Prupe.3G018800_v2.0.a1

Lateral organ boundaries (LOB) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0024297
Physical Location & Seq
Forward (+)
1331569 .. 1332633
1065 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G018800.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 456 bp
ATGGCCAATCCAACAAGATGTGCAGGTTGCAAATTTTTGAGAAGAAAATGCGCTCAAGATTGTGTTCTGGCACCCTATTTCCCCTCATCCAATCCAGAGAGATTTGCTTGTGTTCATAAGATCTTCGGTGCCGGCAACATTACCAAAATGCTACAGCAACTTCCAGTCCATGTAAGAGAAGCAGCAGCAGACTGCATGTTTTATGAAGCATCAATACGTGTTGAAGATCCAATATATGGGTGTGTCAAAATAATTTCTCAATTGCAACAAGATTTATTTCAGGCTCAATCTGAGATGGCCAAGACAAAAGCTCAAATAGCGTTCTACAATGCACAACAGCAACTAAATCAGCAGCAGCAAAATATGGTTGATGGTGTTGATGATAATTACCAACAAGACCAACACAGGGAATCTTCAAGGCTCGGTTTAGATGATCACTTTTACAGCTTGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

152

Amino Acids

17.17

Weight (kDa)

6.4

Isoelectric Point (pI)

63.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024297)

Species Orthologous Gene IDs
malus_domestica MD09G1160200.v1.1 MD17G1146000.v1.1
prunus_persica Prupe.3G018800_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 14
AccB1I GGYRCC 2 cut(s) 70, 128
AccB7I CCANNNNNTGG 1 cut(s) 236
AclWI GGATC 1 cut(s) 221
AcoI YGGCCR 2 cut(s) 3, 297
AcsI RAATTY 1 cut(s) 32
AfiI CCNNNNNNNGG 2 cut(s) 236, 406
AflIII ACRYGT 1 cut(s) 217
AgsI TTSAA 2 cut(s) 224, 417
AluBI AGCT 2 cut(s) 311, 447
AluI AGCT 2 cut(s) 311, 447
AlwI GGATC 1 cut(s) 221
AoxI GGCC 2 cut(s) 3, 297
ApeKI GCWGC 4 cut(s) 182, 185, 352, 355
ApoI RAATTY 1 cut(s) 32
AspLEI GCGC 1 cut(s) 53
BalI TGGCCA 2 cut(s) 5, 299
BanI GGYRCC 2 cut(s) 70, 128
BarI GAAGNNNNNNTAC 2 cut(s) 198, 230
BbvI GCAGC 4 cut(s) 194, 197, 364, 367
BccI CCATC 2 cut(s) 289, 365
BclI TGATCA 1 cut(s) 433
BfmI CTRYAG 1 cut(s) 152
BfuAI ACCTGC 1 cut(s) 14
BglII AGATCT 1 cut(s) 120
BisI GCNGC 4 cut(s) 183, 186, 353, 356
BlsI GCNGC 4 cut(s) 184, 187, 354, 357
BmiI GGNNCC 2 cut(s) 72, 130
BmsI GCATC 1 cut(s) 218
BpuEI CTTGAG 1 cut(s) 39
BsaAI YACGTR 1 cut(s) 218
Bsc4I CCNNNNNNNGG 2 cut(s) 236, 406
Bse118I RCCGGY 1 cut(s) 131
Bse1I ACTGG 1 cut(s) 164
BseGI GGATG 1 cut(s) 86
BseLI CCNNNNNNNGG 2 cut(s) 236, 406
BseMII CTCAG 1 cut(s) 282
BseNI ACTGG 1 cut(s) 164
BseXI GCAGC 4 cut(s) 194, 197, 364, 367
BsgI GTGCAG 1 cut(s) 42
BshFI GGCC 2 cut(s) 5, 299
BshNI GGYRCC 2 cut(s) 70, 128
BsiSI CCGG 1 cut(s) 132
BslI CCNNNNNNNGG 2 cut(s) 236, 406
BsnI GGCC 2 cut(s) 5, 299
Bsp143I GATC 3 cut(s) 120, 226, 433
BspANI GGCC 2 cut(s) 5, 299
BspCNI CTCAG 1 cut(s) 283
BspLI GGNNCC 2 cut(s) 72, 130
BspMI ACCTGC 1 cut(s) 14
BspPI GGATC 1 cut(s) 221
BspT107I GGYRCC 2 cut(s) 70, 128
BsrFI RCCGGY 1 cut(s) 131
BsrI ACTGG 1 cut(s) 164
BssAI RCCGGY 1 cut(s) 131
BssMI GATC 3 cut(s) 120, 226, 433
BstBAI YACGTR 1 cut(s) 218
BstC8I GCNNGC 1 cut(s) 133
BstDEI CTNAG 1 cut(s) 291
BstF5I GGATG 1 cut(s) 86
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 3 cut(s) 123, 229, 436
BstMBI GATC 3 cut(s) 120, 226, 433
BstMWI GCNNNNNNNGC 1 cut(s) 317
BstNSI RCATGY 1 cut(s) 199
BstSFI CTRYAG 1 cut(s) 152
BstV1I GCAGC 4 cut(s) 194, 197, 364, 367
BstX2I RGATCY 2 cut(s) 120, 226
BstYI RGATCY 2 cut(s) 120, 226
BsuRI GGCC 2 cut(s) 5, 299
BtsCI GGATG 1 cut(s) 86
BveI ACCTGC 1 cut(s) 14
Cac8I GCNNGC 1 cut(s) 133
CfoI GCGC 1 cut(s) 53
Cfr10I RCCGGY 1 cut(s) 131
CviAII CATG 2 cut(s) 170, 196
CviJI RGCY 6 cut(s) 5, 284, 299, 311, 421, 447
CviKI_1 RGCY 6 cut(s) 5, 284, 299, 311, 421, 447
DdeI CTNAG 1 cut(s) 291
DpnI GATC 3 cut(s) 122, 228, 435
DpnII GATC 3 cut(s) 120, 226, 433
EaeI YGGCCR 2 cut(s) 3, 297
FaeI CATG 2 cut(s) 173, 199
FaiI YATR 7 cut(s) 117, 171, 197, 204, 235, 237, 365
FatI CATG 2 cut(s) 169, 195
FbaI TGATCA 1 cut(s) 433
Fnu4HI GCNGC 4 cut(s) 183, 186, 353, 356
FokI GGATG 1 cut(s) 73
Fsp4HI GCNGC 4 cut(s) 183, 186, 353, 356
GlaI GCGC 1 cut(s) 52
GluI GCNGC 4 cut(s) 183, 186, 353, 356
HaeIII GGCC 2 cut(s) 5, 299
HapII CCGG 1 cut(s) 132
HhaI GCGC 1 cut(s) 53
Hin1II CATG 2 cut(s) 173, 199
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HinfI GANTC 1 cut(s) 410
HpaII CCGG 1 cut(s) 132
Hpy188I TCNGA 1 cut(s) 292
Hpy188III TCNNGA 2 cut(s) 56, 95
HpyCH4IV ACGT 1 cut(s) 217
HpyCH4V TGCA 5 cut(s) 23, 30, 195, 265, 332
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
HpyF3I CTNAG 1 cut(s) 291
HpySE526I ACGT 1 cut(s) 217
Hsp92II CATG 2 cut(s) 173, 199
HspAI GCGC 1 cut(s) 51
KroI GCCGGC 1 cut(s) 131
KroNI GCCGGC 1 cut(s) 133
Ksp22I TGATCA 1 cut(s) 433
Kzo9I GATC 3 cut(s) 120, 226, 433
LpnPI CCDG 7 cut(s) 9, 53, 108, 145, 177, 266, 391
Lsp1109I GCAGC 4 cut(s) 194, 197, 364, 367
LweI GCATC 1 cut(s) 218
MaeII ACGT 1 cut(s) 217
MalI GATC 3 cut(s) 122, 228, 435
MboI GATC 3 cut(s) 120, 226, 433
MboII GAAGA 4 cut(s) 54, 115, 236, 405
MfeI CAATTG 1 cut(s) 260
MflI RGATCY 2 cut(s) 120, 226
MlsI TGGCCA 2 cut(s) 5, 299
MluCI AATT 4 cut(s) 32, 252, 260, 385
MluNI TGGCCA 2 cut(s) 5, 299
MmeI TCCRAC 1 cut(s) 35
MnlI CCTC 1 cut(s) 94
Mox20I TGGCCA 2 cut(s) 5, 299
MroNI GCCGGC 1 cut(s) 131
MscI TGGCCA 2 cut(s) 5, 299
Msp20I TGGCCA 2 cut(s) 5, 299
MspI CCGG 1 cut(s) 132
MunI CAATTG 1 cut(s) 260
MwoI GCNNNNNNNGC 1 cut(s) 317
NaeI GCCGGC 1 cut(s) 133
NdeII GATC 3 cut(s) 120, 226, 433
NgoMIV GCCGGC 1 cut(s) 131
NlaIII CATG 2 cut(s) 173, 199
NlaIV GGNNCC 2 cut(s) 72, 130
NspI RCATGY 1 cut(s) 199
PdiI GCCGGC 1 cut(s) 133
PfeI GAWTC 1 cut(s) 410
PflMI CCANNNNNTGG 1 cut(s) 236
PkrI GCNGC 4 cut(s) 184, 187, 354, 357
Ppu21I YACGTR 1 cut(s) 218
PspN4I GGNNCC 2 cut(s) 72, 130
PsuI RGATCY 2 cut(s) 120, 226
SatI GCNGC 4 cut(s) 183, 186, 353, 356
Sau3AI GATC 3 cut(s) 120, 226, 433
SetI ASST 4 cut(s) 28, 220, 313, 449
SfaNI GCATC 1 cut(s) 218
SfcI CTRYAG 1 cut(s) 152
SmlI CTYRAG 1 cut(s) 54
SmoI CTYRAG 1 cut(s) 54
Sse9I AATT 4 cut(s) 32, 252, 260, 385
TaiI ACGT 1 cut(s) 220
TasI AATT 4 cut(s) 32, 252, 260, 385
TfiI GAWTC 1 cut(s) 410
TseI GCWGC 4 cut(s) 182, 185, 352, 355
TspDTI ATGAA 2 cut(s) 104, 219
Van91I CCANNNNNTGG 1 cut(s) 236
XapI RAATTY 1 cut(s) 32
XceI RCATGY 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.