Prupe.3G033700_v2.0.a1

Activating signal cointegrator 1 complex subunit

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
2481316 .. 2483007
1692 bp
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UTR
Exon/CDS
Intron
Prupe.3G033700.1

Sequence Viewer

Length: 498 bp
ATGAAGACAATCGAAGCTTGCACTCGCAGAGGAATGTGGTGTGCGAGTGATATGAAGAGACAGAAGAAACGAACACAAAGCTTGCACTCGCAGTCCAATCTTCAAAATTCAAATACTTGGTCGCAAGGTCAGATGAACATCCAAGGCAGTTTCTTAGTATGCCAGAAGAAGCCCAACAGATGGTTCTTTAACCTGAAGCACACCTTGCAGTTTGGCATTGGATTACACCATGCCGGTCTGAATGACAAAGATAGATCTCTGGTTGAGGAGCTTTTTGCAAACAACAAGGTACTGGTTTGTACCAGAACATTGGCATGGGGTGTAAACATTCTAGGTCATCATCTGGTCATTATTAAGGTAAGGCAAAATTTGTGCAGTATCTTTTTCCTTTGGTTCCTATATTTACAAAGGTTTCTAGTAGGAGTATATTGCAGCAGCTGTTCTTCAGGAAAAATTTACCTAAGTGTTGATTCTCTTGCAAGGAACAGAATATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

166

Amino Acids

19.08

Weight (kDa)

10.06

Isoelectric Point (pI)

56.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0024565)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 180
AcsI RAATTY 3 cut(s) 106, 367, 453
AcuI CTGAAG 2 cut(s) 215, 429
AfaI GTAC 2 cut(s) 291, 301
AfiI CCNNNNNNNGG 1 cut(s) 180
AgsI TTSAA 2 cut(s) 104, 111
AjuI GAANNNNNNNTTGG 2 cut(s) 167, 199
AluBI AGCT 4 cut(s) 17, 81, 271, 438
AluI AGCT 4 cut(s) 17, 81, 271, 438
Alw26I GTCTC 1 cut(s) 52
AlwNI CAGNNNCTG 1 cut(s) 438
ApeKI GCWGC 2 cut(s) 432, 435
ApoI RAATTY 3 cut(s) 106, 367, 453
ArsI GACNNNNNNTTYG 2 cut(s) 104, 136
BbsI GAAGAC 1 cut(s) 11
BbvI GCAGC 2 cut(s) 444, 447
BccI CCATC 1 cut(s) 174
BcoDI GTCTC 1 cut(s) 52
BfaI CTAG 2 cut(s) 332, 416
BglII AGATCT 1 cut(s) 254
BisI GCNGC 2 cut(s) 433, 436
BlsI GCNGC 2 cut(s) 434, 437
BmiI GGNNCC 1 cut(s) 395
BpiI GAAGAC 1 cut(s) 11
BsaBI GATNNNNATC 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 142
Bsc4I CCNNNNNNNGG 1 cut(s) 180
Bse118I RCCGGY 1 cut(s) 233
Bse1I ACTGG 1 cut(s) 297
Bse8I GATNNNNATC 1 cut(s) 137
BseDI CCNNGG 1 cut(s) 142
BseGI GGATG 1 cut(s) 138
BseJI GATNNNNATC 1 cut(s) 137
BseLI CCNNNNNNNGG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 297
BseRI GAGGAG 1 cut(s) 281
BseXI GCAGC 2 cut(s) 444, 447
BsgI GTGCAG 1 cut(s) 394
BsiSI CCGG 1 cut(s) 234
BslI CCNNNNNNNGG 1 cut(s) 180
BsmAI GTCTC 1 cut(s) 52
Bsp143I GATC 1 cut(s) 254
BspLI GGNNCC 1 cut(s) 395
BsrFI RCCGGY 1 cut(s) 233
BsrI ACTGG 1 cut(s) 297
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 1 cut(s) 254
BssT1I CCWWGG 1 cut(s) 142
Bst6I CTCTTC 1 cut(s) 50
BstAPI GCANNNNNTGC 1 cut(s) 205
BstC8I GCNNGC 2 cut(s) 19, 83
BstDEI CTNAG 2 cut(s) 154, 461
BstF5I GGATG 1 cut(s) 138
BstKTI GATC 1 cut(s) 257
BstMAI GTCTC 1 cut(s) 52
BstMBI GATC 1 cut(s) 254
BstMWI GCNNNNNNNGC 1 cut(s) 205
BstV1I GCAGC 2 cut(s) 444, 447
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 254
BstXI CCANNNNNNTGG 1 cut(s) 310
BstYI RGATCY 1 cut(s) 254
BtsCI GGATG 1 cut(s) 138
Cac8I GCNNGC 2 cut(s) 19, 83
CaiI CAGNNNCTG 1 cut(s) 438
Cfr10I RCCGGY 1 cut(s) 233
Csp6I GTAC 2 cut(s) 290, 300
CviAII CATG 2 cut(s) 230, 315
CviJI RGCY 5 cut(s) 17, 81, 172, 271, 438
CviKI_1 RGCY 5 cut(s) 17, 81, 172, 271, 438
CviQI GTAC 2 cut(s) 290, 300
DdeI CTNAG 2 cut(s) 154, 461
DpnI GATC 1 cut(s) 256
DpnII GATC 1 cut(s) 254
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
Eco130I CCWWGG 1 cut(s) 142
Eco57I CTGAAG 2 cut(s) 215, 429
EcoT14I CCWWGG 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 142
FaeI CATG 2 cut(s) 233, 318
FaiI YATR 7 cut(s) 53, 160, 231, 316, 400, 427, 496
FalI AAGNNNNNCTT 2 cut(s) 188, 220
FatI CATG 2 cut(s) 229, 314
Fnu4HI GCNGC 2 cut(s) 433, 436
FokI GGATG 1 cut(s) 125
Fsp4HI GCNGC 2 cut(s) 433, 436
FspBI CTAG 2 cut(s) 332, 416
GluI GCNGC 2 cut(s) 433, 436
HapII CCGG 1 cut(s) 234
Hin1II CATG 2 cut(s) 233, 318
HindIII AAGCTT 2 cut(s) 15, 79
HinfI GANTC 1 cut(s) 470
HpaII CCGG 1 cut(s) 234
Hpy166II GTNNAC 1 cut(s) 325
Hpy188I TCNGA 2 cut(s) 132, 240
Hpy188III TCNNGA 1 cut(s) 447
Hpy8I GTNNAC 1 cut(s) 325
HpyCH4V TGCA 7 cut(s) 21, 85, 208, 278, 375, 432, 479
HpyF10VI GCNNNNNNNGC 1 cut(s) 205
HpyF3I CTNAG 2 cut(s) 154, 461
Hsp92II CATG 2 cut(s) 233, 318
Kzo9I GATC 1 cut(s) 254
LmnI GCTCC 1 cut(s) 268
LpnPI CCDG 8 cut(s) 176, 206, 245, 247, 278, 316, 329, 432
Lsp1109I GCAGC 2 cut(s) 444, 447
MaeI CTAG 2 cut(s) 332, 416
MalI GATC 1 cut(s) 256
MboI GATC 1 cut(s) 254
MboII GAAGA 6 cut(s) 16, 67, 76, 92, 178, 435
MflI RGATCY 1 cut(s) 254
MluCI AATT 3 cut(s) 106, 367, 453
MnlI CCTC 2 cut(s) 23, 259
MseI TTAA 2 cut(s) 189, 354
MslI CAYNNNNRTG 1 cut(s) 313
MspA1I CMGCKG 1 cut(s) 438
MspI CCGG 1 cut(s) 234
MwoI GCNNNNNNNGC 1 cut(s) 205
NdeII GATC 1 cut(s) 254
NlaIII CATG 2 cut(s) 233, 318
NlaIV GGNNCC 1 cut(s) 395
PfeI GAWTC 1 cut(s) 470
PflMI CCANNNNNTGG 1 cut(s) 180
PkrI GCNGC 2 cut(s) 434, 437
PspN4I GGNNCC 1 cut(s) 395
PstNI CAGNNNCTG 1 cut(s) 438
PsuI RGATCY 1 cut(s) 254
PvuII CAGCTG 1 cut(s) 438
RsaI GTAC 2 cut(s) 291, 301
RsaNI GTAC 2 cut(s) 290, 300
RseI CAYNNNNRTG 1 cut(s) 313
SaqAI TTAA 2 cut(s) 189, 354
SatI GCNGC 2 cut(s) 433, 436
Sau3AI GATC 1 cut(s) 254
SmiMI CAYNNNNRTG 1 cut(s) 313
Sse9I AATT 3 cut(s) 106, 367, 453
SspI AATATT 1 cut(s) 492
SspMI CTAG 2 cut(s) 332, 416
StyI CCWWGG 1 cut(s) 142
TaqI TCGA 1 cut(s) 12
TasI AATT 3 cut(s) 106, 367, 453
TfiI GAWTC 1 cut(s) 470
Tru1I TTAA 2 cut(s) 189, 354
Tru9I TTAA 2 cut(s) 189, 354
TseI GCWGC 2 cut(s) 432, 435
TspDTI ATGAA 3 cut(s) 17, 68, 149
Van91I CCANNNNNTGG 1 cut(s) 180
XapI RAATTY 3 cut(s) 106, 367, 453
XspI CTAG 2 cut(s) 332, 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.