Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0016011

Physical Location & Seq

Genomic Coordinates Reverse (-)

2983247 .. 2983663

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G041900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

TTCTGTGCTCTTCTTGTCGATTCTCAATCTCAAGATGTAGTGAATAATGTCTTATCGCCACCTGCCCTGCCACCTCCGGAATCTCCGACCCCGCCATCTCCACCAGATTCTTCGAATTCACCATCTCCACCGGACACTCCTGGCCCGCCACCACCTGATCGCCCCGCAAATCAGCTCAATTCCAAGAATGATCCGAAGAGTCTGCCACCTCCCTCACATAGGGGGCCAAGACCGACCAATTATCGCCGTCGGCATCCTCCACCGCCGCATCCTGGCCACAAGTACAATGCAGGGAAGAAGATTGGGCTGTTGTTTGTTGGTATCGCTGCCATTCTTCAGATTGGTGTGATTGGGTTCTTGGTTTTCAAGAGAAGGCAGCTGCTAATAGTGAAGGATAGATATGAGACTTGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

14.93

Weight (kDa)

9.86

Isoelectric Point (pI)

80.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72600 AT1G72600
fragaria_vesca	FvH4_6g34720
prunus_persica	Prupe.3G041900_v2.0.a1
pyrus_communis	pycom17g16170
rosa_chinensis	RchiOBHm_Chr2g0145371
rosa_laevigata	RLG00000020138
rosa_multiflora	Rmu_sc0001298.1_g000049
rosa_roxburghii	Rroxscaffold_2G00100750
rosa_rugosa	Rorug02G0391700
rosa_samantha	Rh2AG445000 Rh2BG455800 Rh2CG431800 Rh2DG465700
rosa_wichuraiana	Rw2G036340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	70
Acc36I	ACCTGC	1 cut(s)	70
AccIII	TCCGGA	1 cut(s)	76
AciI	CCGC	5 cut(s)	92, 146, 165, 263, 266
AclWI	GGATC	1 cut(s)	185
AcoI	YGGCCR	1 cut(s)	274
AcsI	RAATTY	1 cut(s)	115
AcuI	CTGAAG	1 cut(s)	320
AfaI	GTAC	1 cut(s)	284
AfiI	CCNNNNNNNGG	2 cut(s)	219, 272
AgsI	TTSAA	1 cut(s)	367
AjnI	CCWGG	2 cut(s)	139, 271
AluBI	AGCT	2 cut(s)	175, 379
AluI	AGCT	2 cut(s)	175, 379
Alw21I	GWGCWC	1 cut(s)	10
Alw26I	GTCTC	1 cut(s)	398
AlwI	GGATC	1 cut(s)	185
Aor13HI	TCCGGA	1 cut(s)	76
AoxI	GGCC	3 cut(s)	142, 224, 274
ApeKI	GCWGC	3 cut(s)	326, 376, 379
ApoI	RAATTY	1 cut(s)	115
AspS9I	GGNCC	2 cut(s)	143, 224
AsuHPI	GGTGA	1 cut(s)	111
AsuII	TTCGAA	1 cut(s)	113
BalI	TGGCCA	1 cut(s)	276
Bbv12I	GWGCWC	1 cut(s)	10
BbvI	GCAGC	3 cut(s)	313, 366, 388
BccI	CCATC	2 cut(s)	103, 130
BceAI	ACGGC	1 cut(s)	231
BcgI	CGANNNNNNTGC	2 cut(s)	184, 218
BciT130I	CCWGG	2 cut(s)	141, 273
BcoDI	GTCTC	1 cut(s)	398
BfuAI	ACCTGC	1 cut(s)	70
BisI	GCNGC	4 cut(s)	266, 327, 377, 380
BlsI	GCNGC	4 cut(s)	267, 328, 378, 381
Bme1390I	CCNGG	2 cut(s)	141, 273
BmgT120I	GGNCC	2 cut(s)	143, 224
BmiI	GGNNCC	1 cut(s)	225
BmrFI	CCNGG	2 cut(s)	141, 273
BmsI	GCATC	2 cut(s)	262, 277
Bpu14I	TTCGAA	1 cut(s)	113
BpuEI	CTTGAG	1 cut(s)	15
BsaWI	WCCGGW	2 cut(s)	76, 130
Bsc4I	CCNNNNNNNGG	2 cut(s)	219, 272
BseAI	TCCGGA	1 cut(s)	76
BseBI	CCWGG	2 cut(s)	141, 273
BseGI	GGATG	2 cut(s)	253, 268
BseLI	CCNNNNNNNGG	2 cut(s)	219, 272
BseXI	GCAGC	3 cut(s)	313, 366, 388
BshFI	GGCC	3 cut(s)	144, 226, 276
BsiHKAI	GWGCWC	1 cut(s)	10
BsiSI	CCGG	2 cut(s)	77, 131
BslI	CCNNNNNNNGG	2 cut(s)	219, 272
BsmAI	GTCTC	1 cut(s)	398
BsnI	GGCC	3 cut(s)	144, 226, 276
Bsp119I	TTCGAA	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp13I	TCCGGA	1 cut(s)	76
Bsp143I	GATC	2 cut(s)	157, 190
BspACI	CCGC	5 cut(s)	92, 146, 165, 263, 266
BspANI	GGCC	3 cut(s)	144, 226, 276
BspEI	TCCGGA	1 cut(s)	76
BspLI	GGNNCC	1 cut(s)	225
BspMI	ACCTGC	1 cut(s)	70
BspPI	GGATC	1 cut(s)	185
BspQI	GCTCTTC	1 cut(s)	15
BspT104I	TTCGAA	1 cut(s)	113
BssMI	GATC	2 cut(s)	157, 190
Bst2UI	CCWGG	2 cut(s)	141, 273
Bst6I	CTCTTC	2 cut(s)	15, 191
BstBI	TTCGAA	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	146
BstENI	CCTNNNNNAGG	1 cut(s)	217
BstF5I	GGATG	2 cut(s)	253, 268
BstKTI	GATC	2 cut(s)	160, 193
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	2 cut(s)	157, 190
BstNI	CCWGG	2 cut(s)	141, 273
BstSCI	CCNGG	2 cut(s)	139, 271
BstV1I	GCAGC	3 cut(s)	313, 366, 388
BsuRI	GGCC	3 cut(s)	144, 226, 276
BtsCI	GGATG	2 cut(s)	253, 268
BveI	ACCTGC	1 cut(s)	70
Cac8I	GCNNGC	1 cut(s)	146
Cfr13I	GGNCC	2 cut(s)	143, 224
Csp6I	GTAC	1 cut(s)	283
CviJI	RGCY	6 cut(s)	144, 175, 226, 276, 307, 379
CviKI_1	RGCY	6 cut(s)	144, 175, 226, 276, 307, 379
CviQI	GTAC	1 cut(s)	283
DpnI	GATC	2 cut(s)	159, 192
DpnII	GATC	2 cut(s)	157, 190
EaeI	YGGCCR	1 cut(s)	274
Eam1104I	CTCTTC	2 cut(s)	15, 191
EarI	CTCTTC	2 cut(s)	15, 191
Eco57I	CTGAAG	1 cut(s)	320
EcoNI	CCTNNNNNAGG	1 cut(s)	217
EcoRI	GAATTC	1 cut(s)	115
EcoRII	CCWGG	2 cut(s)	139, 271
FaiI	YATR	2 cut(s)	219, 402
FauI	CCCGC	3 cut(s)	99, 153, 172
Fnu4HI	GCNGC	4 cut(s)	266, 327, 377, 380
FokI	GGATG	2 cut(s)	240, 255
Fsp4HI	GCNGC	4 cut(s)	266, 327, 377, 380
GluI	GCNGC	4 cut(s)	266, 327, 377, 380
HaeIII	GGCC	3 cut(s)	144, 226, 276
HapII	CCGG	2 cut(s)	77, 131
HinfI	GANTC	4 cut(s)	20, 80, 107, 199
HpaII	CCGG	2 cut(s)	77, 131
HphI	GGTGA	1 cut(s)	111
Hpy188I	TCNGA	3 cut(s)	87, 195, 339
Hpy188III	TCNNGA	4 cut(s)	32, 77, 367, 414
Hpy99I	CGWCG	1 cut(s)	252
HpyAV	CCTTC	2 cut(s)	366, 385
HpyCH4V	TGCA	1 cut(s)	290
Kpn2I	TCCGGA	1 cut(s)	76
Kzo9I	GATC	2 cut(s)	157, 190
LguI	GCTCTTC	1 cut(s)	15
Lsp1109I	GCAGC	3 cut(s)	313, 366, 388
LweI	GCATC	2 cut(s)	262, 277
MalI	GATC	2 cut(s)	159, 192
MboI	GATC	2 cut(s)	157, 190
MboII	GAAGA	5 cut(s)	102, 208, 307, 310, 326
MhlI	GDGCHC	1 cut(s)	10
MlsI	TGGCCA	1 cut(s)	276
MluCI	AATT	3 cut(s)	115, 178, 238
MluNI	TGGCCA	1 cut(s)	276
MlyI	GAGTC	1 cut(s)	208
MmeI	TCCRAC	1 cut(s)	110
MnlI	CCTC	4 cut(s)	84, 219, 223, 267
Mox20I	TGGCCA	1 cut(s)	276
MroI	TCCGGA	1 cut(s)	76
MscI	TGGCCA	1 cut(s)	276
Msp20I	TGGCCA	1 cut(s)	276
MspA1I	CMGCKG	1 cut(s)	379
MspI	CCGG	2 cut(s)	77, 131
MspR9I	CCNGG	2 cut(s)	141, 273
MvaI	CCWGG	2 cut(s)	141, 273
NdeII	GATC	2 cut(s)	157, 190
NlaIV	GGNNCC	1 cut(s)	225
NspV	TTCGAA	1 cut(s)	113
PaqCI	CACCTGC	1 cut(s)	70
PciSI	GCTCTTC	1 cut(s)	15
PfeI	GAWTC	3 cut(s)	20, 80, 107
PkrI	GCNGC	4 cut(s)	267, 328, 378, 381
PleI	GAGTC	1 cut(s)	207
PpsI	GAGTC	1 cut(s)	207
Psp6I	CCWGG	2 cut(s)	139, 271
PspGI	CCWGG	2 cut(s)	139, 271
PspN4I	GGNNCC	1 cut(s)	225
PspPI	GGNCC	2 cut(s)	143, 224
PvuII	CAGCTG	1 cut(s)	379
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
SapI	GCTCTTC	1 cut(s)	15
SatI	GCNGC	4 cut(s)	266, 327, 377, 380
Sau3AI	GATC	2 cut(s)	157, 190
Sau96I	GGNCC	2 cut(s)	143, 224
SchI	GAGTC	1 cut(s)	208
ScrFI	CCNGG	2 cut(s)	141, 273
SduI	GDGCHC	1 cut(s)	10
SetI	ASST	6 cut(s)	64, 76, 157, 177, 211, 381
SfaNI	GCATC	2 cut(s)	262, 277
SfuI	TTCGAA	1 cut(s)	113
SmlI	CTYRAG	1 cut(s)	30
SmoI	CTYRAG	1 cut(s)	30
Sse9I	AATT	3 cut(s)	115, 178, 238
SsiI	CCGC	5 cut(s)	92, 146, 165, 263, 266
StyD4I	CCNGG	2 cut(s)	139, 271
TaqI	TCGA	2 cut(s)	18, 113
TaqII	GACCGA	1 cut(s)	247
TasI	AATT	3 cut(s)	115, 178, 238
TatI	WGTACW	1 cut(s)	282
TauI	GCSGC	1 cut(s)	268
TfiI	GAWTC	3 cut(s)	20, 80, 107
TseI	GCWGC	3 cut(s)	326, 376, 379
XagI	CCTNNNNNAGG	1 cut(s)	217
XapI	RAATTY	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.