
BseLI	CCNNNNNNNGG	2 cut(s)	719, 726
BseMI	GCAATG	2 cut(s)	837, 925
BseMII	CTCAG	1 cut(s)	884
BseNI	ACTGG	4 cut(s)	493, 547, 829, 949
BseRI	GAGGAG	2 cut(s)	945, 948
BseSI	GKGCMC	1 cut(s)	527
BseXI	GCAGC	3 cut(s)	55, 62, 976
BsgI	GTGCAG	1 cut(s)	62
BshFI	GGCC	3 cut(s)	60, 187, 712
BsiHKAI	GWGCWC	2 cut(s)	23, 100
BsiSI	CCGG	2 cut(s)	720, 993
BslFI	GGGAC	2 cut(s)	748, 961
BslI	CCNNNNNNNGG	2 cut(s)	719, 726
BsmAI	GTCTC	1 cut(s)	879
BsmFI	GGGAC	2 cut(s)	748, 961
BsnI	GGCC	3 cut(s)	60, 187, 712
Bsp1286I	GDGCHC	3 cut(s)	23, 100, 527
Bsp143I	GATC	3 cut(s)	361, 567, 775
BspACI	CCGC	2 cut(s)	147, 916
BspANI	GGCC	3 cut(s)	60, 187, 712
BspCNI	CTCAG	1 cut(s)	885
BspLI	GGNNCC	2 cut(s)	314, 1008
BspPI	GGATC	1 cut(s)	356
BspTI	CTTAAG	1 cut(s)	260
BsrDI	GCAATG	2 cut(s)	837, 925
BsrI	ACTGG	4 cut(s)	493, 547, 829, 949
BssECI	CCNNGG	1 cut(s)	182
BssMI	GATC	3 cut(s)	361, 567, 775
Bst2UI	CCWGG	3 cut(s)	57, 184, 432
Bst6I	CTCTTC	3 cut(s)	348, 597, 970
BstAFI	CTTAAG	1 cut(s)	260
BstC8I	GCNNGC	3 cut(s)	212, 216, 631
BstDEI	CTNAG	1 cut(s)	893
BstF5I	GGATG	7 cut(s)	373, 377, 499, 508, 716, 888, 912
BstKTI	GATC	3 cut(s)	364, 570, 778
BstMAI	GTCTC	1 cut(s)	879
BstMBI	GATC	3 cut(s)	361, 567, 775
BstMWI	GCNNNNNNNGC	4 cut(s)	27, 184, 765, 1045
BstNI	CCWGG	3 cut(s)	57, 184, 432
BstSCI	CCNGG	4 cut(s)	55, 182, 430, 992
BstSFI	CTRYAG	2 cut(s)	91, 667
BstSLI	GKGCMC	1 cut(s)	527
BstV1I	GCAGC	3 cut(s)	55, 62, 976
BstV2I	GAAGAC	1 cut(s)	939
BsuRI	GGCC	3 cut(s)	60, 187, 712
BtsCI	GGATG	7 cut(s)	373, 377, 499, 508, 716, 888, 912
BtsIMutI	CAGTG	5 cut(s)	23, 486, 769, 936, 942
Cac8I	GCNNGC	3 cut(s)	212, 216, 631
CaiI	CAGNNNCTG	1 cut(s)	768
Cfr13I	GGNCC	2 cut(s)	59, 703
Csp6I	GTAC	1 cut(s)	642
CviQI	GTAC	1 cut(s)	642
DdeI	CTNAG	1 cut(s)	893
DpnI	GATC	3 cut(s)	363, 569, 777
DpnII	GATC	3 cut(s)	361, 567, 775
Eam1104I	CTCTTC	3 cut(s)	348, 597, 970
EarI	CTCTTC	3 cut(s)	348, 597, 970
Ecl136II	GAGCTC	1 cut(s)	98
Eco24I	GRGCYC	1 cut(s)	100
Eco32I	GATATC	1 cut(s)	692
Eco47I	GGWCC	1 cut(s)	703
Eco53kI	GAGCTC	1 cut(s)	98
Eco57I	CTGAAG	3 cut(s)	745, 783, 1061
EcoICRI	GAGCTC	1 cut(s)	98
EcoRII	CCWGG	3 cut(s)	55, 182, 430
EcoRV	GATATC	1 cut(s)	692
EcoT22I	ATGCAT	1 cut(s)	619
EcoT38I	GRGCYC	1 cut(s)	100
FaqI	GGGAC	2 cut(s)	748, 961
FauNDI	CATATG	1 cut(s)	880
FbaI	TGATCA	1 cut(s)	775
Fnu4HI	GCNGC	3 cut(s)	44, 76, 990
FokI	GGATG	7 cut(s)	360, 364, 506, 515, 703, 875, 899
FriOI	GRGCYC	1 cut(s)	100
Fsp4HI	GCNGC	3 cut(s)	44, 76, 990
FspBI	CTAG	2 cut(s)	650, 972
GluI	GCNGC	3 cut(s)	44, 76, 990
HaeIII	GGCC	3 cut(s)	60, 187, 712
HapII	CCGG	2 cut(s)	720, 993
HincII	GTYRAC	2 cut(s)	307, 428
HindII	GTYRAC	2 cut(s)	307, 428
HinfI	GANTC	3 cut(s)	326, 437, 982
HpaII	CCGG	2 cut(s)	720, 993
HphI	GGTGA	3 cut(s)	136, 337, 770
Hpy166II	GTNNAC	3 cut(s)	307, 428, 999
Hpy188I	TCNGA	2 cut(s)	559, 587
Hpy188III	TCNNGA	3 cut(s)	365, 650, 892
Hpy8I	GTNNAC	3 cut(s)	307, 428, 999
HpyAV	CCTTC	1 cut(s)	742
HpyF10VI	GCNNNNNNNGC	4 cut(s)	27, 184, 765, 1045
HpyF3I	CTNAG	1 cut(s)	893
Ksp22I	TGATCA	1 cut(s)	775
Kzo9I	GATC	3 cut(s)	361, 567, 775
LmnI	GCTCC	3 cut(s)	103, 615, 1006
Lsp1109I	GCAGC	3 cut(s)	55, 62, 976
LweI	GCATC	4 cut(s)	268, 382, 616, 784
MaeI	CTAG	2 cut(s)	650, 972
MalI	GATC	3 cut(s)	363, 569, 777
MboI	GATC	3 cut(s)	361, 567, 775
MboII	GAAGA	7 cut(s)	362, 365, 490, 584, 944, 987, 1054
MhlI	GDGCHC	3 cut(s)	23, 100, 527
MluCI	AATT	1 cut(s)	579
MlyI	GAGTC	2 cut(s)	335, 991
MmeI	TCCRAC	2 cut(s)	510, 845
Mph1103I	ATGCAT	1 cut(s)	619
MroXI	GAANNNNTTC	1 cut(s)	1049
MseI	TTAA	5 cut(s)	261, 273, 537, 606, 1035
MslI	CAYNNNNRTG	3 cut(s)	36, 338, 867
MspCI	CTTAAG	1 cut(s)	260
MspI	CCGG	2 cut(s)	720, 993
MspR9I	CCNGG	4 cut(s)	57, 184, 432, 994
MvaI	CCWGG	3 cut(s)	57, 184, 432
MwoI	GCNNNNNNNGC	4 cut(s)	27, 184, 765, 1045
NciI	CCSGG	1 cut(s)	994
NdeI	CATATG	1 cut(s)	880
NdeII	GATC	3 cut(s)	361, 567, 775
NlaIV	GGNNCC	2 cut(s)	314, 1008
NsiI	ATGCAT	1 cut(s)	619
PdmI	GAANNNNTTC	1 cut(s)	1049
PfeI	GAWTC	1 cut(s)	437
PkrI	GCNGC	3 cut(s)	45, 77, 991
PleI	GAGTC	2 cut(s)	334, 990
PpsI	GAGTC	2 cut(s)	334, 990
PsiI	TTATAA	1 cut(s)	240
Psp124BI	GAGCTC	1 cut(s)	100
Psp6I	CCWGG	3 cut(s)	55, 182, 430
PspGI	CCWGG	3 cut(s)	55, 182, 430
PspN4I	GGNNCC	2 cut(s)	314, 1008
PspPI	GGNCC	2 cut(s)	59, 703
PstNI	CAGNNNCTG	1 cut(s)	768
RsaI	GTAC	1 cut(s)	643
RsaNI	GTAC	1 cut(s)	642
RseI	CAYNNNNRTG	3 cut(s)	36, 338, 867
SacI	GAGCTC	1 cut(s)	100
SaqAI	TTAA	5 cut(s)	261, 273, 537, 606, 1035
SatI	GCNGC	3 cut(s)	44, 76, 990
Sau3AI	GATC	3 cut(s)	361, 567, 775
Sau96I	GGNCC	2 cut(s)	59, 703
SchI	GAGTC	2 cut(s)	335, 991
ScrFI	CCNGG	4 cut(s)	57, 184, 432, 994
SduI	GDGCHC	3 cut(s)	23, 100, 527
SfaNI	GCATC	4 cut(s)	268, 382, 616, 784
SfcI	CTRYAG	2 cut(s)	91, 667
SinI	GGWCC	1 cut(s)	703
SmiMI	CAYNNNNRTG	3 cut(s)	36, 338, 867
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	1 cut(s)	579
SsiI	CCGC	2 cut(s)	147, 916
SspMI	CTAG	2 cut(s)	650, 972
SstI	GAGCTC	1 cut(s)	100
StyD4I	CCNGG	4 cut(s)	55, 182, 430, 992
TasI	AATT	1 cut(s)	579
TfiI	GAWTC	1 cut(s)	437
Tru1I	TTAA	5 cut(s)	261, 273, 537, 606, 1035
Tru9I	TTAA	5 cut(s)	261, 273, 537, 606, 1035
TscAI	CASTG	5 cut(s)	23, 493, 769, 943, 949
TseI	GCWGC	3 cut(s)	43, 75, 989
TspDTI	ATGAA	4 cut(s)	440, 528, 835, 945
TspRI	CASTG	5 cut(s)	23, 493, 769, 943, 949
Vha464I	CTTAAG	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	703
XbaI	TCTAGA	1 cut(s)	649
XcmI	CCANNNNNNNNNTGG	1 cut(s)	723
XmnI	GAANNNNTTC	1 cut(s)	1049
XspI	CTAG	2 cut(s)	650, 972
Zsp2I	ATGCAT	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.