Prupe.2G270900_v2.0.a1

Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0028949
Physical Location & Seq
Reverse (-)
27496979 .. 27497599
621 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G270900.1

Sequence Viewer

Length: 192 bp
ATGTGTGGGAGGGCTCGCTGTAAGCTCAGGGCAGACGACATCCCTAGGGCTTGCCACCGCAGCCATGGCCCTGTCCGTACTGTTAACATGGACCGGTTTCGCCTGTTGTTCAATGCGTCACCGAAGTCGAATTTGCTTGTTGTTCGTAGAGAAGATGTAGCAGACGGCGGCGGCTTCTTGTTCATTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRAP

Protein Analysis

64

Amino Acids

7.11

Weight (kDa)

10.65

Isoelectric Point (pI)

48.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028949)

Species Orthologous Gene IDs
prunus_persica Prupe.2G270900_v2.0.a1 Prupe.6G190400_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 58, 168, 171
AcsI RAATTY 1 cut(s) 130
AfaI GTAC 1 cut(s) 79
AgeI ACCGGT 1 cut(s) 93
AgsI TTSAA 1 cut(s) 112
AluBI AGCT 1 cut(s) 25
AluI AGCT 1 cut(s) 25
AoxI GGCC 1 cut(s) 67
ApeKI GCWGC 1 cut(s) 60
ApoI RAATTY 1 cut(s) 130
AsiGI ACCGGT 1 cut(s) 93
AspA2I CCTAGG 1 cut(s) 44
AspS9I GGNCC 2 cut(s) 68, 91
AsuHPI GGTGA 1 cut(s) 111
AvaII GGWCC 1 cut(s) 91
AvrII CCTAGG 1 cut(s) 44
BanII GRGCYC 1 cut(s) 16
BbvI GCAGC 1 cut(s) 72
BceAI ACGGC 1 cut(s) 181
BfaI CTAG 1 cut(s) 45
BisI GCNGC 3 cut(s) 61, 169, 172
BlnI CCTAGG 1 cut(s) 44
BlsI GCNGC 3 cut(s) 62, 170, 173
Bme18I GGWCC 1 cut(s) 91
BmgT120I GGNCC 2 cut(s) 68, 91
Bpu10I CCTNAGC 1 cut(s) 26
BsaJI CCNNGG 2 cut(s) 44, 64
BsaWI WCCGGW 1 cut(s) 93
Bse118I RCCGGY 1 cut(s) 93
BseDI CCNNGG 2 cut(s) 44, 64
BseGI GGATG 1 cut(s) 39
BseMII CTCAG 1 cut(s) 40
BseXI GCAGC 1 cut(s) 72
BshFI GGCC 1 cut(s) 69
BshTI ACCGGT 1 cut(s) 93
BsiSI CCGG 1 cut(s) 94
BsnI GGCC 1 cut(s) 69
Bsp1286I GDGCHC 1 cut(s) 16
Bsp19I CCATGG 1 cut(s) 64
BspACI CCGC 3 cut(s) 58, 168, 171
BspANI GGCC 1 cut(s) 69
BspCNI CTCAG 1 cut(s) 39
BsrFI RCCGGY 1 cut(s) 93
BssAI RCCGGY 1 cut(s) 93
BssECI CCNNGG 2 cut(s) 44, 64
BssT1I CCWWGG 2 cut(s) 44, 64
Bst4CI ACNGT 1 cut(s) 82
BstC8I GCNNGC 2 cut(s) 16, 52
BstDEI CTNAG 1 cut(s) 26
BstDSI CCRYGG 1 cut(s) 64
BstF5I GGATG 1 cut(s) 39
BstMWI GCNNNNNNNGC 2 cut(s) 60, 66
BstV1I GCAGC 1 cut(s) 72
BsuRI GGCC 1 cut(s) 69
BtgI CCRYGG 1 cut(s) 64
BtsCI GGATG 1 cut(s) 39
Cac8I GCNNGC 2 cut(s) 16, 52
Cfr10I RCCGGY 1 cut(s) 93
Cfr13I GGNCC 2 cut(s) 68, 91
CseI GACGC 1 cut(s) 105
Csp6I GTAC 1 cut(s) 78
CspAI ACCGGT 1 cut(s) 93
CviAII CATG 2 cut(s) 65, 88
CviJI RGCY 6 cut(s) 14, 25, 50, 63, 69, 174
CviKI_1 RGCY 6 cut(s) 14, 25, 50, 63, 69, 174
CviQI GTAC 1 cut(s) 78
DdeI CTNAG 1 cut(s) 26
Eco130I CCWWGG 2 cut(s) 44, 64
Eco24I GRGCYC 1 cut(s) 16
Eco47I GGWCC 1 cut(s) 91
EcoT14I CCWWGG 2 cut(s) 44, 64
EcoT38I GRGCYC 1 cut(s) 16
ErhI CCWWGG 2 cut(s) 44, 64
FaeI CATG 2 cut(s) 68, 91
FaiI YATR 3 cut(s) 66, 89, 190
FatI CATG 2 cut(s) 64, 87
Fnu4HI GCNGC 3 cut(s) 61, 169, 172
FokI GGATG 1 cut(s) 26
FriOI GRGCYC 1 cut(s) 16
Fsp4HI GCNGC 3 cut(s) 61, 169, 172
FspBI CTAG 1 cut(s) 45
GluI GCNGC 3 cut(s) 61, 169, 172
HaeIII GGCC 1 cut(s) 69
HapII CCGG 1 cut(s) 94
HgaI GACGC 1 cut(s) 105
Hin1II CATG 2 cut(s) 68, 91
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HpaI GTTAAC 1 cut(s) 85
HpaII CCGG 1 cut(s) 94
HphI GGTGA 1 cut(s) 111
Hpy166II GTNNAC 1 cut(s) 85
Hpy8I GTNNAC 1 cut(s) 85
HpyCH4III ACNGT 1 cut(s) 82
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 66
HpyF3I CTNAG 1 cut(s) 26
Hsp92II CATG 2 cut(s) 68, 91
KspAI GTTAAC 1 cut(s) 85
LpnPI CCDG 4 cut(s) 13, 84, 107, 116
Lsp1109I GCAGC 1 cut(s) 72
MaeI CTAG 1 cut(s) 45
MaeIII GTNAC 1 cut(s) 117
MboII GAAGA 1 cut(s) 164
MhlI GDGCHC 1 cut(s) 16
MluCI AATT 1 cut(s) 130
MnlI CCTC 1 cut(s) 3
MseI TTAA 1 cut(s) 84
MspI CCGG 1 cut(s) 94
MwoI GCNNNNNNNGC 2 cut(s) 60, 66
NcoI CCATGG 1 cut(s) 64
NlaIII CATG 2 cut(s) 68, 91
NmuCI GTSAC 1 cut(s) 117
PinAI ACCGGT 1 cut(s) 93
PkrI GCNGC 3 cut(s) 62, 170, 173
PspPI GGNCC 2 cut(s) 68, 91
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 3 cut(s) 61, 169, 172
Sau96I GGNCC 2 cut(s) 68, 91
SduI GDGCHC 1 cut(s) 16
SetI ASST 1 cut(s) 27
SinI GGWCC 1 cut(s) 91
Sse9I AATT 1 cut(s) 130
SsiI CCGC 3 cut(s) 58, 168, 171
SspMI CTAG 1 cut(s) 45
StyI CCWWGG 2 cut(s) 44, 64
TaaI ACNGT 1 cut(s) 82
TaqI TCGA 1 cut(s) 128
TasI AATT 1 cut(s) 130
TauI GCSGC 2 cut(s) 171, 174
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TseFI GTSAC 1 cut(s) 117
TseI GCWGC 1 cut(s) 60
Tsp45I GTSAC 1 cut(s) 117
TspDTI ATGAA 1 cut(s) 172
TspGWI ACGGA 1 cut(s) 65
VpaK11BI GGWCC 1 cut(s) 91
XapI RAATTY 1 cut(s) 130
XcmI CCANNNNNNNNNTGG 1 cut(s) 62
XmaJI CCTAGG 1 cut(s) 44
XspI CTAG 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.