Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0021845

Physical Location & Seq

Genomic Coordinates Reverse (-)

359315 .. 364165

Gene Structure 4851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G006000.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGCTTCCGTAAGTGTGGTTCCTGCTTCTGGAATTAGAGACCCCAGTGGAAATGTAGTTGGTGTCGATAGTTTGCCTAGTGGGATGAATGATATGAAAATTAGGGATGAAAAGGAAATGGAAGCAACTATTGTTGATGGTAATGGAACAGAGGCGGGTCATATCATTGTCACAACTATTGGTGGAAAGAATGGCCAACCAAAACAGACAATAAGCTATATGGCTGAGCGTGTTGTTGGACATGGATCTTTTGGATTGGTTTTCCAGGCCAAATGTTTAGAAACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGACAAGAGGTACAAGAACCGGGAGTTGCAAACCATGCGTCTACTAGACCACCCAAACATTGTGTCCCTTAAACATTGTTTCTTTTCGACAACTGGAAAAGATGAGCTATACCTTAACCTTGTACTTGAGTATGTCCCCGAGACTGTCCATAGGGTGATCAAACACTACAGTAAGATGAACCAGAGGATGCCACTTATATATGTCAAACTTTATTTTTACCAGATTTGTAGAGCACTTGCTTACATTCACAATAGTATTGGAGTTTGCCACAGGGACATTAAGCCTCAAAATTTGTTGGTCAATCCACATACTCATCAGCTTAAAATCTGTGACTTTGGAAGTGCGAAAGTCTTGGTAAGAGGGGAACCCAACATATCTTACATCTGTTCGAGGTATTATCGAGCACCTGAACTTATATTTGGTGCAACCGAGTATACAACAGCCATTGACATCTGGTCTGCTGGCTGTGTTCTAGCTGAGCTACTGCTTGGACAGCCCCTATTTCCTGGAGAAAGTGGAGTAGACCAGCTTGTTGAAATCATCAAGGTTTTAGGTACCCCAACAAGAGAGGAAATAAAGTGCATGAACCCTAACTACACAGAGTTTAAGTTTCCCCAGATTAAAGCTCACCCATGGCACAAGATATTCCACAAGCGCATGCCCCCTGAAGCTGTGGATCTTGTATCGAGGCTACTGCAGTACTCTCCAAACCTTCGAAGTACAGCTTTGGAGGCCTTAGCTCATCCGTTCTTTGATGAGTTGCGTGACCCTAACACCCGCTTGCCAAATGGACGTTTCCTCCCCCCATTGTTCAACTTTAAGGCTCATGAACTGAAGGGAGTACCTGCAGAGATGCTGGTTAAGCTGATTCCAGAGCATGCAAGAAAACAGTGTGCCTTCCTTGGGTCGTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko01521 ko04012 ko04062 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

411

Amino Acids

46.15

Weight (kDa)

8.81

Isoelectric Point (pI)

35.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021845)

Species	Orthologous Gene IDs
malus_domestica	MD09G1287200.v1.1 MD17G1279400.v1.1
prunus_persica	Prupe.3G006000_v2.0.a1 Prupe.3G006000_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1171
Acc65I	GGTACC	1 cut(s)	872
AccB1I	GGYRCC	1 cut(s)	872
AccI	GTMKAC	3 cut(s)	358, 752, 840
AciI	CCGC	2 cut(s)	155, 1096
AclWI	GGATC	2 cut(s)	253, 1002
AcoI	YGGCCR	1 cut(s)	193
AcsI	RAATTY	1 cut(s)	607
AcuI	CTGAAG	2 cut(s)	1005, 1172
AfaI	GTAC	6 cut(s)	329, 441, 874, 1019, 1039, 1161
AfiI	CCNNNNNNNGG	2 cut(s)	29, 1221
AgsI	TTSAA	3 cut(s)	317, 854, 1132
AhdI	GACNNNNNGTC	1 cut(s)	772
AjnI	CCWGG	2 cut(s)	264, 823
AjuI	GAANNNNNNNTTGG	2 cut(s)	720, 752
Alw21I	GWGCWC	2 cut(s)	553, 724
Alw26I	GTCTC	2 cut(s)	33, 452
AlwI	GGATC	2 cut(s)	253, 1002
Ama87I	CYCGRG	1 cut(s)	455
AoxI	GGCC	3 cut(s)	193, 267, 1050
ApoI	RAATTY	1 cut(s)	607
ArsI	GACNNNNNNTTYG	4 cut(s)	340, 365, 372, 397
Asp718I	GGTACC	1 cut(s)	872
AspLEI	GCGC	1 cut(s)	975
AsuC2I	CCSGG	1 cut(s)	338
AsuHPI	GGTGA	3 cut(s)	299, 484, 938
AsuII	TTCGAA	1 cut(s)	1033
AvaI	CYCGRG	1 cut(s)	455
BalI	TGGCCA	1 cut(s)	195
BanI	GGYRCC	1 cut(s)	872
Bbv12I	GWGCWC	2 cut(s)	553, 724
BccI	CCATC	1 cut(s)	131
BcgI	CGANNNNNNTGC	2 cut(s)	994, 1028
BciT130I	CCWGG	2 cut(s)	266, 825
BclI	TGATCA	1 cut(s)	474
BcnI	CCSGG	1 cut(s)	338
BcoDI	GTCTC	2 cut(s)	33, 452
BfaI	CTAG	3 cut(s)	78, 362, 791
BfmI	CTRYAG	3 cut(s)	484, 1013, 1164
BfuAI	ACCTGC	1 cut(s)	1171
BlpI	GCTNAGC	2 cut(s)	225, 795
BmcAI	AGTACT	1 cut(s)	1019
Bme1390I	CCNGG	3 cut(s)	266, 338, 825
BmeRI	GACNNNNNGTC	1 cut(s)	772
BmeT110I	CYCGRG	1 cut(s)	455
BmiI	GGNNCC	3 cut(s)	21, 684, 874
BmrFI	CCNGG	3 cut(s)	266, 338, 825
BmrI	ACTGGG	1 cut(s)	39
BmsI	GCATC	2 cut(s)	495, 1161
BmuI	ACTGGG	1 cut(s)	39
BpmI	CTGGAG	1 cut(s)	846
Bpu10I	CCTNAGC	1 cut(s)	1054
Bpu1102I	GCTNAGC	2 cut(s)	225, 795
Bpu14I	TTCGAA	1 cut(s)	1033
BpuEI	CTTGAG	1 cut(s)	464
BpuMI	CCSGG	1 cut(s)	338
BsaI	GGTCTC	1 cut(s)	33
BsaJI	CCNNGG	2 cut(s)	950, 1219
BsaXI	ACNNNNNCTCC	2 cut(s)	1101, 1131
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 1221
Bse1I	ACTGG	3 cut(s)	45, 289, 415
BseBI	CCWGG	2 cut(s)	266, 825
BseDI	CCNNGG	2 cut(s)	950, 1219
BseGI	GGATG	4 cut(s)	90, 112, 510, 1060
BseLI	CCNNNNNNNGG	2 cut(s)	29, 1221
BseMII	CTCAG	2 cut(s)	216, 786
BseNI	ACTGG	3 cut(s)	45, 289, 415
BshFI	GGCC	3 cut(s)	195, 269, 1052
BshNI	GGYRCC	1 cut(s)	872
BsiHKAI	GWGCWC	2 cut(s)	553, 724
BsiHKCI	CYCGRG	1 cut(s)	455
BsiSI	CCGG	1 cut(s)	337
BslFI	GGGAC	3 cut(s)	367, 437, 605
BslI	CCNNNNNNNGG	2 cut(s)	29, 1221
BsmAI	GTCTC	2 cut(s)	33, 452
BsmFI	GGGAC	3 cut(s)	367, 437, 605
BsnI	GGCC	3 cut(s)	195, 269, 1052
Bso31I	GGTCTC	1 cut(s)	33
BsoBI	CYCGRG	1 cut(s)	455
Bsp119I	TTCGAA	1 cut(s)	1033
Bsp1286I	GDGCHC	2 cut(s)	553, 724
Bsp143I	GATC	3 cut(s)	245, 474, 994
Bsp1720I	GCTNAGC	2 cut(s)	225, 795
Bsp19I	CCATGG	1 cut(s)	950
BspACI	CCGC	2 cut(s)	155, 1096
BspANI	GGCC	3 cut(s)	195, 269, 1052
BspCNI	CTCAG	2 cut(s)	217, 787
BspHI	TCATGA	1 cut(s)	1144
BspLI	GGNNCC	3 cut(s)	21, 684, 874
BspMAI	CTGCAG	2 cut(s)	1017, 1168
BspMI	ACCTGC	1 cut(s)	1171
BspPI	GGATC	2 cut(s)	253, 1002
BspT104I	TTCGAA	1 cut(s)	1033
BspT107I	GGYRCC	1 cut(s)	872
BspTNI	GGTCTC	1 cut(s)	33
BsrI	ACTGG	3 cut(s)	45, 289, 415
BssECI	CCNNGG	2 cut(s)	950, 1219
BssMI	GATC	3 cut(s)	245, 474, 994
BssNAI	GTATAC	1 cut(s)	753
BssT1I	CCWWGG	2 cut(s)	950, 1219
Bst1107I	GTATAC	1 cut(s)	753
Bst2UI	CCWGG	2 cut(s)	266, 825
Bst4CI	ACNGT	4 cut(s)	295, 463, 488, 1209
BstAPI	GCANNNNNTGC	1 cut(s)	352
BstBI	TTCGAA	1 cut(s)	1033
BstC8I	GCNNGC	4 cut(s)	781, 977, 1100, 1197
BstDEI	CTNAG	3 cut(s)	225, 795, 1054
BstDSI	CCRYGG	1 cut(s)	950
BstF5I	GGATG	4 cut(s)	90, 112, 510, 1060
BstHHI	GCGC	1 cut(s)	975
BstKTI	GATC	3 cut(s)	248, 477, 997
BstMAI	GTCTC	2 cut(s)	33, 452
BstMBI	GATC	3 cut(s)	245, 474, 994
BstMWI	GCNNNNNNNGC	4 cut(s)	352, 811, 1049, 1180
BstNI	CCWGG	2 cut(s)	266, 825
BstNSI	RCATGY	2 cut(s)	979, 1199
BstSCI	CCNGG	3 cut(s)	264, 336, 823
BstSFI	CTRYAG	3 cut(s)	484, 1013, 1164
BstX2I	RGATCY	2 cut(s)	245, 994
BstYI	RGATCY	2 cut(s)	245, 994
BstZ17I	GTATAC	1 cut(s)	753
BsuRI	GGCC	3 cut(s)	195, 269, 1052
BtgI	CCRYGG	1 cut(s)	950
BtsCI	GGATG	4 cut(s)	90, 112, 510, 1060
BtsIMutI	CAGTG	2 cut(s)	52, 1214
BveI	ACCTGC	1 cut(s)	1171
Cac8I	GCNNGC	4 cut(s)	781, 977, 1100, 1197
CciI	TCATGA	1 cut(s)	1144
CfoI	GCGC	1 cut(s)	975
CseI	GACGC	1 cut(s)	344
Csp6I	GTAC	6 cut(s)	328, 440, 873, 1018, 1038, 1160
CviAII	CATG	7 cut(s)	242, 352, 901, 951, 976, 1145, 1196
CviQI	GTAC	6 cut(s)	328, 440, 873, 1018, 1038, 1160
DdeI	CTNAG	3 cut(s)	225, 795, 1054
DpnI	GATC	3 cut(s)	247, 476, 996
DpnII	GATC	3 cut(s)	245, 474, 994
DriI	GACNNNNNGTC	1 cut(s)	772
EaeI	YGGCCR	1 cut(s)	193
Eam1105I	GACNNNNNGTC	1 cut(s)	772
Eco130I	CCWWGG	2 cut(s)	950, 1219
Eco147I	AGGCCT	1 cut(s)	1052
Eco31I	GGTCTC	1 cut(s)	33
Eco57I	CTGAAG	2 cut(s)	1005, 1172
Eco88I	CYCGRG	1 cut(s)	455
EcoRII	CCWGG	2 cut(s)	264, 823
EcoT14I	CCWWGG	2 cut(s)	950, 1219
ErhI	CCWWGG	2 cut(s)	950, 1219
FaeI	CATG	7 cut(s)	245, 355, 904, 954, 979, 1148, 1199
FalI	AAGNNNNNCTT	2 cut(s)	1027, 1059
FaqI	GGGAC	3 cut(s)	367, 437, 605
FatI	CATG	7 cut(s)	241, 351, 900, 950, 975, 1144, 1195
FauI	CCCGC	2 cut(s)	148, 1103
FbaI	TGATCA	1 cut(s)	474
FblI	GTMKAC	3 cut(s)	358, 752, 840
FokI	GGATG	4 cut(s)	97, 119, 517, 1047
FspBI	CTAG	3 cut(s)	78, 362, 791
GlaI	GCGC	1 cut(s)	974
GsuI	CTGGAG	1 cut(s)	846
HaeIII	GGCC	3 cut(s)	195, 269, 1052
HapII	CCGG	1 cut(s)	337
HgaI	GACGC	1 cut(s)	344
HhaI	GCGC	1 cut(s)	975
Hin1II	CATG	7 cut(s)	245, 355, 904, 954, 979, 1148, 1199
Hin6I	GCGC	1 cut(s)	973
HinP1I	GCGC	1 cut(s)	973
HinfI	GANTC	1 cut(s)	1186
HpaII	CCGG	1 cut(s)	337
HphI	GGTGA	3 cut(s)	299, 484, 938
Hpy166II	GTNNAC	3 cut(s)	359, 753, 841
Hpy188III	TCNNGA	5 cut(s)	30, 317, 1145, 1190, 1230
Hpy8I	GTNNAC	3 cut(s)	359, 753, 841
Hpy99I	CGWCG	1 cut(s)	1231
HpyAV	CCTTC	3 cut(s)	1040, 1147, 1225
HpyCH4III	ACNGT	4 cut(s)	295, 463, 488, 1209
HpyCH4IV	ACGT	1 cut(s)	1111
HpyCH4V	TGCA	6 cut(s)	346, 743, 900, 1015, 1166, 1199
HpyF10VI	GCNNNNNNNGC	4 cut(s)	352, 811, 1049, 1180
HpyF3I	CTNAG	3 cut(s)	225, 795, 1054
HpySE526I	ACGT	1 cut(s)	1111
Hsp92II	CATG	7 cut(s)	245, 355, 904, 954, 979, 1148, 1199
HspAI	GCGC	1 cut(s)	973
KpnI	GGTACC	1 cut(s)	876
Ksp22I	TGATCA	1 cut(s)	474
Kzo9I	GATC	3 cut(s)	245, 474, 994
LweI	GCATC	2 cut(s)	495, 1161
MaeI	CTAG	3 cut(s)	78, 362, 791
MaeII	ACGT	1 cut(s)	1111
MaeIII	GTNAC	3 cut(s)	169, 647, 1082
MalI	GATC	3 cut(s)	247, 476, 996
MboI	GATC	3 cut(s)	245, 474, 994
MboII	GAAGA	1 cut(s)	305
MflI	RGATCY	2 cut(s)	245, 994
MhlI	GDGCHC	2 cut(s)	553, 724
MlsI	TGGCCA	1 cut(s)	195
MluCI	AATT	3 cut(s)	33, 99, 607
MluNI	TGGCCA	1 cut(s)	195
MmeI	TCCRAC	1 cut(s)	217
Mox20I	TGGCCA	1 cut(s)	195
MscI	TGGCCA	1 cut(s)	195
MseI	TTAA	9 cut(s)	303, 387, 432, 597, 639, 924, 939, 1137, 1179
Msp20I	TGGCCA	1 cut(s)	195
MspI	CCGG	1 cut(s)	337
MspR9I	CCNGG	3 cut(s)	266, 338, 825
MvaI	CCWGG	2 cut(s)	266, 825
MwoI	GCNNNNNNNGC	4 cut(s)	352, 811, 1049, 1180
NciI	CCSGG	1 cut(s)	338
NcoI	CCATGG	1 cut(s)	950
NdeII	GATC	3 cut(s)	245, 474, 994
NlaIII	CATG	7 cut(s)	245, 355, 904, 954, 979, 1148, 1199
NlaIV	GGNNCC	3 cut(s)	21, 684, 874
NmuCI	GTSAC	3 cut(s)	169, 647, 1082
NspI	RCATGY	2 cut(s)	979, 1199
NspV	TTCGAA	1 cut(s)	1033
PaeI	GCATGC	2 cut(s)	979, 1199
PagI	TCATGA	1 cut(s)	1144
PceI	AGGCCT	1 cut(s)	1052
PfeI	GAWTC	1 cut(s)	1186
PfoI	TCCNGGA	1 cut(s)	823
Psp6I	CCWGG	2 cut(s)	264, 823
PspGI	CCWGG	2 cut(s)	264, 823
PspN4I	GGNNCC	3 cut(s)	21, 684, 874
PsrI	GAACNNNNNNTAC	3 cut(s)	35, 896, 928
PstI	CTGCAG	2 cut(s)	1017, 1168
PsuI	RGATCY	2 cut(s)	245, 994
RsaI	GTAC	6 cut(s)	329, 441, 874, 1019, 1039, 1161
RsaNI	GTAC	6 cut(s)	328, 440, 873, 1018, 1038, 1160
SaqAI	TTAA	9 cut(s)	303, 387, 432, 597, 639, 924, 939, 1137, 1179
Sau3AI	GATC	3 cut(s)	245, 474, 994
ScaI	AGTACT	1 cut(s)	1019
ScrFI	CCNGG	3 cut(s)	266, 338, 825
SduI	GDGCHC	2 cut(s)	553, 724
SfaNI	GCATC	2 cut(s)	495, 1161
SfcI	CTRYAG	3 cut(s)	484, 1013, 1164
SfuI	TTCGAA	1 cut(s)	1033
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
SphI	GCATGC	2 cut(s)	979, 1199
Sse9I	AATT	3 cut(s)	33, 99, 607
SseBI	AGGCCT	1 cut(s)	1052
SsiI	CCGC	2 cut(s)	155, 1096
SspMI	CTAG	3 cut(s)	78, 362, 791
StuI	AGGCCT	1 cut(s)	1052
StyD4I	CCNGG	3 cut(s)	264, 336, 823
StyI	CCWWGG	2 cut(s)	950, 1219
TaaI	ACNGT	4 cut(s)	295, 463, 488, 1209
TaiI	ACGT	1 cut(s)	1114
TaqI	TCGA	6 cut(s)	66, 404, 707, 718, 1004, 1033
TasI	AATT	3 cut(s)	33, 99, 607
TatI	WGTACW	3 cut(s)	439, 1017, 1037
TfiI	GAWTC	1 cut(s)	1186
Tru1I	TTAA	9 cut(s)	303, 387, 432, 597, 639, 924, 939, 1137, 1179
Tru9I	TTAA	9 cut(s)	303, 387, 432, 597, 639, 924, 939, 1137, 1179
TscAI	CASTG	2 cut(s)	52, 1214
TseFI	GTSAC	3 cut(s)	169, 647, 1082
Tsp45I	GTSAC	3 cut(s)	169, 647, 1082
TspDTI	ATGAA	6 cut(s)	101, 110, 123, 509, 917, 1161
TspGWI	ACGGA	1 cut(s)	1053
TspRI	CASTG	2 cut(s)	52, 1214
XapI	RAATTY	1 cut(s)	607
XceI	RCATGY	2 cut(s)	979, 1199
XmiI	GTMKAC	3 cut(s)	358, 752, 840
XspI	CTAG	3 cut(s)	78, 362, 791
ZrmI	AGTACT	1 cut(s)	1019

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.