Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0024565

Physical Location & Seq

Genomic Coordinates Reverse (-)

20702134 .. 20704857

Gene Structure 2724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G240300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCGAATGAGGATCTGGTTTCATGGAATGCAATACTATCAGGTTACTCTCAAGAGGGAAATCATGGGCTTGAGGCGATTTTTGTCTTTATTGAGATGGTGGGAGAAGGGATGGGGTTAGATAATGTCCCATTTACTAGTGCAGTTTCAGCTTGCGGCCATGAAATGAATTTAAAACTTGGCTTGACAATTAAATCAGGATATGAAAGTCATGTTTCAGTTTGTAATGTATTGATCTCGACATATTCAAAATGTGAGGTTACTGAAGATGCAAAATTAGTCTTGCAGTGCATGAATGATCGCAACGTAGTGTCTTGGACAACTATGATTTCAATAGACGAAGAAGATGTCATCTCTCTATTTAATGAGATGAGATTGGATGATGCACTAAAAACATTCTTGGTAGCAACTATGGAGTCGAAGCCAAACAATTACACATTTGGTAGTGTCTTGAGTGCAACTGTCCAATCTTCAAAATTCAAATACTCGGTCTTGAGCCTCTCTCTCAAGCTTGGATTTTTTTCTTCGATTTCGGCTGCTGCGTTGATTCGATTTTTCTTGTGCTTTTCTGCTATTGAAGTTACGTCAGATGAACATCCAAGGCAGTTTCTCAGTATGCCAGAAGAAGCCCAGCAGATGTTTGGCATTGGATTACACCATGCCGGTCTGAATGACAAAGATAGATCTCTGGTTGAGGAACAAGATTCAGGCATTTCTGTTTTACCTCACACATTGGCATGGGGTGTAAACCTTCCAGGTCATCATCTGGTCATTATTAAGGGAACAGAATATTATGATGGGAAAACAACGAGATATGTTGATTTATCAATATCAATCACAGATATATTGCAAATGATGGTTTTGATGTTTAATCCAGCTTACTATGGCTTGGACAATACTGAACCTGAGTTTGATATAAAGCGGATAAGGACCGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000960 GO:0000962 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010604 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903313 GO:1905637 GO:1905639

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

313

Amino Acids

34.65

Weight (kDa)

4.79

Isoelectric Point (pI)

34.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024565)

Species	Orthologous Gene IDs
prunus_persica	Prupe.3G033700_v2.0.a1 Prupe.7G141800_v2.0.a1 Prupe.7G240300_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	156, 922, 933
AclWI	GGATC	1 cut(s)	21
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	2 cut(s)	169, 476
AcuI	CTGAAG	1 cut(s)	285
AgsI	TTSAA	5 cut(s)	249, 333, 474, 481, 578
AhlI	ACTAGT	1 cut(s)	137
AjnI	CCWGG	1 cut(s)	754
AluBI	AGCT	3 cut(s)	152, 511, 878
AluI	AGCT	3 cut(s)	152, 511, 878
AlwI	GGATC	1 cut(s)	21
AoxI	GGCC	1 cut(s)	157
ApeKI	GCWGC	2 cut(s)	536, 539
ApoI	RAATTY	2 cut(s)	169, 476
ArsI	GACNNNNNNTTYG	4 cut(s)	333, 365, 474, 506
AspS9I	GGNCC	1 cut(s)	930
AvaII	GGWCC	1 cut(s)	930
BbvI	GCAGC	2 cut(s)	523, 526
BccI	CCATC	4 cut(s)	91, 106, 791, 850
BciT130I	CCWGG	1 cut(s)	756
BcuI	ACTAGT	1 cut(s)	137
BfaI	CTAG	1 cut(s)	138
BglII	AGATCT	1 cut(s)	683
BisI	GCNGC	3 cut(s)	157, 537, 540
BlsI	GCNGC	3 cut(s)	158, 538, 541
Bme1390I	CCNGG	1 cut(s)	756
Bme18I	GGWCC	1 cut(s)	930
BmgT120I	GGNCC	1 cut(s)	930
BmrFI	CCNGG	1 cut(s)	756
BmsI	GCATC	2 cut(s)	259, 373
BplI	GAGNNNNNCTC	2 cut(s)	487, 519
BpuEI	CTTGAG	5 cut(s)	36, 92, 472, 491, 514
BsaBI	GATNNNNATC	1 cut(s)	594
BsaJI	CCNNGG	1 cut(s)	599
Bse118I	RCCGGY	1 cut(s)	662
Bse8I	GATNNNNATC	1 cut(s)	594
BseBI	CCWGG	1 cut(s)	756
BseDI	CCNNGG	1 cut(s)	599
BseGI	GGATG	3 cut(s)	117, 385, 595
BseJI	GATNNNNATC	1 cut(s)	594
BseMII	CTCAG	2 cut(s)	625, 897
BseXI	GCAGC	2 cut(s)	523, 526
BseYI	CCCAGC	1 cut(s)	630
BsgI	GTGCAG	1 cut(s)	162
BshFI	GGCC	1 cut(s)	159
BsiSI	CCGG	1 cut(s)	663
BslFI	GGGAC	1 cut(s)	113
BsmFI	GGGAC	1 cut(s)	113
BsmI	GAATGC	1 cut(s)	34
BsnI	GGCC	1 cut(s)	159
Bsp143I	GATC	4 cut(s)	13, 234, 298, 683
BspACI	CCGC	3 cut(s)	156, 922, 933
BspANI	GGCC	1 cut(s)	159
BspCNI	CTCAG	2 cut(s)	624, 898
BspPI	GGATC	1 cut(s)	21
BsrFI	RCCGGY	1 cut(s)	662
BssAI	RCCGGY	1 cut(s)	662
BssECI	CCNNGG	1 cut(s)	599
BssMI	GATC	4 cut(s)	13, 234, 298, 683
BssT1I	CCWWGG	1 cut(s)	599
Bst2UI	CCWGG	1 cut(s)	756
Bst4CI	ACNGT	1 cut(s)	463
BstC8I	GCNNGC	1 cut(s)	154
BstDEI	CTNAG	3 cut(s)	611, 906, 936
BstF5I	GGATG	3 cut(s)	117, 385, 595
BstKTI	GATC	4 cut(s)	16, 237, 301, 686
BstMBI	GATC	4 cut(s)	13, 234, 298, 683
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstNI	CCWGG	1 cut(s)	756
BstSCI	CCNGG	1 cut(s)	754
BstV1I	GCAGC	2 cut(s)	523, 526
BstX2I	RGATCY	2 cut(s)	13, 683
BstYI	RGATCY	2 cut(s)	13, 683
BsuRI	GGCC	1 cut(s)	159
BtsCI	GGATG	3 cut(s)	117, 385, 595
BtsI	GCAGTG	1 cut(s)	293
BtsIMutI	CAGTG	1 cut(s)	293
Cac8I	GCNNGC	1 cut(s)	154
Cfr10I	RCCGGY	1 cut(s)	662
Cfr13I	GGNCC	1 cut(s)	930
CviAII	CATG	7 cut(s)	24, 65, 161, 212, 292, 659, 738
DdeI	CTNAG	3 cut(s)	611, 906, 936
DpnI	GATC	4 cut(s)	15, 236, 300, 685
DpnII	GATC	4 cut(s)	13, 234, 298, 683
DraI	TTTAAA	1 cut(s)	174
EaeI	YGGCCR	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	599
Eco47I	GGWCC	1 cut(s)	930
Eco57I	CTGAAG	1 cut(s)	285
EcoRII	CCWGG	1 cut(s)	754
EcoT14I	CCWWGG	1 cut(s)	599
ErhI	CCWWGG	1 cut(s)	599
FaeI	CATG	7 cut(s)	27, 68, 164, 215, 295, 662, 741
FalI	AAGNNNNNCTT	1 cut(s)	919
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	7 cut(s)	23, 64, 160, 211, 291, 658, 737
Fnu4HI	GCNGC	3 cut(s)	157, 537, 540
FokI	GGATG	3 cut(s)	124, 392, 582
Fsp4HI	GCNGC	3 cut(s)	157, 537, 540
FspBI	CTAG	1 cut(s)	138
GluI	GCNGC	3 cut(s)	157, 537, 540
GsaI	CCCAGC	1 cut(s)	634
HaeIII	GGCC	1 cut(s)	159
HapII	CCGG	1 cut(s)	663
Hin1II	CATG	7 cut(s)	27, 68, 164, 215, 295, 662, 741
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	3 cut(s)	416, 547, 704
HpaII	CCGG	1 cut(s)	663
Hpy166II	GTNNAC	1 cut(s)	748
Hpy188I	TCNGA	2 cut(s)	589, 669
Hpy188III	TCNNGA	5 cut(s)	53, 198, 238, 451, 493
Hpy8I	GTNNAC	1 cut(s)	748
HpyAV	CCTTC	2 cut(s)	101, 761
HpyCH4III	ACNGT	1 cut(s)	463
HpyCH4IV	ACGT	2 cut(s)	306, 584
HpyCH4V	TGCA	8 cut(s)	32, 143, 272, 286, 291, 386, 458, 850
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	3 cut(s)	611, 906, 936
HpySE526I	ACGT	2 cut(s)	306, 584
Hsp92II	CATG	7 cut(s)	27, 68, 164, 215, 295, 662, 741
Kzo9I	GATC	4 cut(s)	13, 234, 298, 683
Lsp1109I	GCAGC	2 cut(s)	523, 526
LweI	GCATC	2 cut(s)	259, 373
MaeI	CTAG	1 cut(s)	138
MaeII	ACGT	2 cut(s)	306, 584
MaeIII	GTNAC	3 cut(s)	44, 259, 580
MalI	GATC	4 cut(s)	15, 236, 300, 685
MboI	GATC	4 cut(s)	13, 234, 298, 683
MboII	GAAGA	6 cut(s)	278, 353, 356, 462, 516, 635
MflI	RGATCY	2 cut(s)	13, 683
MluCI	AATT	5 cut(s)	169, 189, 275, 430, 476
MlyI	GAGTC	1 cut(s)	425
MnlI	CCTC	7 cut(s)	4, 49, 67, 250, 509, 688, 735
MseI	TTAA	5 cut(s)	173, 192, 363, 777, 870
MslI	CAYNNNNRTG	1 cut(s)	736
MspI	CCGG	1 cut(s)	663
MspR9I	CCNGG	1 cut(s)	756
Mva1269I	GAATGC	1 cut(s)	34
MvaI	CCWGG	1 cut(s)	756
MwoI	GCNNNNNNNGC	1 cut(s)	149
NdeII	GATC	4 cut(s)	13, 234, 298, 683
NlaIII	CATG	7 cut(s)	27, 68, 164, 215, 295, 662, 741
PcsI	WCGNNNNNNNCGW	1 cut(s)	539
PctI	GAATGC	1 cut(s)	34
PfeI	GAWTC	2 cut(s)	547, 704
PkrI	GCNGC	3 cut(s)	158, 538, 541
PleI	GAGTC	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	424
Psp6I	CCWGG	1 cut(s)	754
PspFI	CCCAGC	1 cut(s)	630
PspGI	CCWGG	1 cut(s)	754
PspPI	GGNCC	1 cut(s)	930
PsuI	RGATCY	2 cut(s)	13, 683
RseI	CAYNNNNRTG	1 cut(s)	736
SaqAI	TTAA	5 cut(s)	173, 192, 363, 777, 870
SatI	GCNGC	3 cut(s)	157, 537, 540
Sau3AI	GATC	4 cut(s)	13, 234, 298, 683
Sau96I	GGNCC	1 cut(s)	930
SchI	GAGTC	1 cut(s)	425
ScrFI	CCNGG	1 cut(s)	756
SfaNI	GCATC	2 cut(s)	259, 373
SinI	GGWCC	1 cut(s)	930
SmiMI	CAYNNNNRTG	1 cut(s)	736
SmlI	CTYRAG	5 cut(s)	51, 71, 451, 493, 506
SmoI	CTYRAG	5 cut(s)	51, 71, 451, 493, 506
SpeI	ACTAGT	1 cut(s)	137
Sse9I	AATT	5 cut(s)	169, 189, 275, 430, 476
SsiI	CCGC	3 cut(s)	156, 922, 933
SspI	AATATT	1 cut(s)	791
SspMI	CTAG	1 cut(s)	138
StyD4I	CCNGG	1 cut(s)	754
StyI	CCWWGG	1 cut(s)	599
TaaI	ACNGT	1 cut(s)	463
TaiI	ACGT	2 cut(s)	309, 587
TaqI	TCGA	4 cut(s)	239, 419, 527, 550
TaqII	GACCGA	1 cut(s)	478
TasI	AATT	5 cut(s)	169, 189, 275, 430, 476
TauI	GCSGC	1 cut(s)	159
TfiI	GAWTC	2 cut(s)	547, 704
Tru1I	TTAA	5 cut(s)	173, 192, 363, 777, 870
Tru9I	TTAA	5 cut(s)	173, 192, 363, 777, 870
TscAI	CASTG	1 cut(s)	293
TseI	GCWGC	2 cut(s)	536, 539
TspDTI	ATGAA	6 cut(s)	12, 177, 182, 219, 308, 606
TspRI	CASTG	1 cut(s)	293
VpaK11BI	GGWCC	1 cut(s)	930
XapI	RAATTY	2 cut(s)	169, 476
XcmI	CCANNNNNNNNNTGG	1 cut(s)	638
XspI	CTAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.