Rroxscaffold_2G00100750

Leucine-rich repeat extensin-like protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0016011
Physical Location & Seq
Reverse (-)
22572002 .. 22573744
1743 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00100750.1

Sequence Viewer

Length: 519 bp
ATGGAACCGCCATTGTCAAGCTTGATCTTTGTGTTCATCATTAGCATATGTGCTCTTCTGGTTGATTCTCAATCTCAAAATGTCAACTCACTGCCTCCACCATCTCCACCACCTCCGCCGCCACCGTCACCATCTCCATCTCCATCTCCACCACCTCCACCGCCACCGCCACCGGAATCTTCAACCTCACCACGTCCGCCCCTATCGCAGACTCCACTACCTCCACCAGGCTCTTCCACAGCACCACCTCCGCAGGAATCTCAAAGTCCACCCCTGCCACCTGCTCGGCCCCCAAATCAGCGCAATTCCAATAATACACCATCGCGTGGCAGCCGGCACAACAAGCACCACCCGCCACCTCCACCGCCTCATAAGGGGCACAATTACAATGCAGGGAAGAAGGTTGGGCTCTTGTTTGCCGGTATTGCTGCCATTCTTCAGATTGGTGTAGTTGGGTTCTTGATTTTCAAAAGGAACCAGCTTCTGAAGGTCAGGGATAGATATGAGAATTGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

18.26

Weight (kDa)

10.22

Isoelectric Point (pI)

102.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016011)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G72600 AT1G72600
fragaria_vesca FvH4_6g34720
prunus_persica Prupe.3G041900_v2.0.a1
pyrus_communis pycom17g16170
rosa_chinensis RchiOBHm_Chr2g0145371
rosa_laevigata RLG00000020138
rosa_multiflora Rmu_sc0001298.1_g000049
rosa_roxburghii Rroxscaffold_2G00100750
rosa_rugosa Rorug02G0391700
rosa_samantha Rh2AG445000 Rh2BG455800 Rh2CG431800 Rh2DG465700
rosa_wichuraiana Rw2G036340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 289
Acc36I ACCTGC 1 cut(s) 289
AccB7I CCANNNNNTGG 1 cut(s) 326
AccII CGCG 1 cut(s) 325
AciI CCGC 9 cut(s) 8, 116, 119, 161, 167, 197, 251, 353, 365
AcuI CTGAAG 2 cut(s) 422, 506
AfiI CCNNNNNNNGG 3 cut(s) 227, 326, 374
AgsI TTSAA 2 cut(s) 183, 469
AjiI CACGTC 1 cut(s) 194
AjnI CCWGG 1 cut(s) 226
AluBI AGCT 2 cut(s) 21, 481
AluI AGCT 2 cut(s) 21, 481
Alw21I GWGCWC 1 cut(s) 55
AlwNI CAGNNNCTG 1 cut(s) 484
AoxI GGCC 1 cut(s) 287
ApeKI GCWGC 2 cut(s) 330, 428
AspLEI GCGC 1 cut(s) 303
AspS9I GGNCC 1 cut(s) 288
AsuHPI GGTGA 2 cut(s) 120, 180
BaeGI GKGCMC 1 cut(s) 381
BanII GRGCYC 1 cut(s) 411
Bbv12I GWGCWC 1 cut(s) 55
BbvI GCAGC 2 cut(s) 342, 415
BccI CCATC 5 cut(s) 109, 139, 145, 151, 328
BciT130I CCWGG 1 cut(s) 228
BfuAI ACCTGC 1 cut(s) 289
BisI GCNGC 3 cut(s) 119, 331, 429
BlsI GCNGC 3 cut(s) 120, 332, 430
Bme1390I CCNGG 1 cut(s) 228
BmgBI CACGTC 1 cut(s) 194
BmgT120I GGNCC 1 cut(s) 288
BmiI GGNNCC 3 cut(s) 6, 290, 476
BmrFI CCNGG 1 cut(s) 228
BsaWI WCCGGW 1 cut(s) 172
Bsc4I CCNNNNNNNGG 3 cut(s) 227, 326, 374
Bse118I RCCGGY 2 cut(s) 333, 419
BseBI CCWGG 1 cut(s) 228
BseLI CCNNNNNNNGG 3 cut(s) 227, 326, 374
BseSI GKGCMC 1 cut(s) 381
BseXI GCAGC 2 cut(s) 342, 415
Bsh1236I CGCG 1 cut(s) 325
BshFI GGCC 1 cut(s) 289
BsiHKAI GWGCWC 1 cut(s) 55
BsiSI CCGG 3 cut(s) 173, 334, 420
BslI CCNNNNNNNGG 3 cut(s) 227, 326, 374
BsnI GGCC 1 cut(s) 289
Bsp1286I GDGCHC 3 cut(s) 55, 381, 411
Bsp143I GATC 1 cut(s) 24
BspACI CCGC 9 cut(s) 8, 116, 119, 161, 167, 197, 251, 353, 365
BspANI GGCC 1 cut(s) 289
BspFNI CGCG 1 cut(s) 325
BspLI GGNNCC 3 cut(s) 6, 290, 476
BspMI ACCTGC 1 cut(s) 289
BspQI GCTCTTC 2 cut(s) 60, 238
BsrFI RCCGGY 2 cut(s) 333, 419
BssAI RCCGGY 2 cut(s) 333, 419
BssMI GATC 1 cut(s) 24
Bst2UI CCWGG 1 cut(s) 228
Bst4CI ACNGT 1 cut(s) 126
Bst6I CTCTTC 2 cut(s) 60, 238
BstC8I GCNNGC 1 cut(s) 335
BstENI CCTNNNNNAGG 1 cut(s) 225
BstFNI CGCG 1 cut(s) 325
BstHHI GCGC 1 cut(s) 303
BstKTI GATC 1 cut(s) 27
BstMBI GATC 1 cut(s) 24
BstMWI GCNNNNNNNGC 4 cut(s) 205, 343, 352, 425
BstNI CCWGG 1 cut(s) 228
BstSCI CCNGG 1 cut(s) 226
BstSLI GKGCMC 1 cut(s) 381
BstUI CGCG 1 cut(s) 325
BstV1I GCAGC 2 cut(s) 342, 415
BsuRI GGCC 1 cut(s) 289
BtgZI GCGATG 1 cut(s) 306
BtrI CACGTC 1 cut(s) 194
BtsI GCAGTG 1 cut(s) 89
BtsIMutI CAGTG 1 cut(s) 89
BveI ACCTGC 1 cut(s) 289
Cac8I GCNNGC 1 cut(s) 335
CaiI CAGNNNCTG 1 cut(s) 484
CfoI GCGC 1 cut(s) 303
Cfr10I RCCGGY 2 cut(s) 333, 419
Cfr13I GGNCC 1 cut(s) 288
CviJI RGCY 6 cut(s) 21, 231, 289, 333, 409, 481
CviKI_1 RGCY 6 cut(s) 21, 231, 289, 333, 409, 481
DpnI GATC 1 cut(s) 26
DpnII GATC 1 cut(s) 24
Eam1104I CTCTTC 2 cut(s) 60, 238
EarI CTCTTC 2 cut(s) 60, 238
EciI GGCGGA 2 cut(s) 105, 186
Eco24I GRGCYC 1 cut(s) 411
Eco57I CTGAAG 2 cut(s) 422, 506
EcoNI CCTNNNNNAGG 1 cut(s) 225
EcoRII CCWGG 1 cut(s) 226
EcoT38I GRGCYC 1 cut(s) 411
FaiI YATR 4 cut(s) 47, 49, 372, 504
FauI CCCGC 1 cut(s) 360
FauNDI CATATG 1 cut(s) 47
Fnu4HI GCNGC 3 cut(s) 119, 331, 429
FriOI GRGCYC 1 cut(s) 411
Fsp4HI GCNGC 3 cut(s) 119, 331, 429
GlaI GCGC 1 cut(s) 302
GluI GCNGC 3 cut(s) 119, 331, 429
HaeIII GGCC 1 cut(s) 289
HapII CCGG 3 cut(s) 173, 334, 420
HhaI GCGC 1 cut(s) 303
Hin6I GCGC 1 cut(s) 301
HinP1I GCGC 1 cut(s) 301
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HindIII AAGCTT 1 cut(s) 19
HinfI GANTC 4 cut(s) 65, 176, 211, 257
HpaII CCGG 3 cut(s) 173, 334, 420
HphI GGTGA 2 cut(s) 120, 180
Hpy166II GTNNAC 2 cut(s) 85, 269
Hpy188I TCNGA 2 cut(s) 441, 486
Hpy188III TCNNGA 2 cut(s) 460, 516
Hpy8I GTNNAC 2 cut(s) 85, 269
HpyAV CCTTC 2 cut(s) 394, 481
HpyCH4III ACNGT 1 cut(s) 126
HpyCH4IV ACGT 1 cut(s) 193
HpyCH4V TGCA 1 cut(s) 392
HpyF10VI GCNNNNNNNGC 4 cut(s) 205, 343, 352, 425
HpySE526I ACGT 1 cut(s) 193
HspAI GCGC 1 cut(s) 301
KroI GCCGGC 1 cut(s) 333
KroNI GCCGGC 1 cut(s) 335
Kzo9I GATC 1 cut(s) 24
LguI GCTCTTC 2 cut(s) 60, 238
Lsp1109I GCAGC 2 cut(s) 342, 415
MaeII ACGT 1 cut(s) 193
MaeIII GTNAC 1 cut(s) 126
MalI GATC 1 cut(s) 26
MboI GATC 1 cut(s) 24
MboII GAAGA 5 cut(s) 47, 171, 225, 409, 428
MhlI GDGCHC 3 cut(s) 55, 381, 411
MluCI AATT 3 cut(s) 304, 382, 508
MlyI GAGTC 1 cut(s) 205
MnlI CCTC 8 cut(s) 105, 123, 165, 196, 231, 258, 369, 378
MroNI GCCGGC 1 cut(s) 333
MspI CCGG 3 cut(s) 173, 334, 420
MspR9I CCNGG 1 cut(s) 228
MvaI CCWGG 1 cut(s) 228
MvnI CGCG 1 cut(s) 325
MwoI GCNNNNNNNGC 4 cut(s) 205, 343, 352, 425
NaeI GCCGGC 1 cut(s) 335
NdeI CATATG 1 cut(s) 47
NdeII GATC 1 cut(s) 24
NgoMIV GCCGGC 1 cut(s) 333
NlaIV GGNNCC 3 cut(s) 6, 290, 476
NmeAIII GCCGAG 1 cut(s) 265
NmuCI GTSAC 1 cut(s) 126
PaqCI CACCTGC 1 cut(s) 289
PciSI GCTCTTC 2 cut(s) 60, 238
PdiI GCCGGC 1 cut(s) 335
PfeI GAWTC 3 cut(s) 65, 176, 257
PflMI CCANNNNNTGG 1 cut(s) 326
PkrI GCNGC 3 cut(s) 120, 332, 430
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
PspN4I GGNNCC 3 cut(s) 6, 290, 476
PspPI GGNCC 1 cut(s) 288
PstNI CAGNNNCTG 1 cut(s) 484
SapI GCTCTTC 2 cut(s) 60, 238
SatI GCNGC 3 cut(s) 119, 331, 429
Sau3AI GATC 1 cut(s) 24
Sau96I GGNCC 1 cut(s) 288
SchI GAGTC 1 cut(s) 205
ScrFI CCNGG 1 cut(s) 228
SduI GDGCHC 3 cut(s) 55, 381, 411
Sse9I AATT 3 cut(s) 304, 382, 508
SsiI CCGC 9 cut(s) 8, 116, 119, 161, 167, 197, 251, 353, 365
StyD4I CCNGG 1 cut(s) 226
TaaI ACNGT 1 cut(s) 126
TaiI ACGT 1 cut(s) 196
TasI AATT 3 cut(s) 304, 382, 508
TauI GCSGC 1 cut(s) 121
TfiI GAWTC 3 cut(s) 65, 176, 257
TscAI CASTG 1 cut(s) 96
TseFI GTSAC 1 cut(s) 126
TseI GCWGC 2 cut(s) 330, 428
Tsp45I GTSAC 1 cut(s) 126
TspDTI ATGAA 1 cut(s) 25
TspRI CASTG 1 cut(s) 96
Van91I CCANNNNNTGG 1 cut(s) 326
XagI CCTNNNNNAGG 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.