Prupe.3G049300_v2.0.a1
TCP Family

Belongs to the chaperonin (HSP60) family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
3466939 .. 3473493
6555 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G049300.1

Sequence Viewer

Length: 1725 bp
ATGTATCGAATAGCTTCAAAATCAGCGTCTTCCGTCGCTTCTTCTACTTCCAGGAAATTGGTATGTAGTAGGGTTATATGTAATAGGAATTATGTGGCAAAAGATATCAGTTTCGGGGTTGGGGCTCGCGCCGCTTTGTTGCAAGGTGTCTCAGAGGTGGCAGAGGCTGTCAAAGTTACAATGGGACCAAAGGGTCGATATGTGATAATTGAGAACAGTCACAAGGATCCAAAGGTCACAAAGGATGGTGTTACTGTTGCGAAAAGCATTAGTTTCAAGGGAAAGTACAAGAATGTGGGTGCCGATCTTGTGAAGCAGGTTGCTAAAGCTACTAATACTGCTGCAGGAGACGGTACGACTTGTGCAACTGTCCTGACCCAAGCAATACTCACAGAAGGTTGCAAGTCAATAGCTGCTGGGGTAAATGCAATGGATTTGCGCATTGGTATCAATATGGCAGTTGATGCTGTTGTTTCTGATCTGAAAAGCAGAGCATTGATGATAAGCACACCAGACGAGATTACACAGGTTGCTACTATTTCTGCAAATGGTGAACGAGAGATTGGAGAGCTGATAGCAAGAGCAATGGAGAAAGTGGGGAAGGAAGGAGTCATTACTGTTGCCGATGGGAATACTTTGGATAATGAATTGGAAGTGGTGGAAGGGATGAAGCTAGGCAGAGGCTACATTTCTCCTTACTTTATCACTGACCAAAAGACTCAGAAATGTGAACTGGAAAACCCACTGATCCTCATTTATGAAAAGAAAATTTCGGACCTGAATTCACTTGTGAAAATACTAGAGCTGGCAGTAAATAAACTTAGACCACTTCTTATTGTGGCCGAGGATGTCGAAGGTGATCCACTTGCTATGCTAATACTCAACAAACATCATGCTGGGGTTAAGGTTTGTGCTATCAAAGCTCCTGGTTTTGGGGAAAACAGGAAAGCTAATTTAGACGATCTCGCCGTTCTTACTGGGGGCGAGGTTATCACCGAAGATCGTGGTTTAACTCTCGACAAAGTCCAGTTTGAAATGCTTGGTACTGCAAAAAAGGTGACTGTCTCTCTTGACGACACCATCATTCTACATGGAGGTGGGGATAAGAAACAGATTGAAGAAAGATGTGAGGAGTTGAGAACAGCAATGGAGAAGAGTACCGCCATGTTTGACAAGGAGAAAGCACAGGAGCGGCTGTCAAAGCTATCTGGTGGAGTTGCTGTTTTCAAGGTTGGAGGGGTTAGTGAGGCAGAAGTCGGGGAAAGGAAAGATAGGGTAACAGATGCTTTAAATGCTACAAGAGCAGCTGTGGAAGAGGGTATTGTGCCAGGTGGTGGTGTTGCTCTCTTGTATGCTACAAAAGCTTTGGATAACCTTCAAGTGCAAAATGAAGACCAAAGAAGAGGAGTACAAATAATCCAGAATGCTCTAAAGGCACCTACGTTCACTATAGTTTCAAATGCTGGTTTTGATGGTCCACTGGTTCTTGGTAAATTGTTGGAACAAGATGATCCTAAATTGGGTTATGATGCGGCTAAAGGGGAATACGTTGACATGGTGAAGGCTGGAATCATAGATCCTCTGAAAGTCATTAGAACCGCCTTGATAGACGCTGCCAGTGTTTCGTTGCTGTTGACTACAACTGAGGCAGCTGTGGTGGACAAACCAAATGAGAAAAAACCTCCCAGCCATGTGCCAAATATGGATGCTTTGGGAGGCTACTAA

Protein Analysis

575

Amino Acids

61.14

Weight (kDa)

6.14

Isoelectric Point (pI)

18.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13860
fragaria_vesca FvH4_6g33450
malus_domestica MD09G1192900.v1.1
prunus_persica Prupe.3G049300_v2.0.a1
pyrus_communis pycom09g10940
rosa_chinensis RchiOBHm_Chr2g0143341
rosa_laevigata RLG00000020029
rosa_multiflora Rmu_sc0003507.1_g000015
rosa_roxburghii Rroxscaffold_2G00101960
rosa_rugosa Rorug02G0380700
rosa_samantha Rh2DG451700
rosa_wichuraiana Rw2G035350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 192
Acc16I TGCGCA 1 cut(s) 440
Acc36I ACCTGC 1 cut(s) 307
AccB1I GGYRCC 2 cut(s) 299, 1435
AccB7I CCANNNNNTGG 1 cut(s) 1334
AccBSI CCGCTC 1 cut(s) 1192
AccII CGCG 1 cut(s) 129
AciI CCGC 5 cut(s) 132, 1161, 1192, 1532, 1599
AclWI GGATC 6 cut(s) 221, 234, 742, 854, 1505, 1571
AcoI YGGCCR 1 cut(s) 840
AcsI RAATTY 2 cut(s) 768, 781
AfaI GTAC 5 cut(s) 287, 355, 1045, 1159, 1410
AfiI CCNNNNNNNGG 3 cut(s) 932, 1334, 1520
AgsI TTSAA 7 cut(s) 18, 277, 1034, 1118, 1228, 1379, 1458
AjnI CCWGG 3 cut(s) 50, 925, 1327
AjuI GAANNNNNNNTTGG 2 cut(s) 546, 578
Alw26I GTCTC 3 cut(s) 154, 342, 1069
AlwI GGATC 6 cut(s) 221, 234, 742, 854, 1505, 1571
AlwNI CAGNNNCTG 1 cut(s) 167
AoxI GGCC 1 cut(s) 840
ApeKI GCWGC 5 cut(s) 341, 413, 1304, 1613, 1649
ApoI RAATTY 2 cut(s) 768, 781
ArsI GACNNNNNNTTYG 2 cut(s) 11, 43
Asp700I GAANNNNTTC 1 cut(s) 13
AspLEI GCGC 2 cut(s) 131, 441
AspS9I GGNCC 3 cut(s) 185, 775, 1475
AsuHPI GGTGA 5 cut(s) 563, 869, 985, 1069, 1570
AvaII GGWCC 3 cut(s) 185, 775, 1475
BamHI GGATCC 1 cut(s) 226
BanI GGYRCC 2 cut(s) 299, 1435
BanII GRGCYC 1 cut(s) 127
BbsI GAAGAC 2 cut(s) 21, 1398
BbvI GCAGC 5 cut(s) 328, 400, 1316, 1600, 1661
BccI CCATC 4 cut(s) 239, 620, 1088, 1466
BceAI ACGGC 1 cut(s) 953
BciT130I CCWGG 3 cut(s) 52, 927, 1329
BcoDI GTCTC 3 cut(s) 154, 342, 1069
BfaI CTAG 2 cut(s) 674, 800
BfmI CTRYAG 2 cut(s) 342, 1449
BfuAI ACCTGC 1 cut(s) 307
BisI GCNGC 8 cut(s) 132, 342, 414, 1193, 1305, 1533, 1614, 1650
BlsI GCNGC 8 cut(s) 133, 343, 415, 1194, 1306, 1534, 1615, 1651
Bme1390I CCNGG 3 cut(s) 52, 927, 1329
Bme18I GGWCC 3 cut(s) 185, 775, 1475
BmgT120I GGNCC 3 cut(s) 185, 775, 1475
BmiI GGNNCC 4 cut(s) 186, 228, 301, 1437
BmrFI CCNGG 3 cut(s) 52, 927, 1329
BmrI ACTGGG 1 cut(s) 987
BmsI GCATC 4 cut(s) 454, 1273, 1519, 1696
BmuI ACTGGG 1 cut(s) 987
BpiI GAAGAC 2 cut(s) 21, 1398
BsaJI CCNNGG 1 cut(s) 843
BsaXI ACNNNNNCTCC 4 cut(s) 1181, 1206, 1211, 1236
Bsc4I CCNNNNNNNGG 3 cut(s) 932, 1334, 1520
Bse1I ACTGG 5 cut(s) 738, 982, 1027, 1485, 1617
Bse3DI GCAATG 3 cut(s) 435, 591, 1152
BseBI CCWGG 3 cut(s) 52, 927, 1329
BseDI CCNNGG 1 cut(s) 843
BseGI GGATG 4 cut(s) 250, 672, 853, 1711
BseLI CCNNNNNNNGG 3 cut(s) 932, 1334, 1520
BseMI GCAATG 3 cut(s) 435, 591, 1152
BseMII CTCAG 3 cut(s) 165, 734, 1635
BseNI ACTGG 5 cut(s) 738, 982, 1027, 1485, 1617
BseRI GAGGAG 2 cut(s) 1145, 1419
BseXI GCAGC 5 cut(s) 328, 400, 1316, 1600, 1661
BseYI CCCAGC 3 cut(s) 416, 896, 1685
Bsh1236I CGCG 1 cut(s) 129
BshFI GGCC 1 cut(s) 842
BshNI GGYRCC 2 cut(s) 299, 1435
BslFI GGGAC 1 cut(s) 198
BslI CCNNNNNNNGG 3 cut(s) 932, 1334, 1520
BsmAI GTCTC 3 cut(s) 154, 342, 1069
BsmBI CGTCTC 1 cut(s) 342
BsmFI GGGAC 1 cut(s) 198
BsmI GAATGC 1 cut(s) 1429
BsnI GGCC 1 cut(s) 842
Bsp1286I GDGCHC 1 cut(s) 127
Bsp143I GATC 9 cut(s) 226, 304, 478, 747, 859, 961, 1000, 1510, 1576
BspACI CCGC 5 cut(s) 132, 1161, 1192, 1532, 1599
BspANI GGCC 1 cut(s) 842
BspCNI CTCAG 3 cut(s) 164, 733, 1636
BspFNI CGCG 1 cut(s) 129
BspLI GGNNCC 4 cut(s) 186, 228, 301, 1437
BspMAI CTGCAG 1 cut(s) 346
BspMI ACCTGC 1 cut(s) 307
BspPI GGATC 6 cut(s) 221, 234, 742, 854, 1505, 1571
BspT107I GGYRCC 2 cut(s) 299, 1435
BsrBI CCGCTC 1 cut(s) 1192
BsrDI GCAATG 3 cut(s) 435, 591, 1152
BsrI ACTGG 5 cut(s) 738, 982, 1027, 1485, 1617
BssECI CCNNGG 1 cut(s) 843
BssMI GATC 9 cut(s) 226, 304, 478, 747, 859, 961, 1000, 1510, 1576
Bst2UI CCWGG 3 cut(s) 52, 927, 1329
Bst4CI ACNGT 6 cut(s) 218, 256, 353, 370, 619, 1063
Bst6I CTCTTC 3 cut(s) 1148, 1308, 1396
BstAPI GCANNNNNTGC 1 cut(s) 464
BstC8I GCNNGC 2 cut(s) 127, 807
BstDEI CTNAG 4 cut(s) 151, 720, 821, 1644
BstF5I GGATG 4 cut(s) 250, 672, 853, 1711
BstFNI CGCG 1 cut(s) 129
BstHHI GCGC 2 cut(s) 131, 441
BstKTI GATC 9 cut(s) 229, 307, 481, 750, 862, 964, 1003, 1513, 1579
BstMAI GTCTC 3 cut(s) 154, 342, 1069
BstMBI GATC 9 cut(s) 226, 304, 478, 747, 859, 961, 1000, 1510, 1576
BstMWI GCNNNNNNNGC 8 cut(s) 131, 464, 920, 1201, 1292, 1301, 1361, 1433
BstNI CCWGG 3 cut(s) 52, 927, 1329
BstSCI CCNGG 3 cut(s) 50, 925, 1327
BstSFI CTRYAG 2 cut(s) 342, 1449
BstUI CGCG 1 cut(s) 129
BstV1I GCAGC 5 cut(s) 328, 400, 1316, 1600, 1661
BstV2I GAAGAC 2 cut(s) 21, 1398
BstX2I RGATCY 2 cut(s) 226, 1576
BstXI CCANNNNNNTGG 1 cut(s) 58
BstYI RGATCY 2 cut(s) 226, 1576
BsuRI GGCC 1 cut(s) 842
BtsCI GGATG 4 cut(s) 250, 672, 853, 1711
BtsIMutI CAGTG 4 cut(s) 705, 743, 1478, 1624
BveI ACCTGC 1 cut(s) 307
Cac8I GCNNGC 2 cut(s) 127, 807
CaiI CAGNNNCTG 1 cut(s) 167
CfoI GCGC 2 cut(s) 131, 441
Cfr13I GGNCC 3 cut(s) 185, 775, 1475
CseI GACGC 2 cut(s) 15, 1619
Csp6I GTAC 5 cut(s) 286, 354, 1044, 1158, 1409
CviAII CATG 5 cut(s) 893, 1091, 1165, 1555, 1691
CviQI GTAC 5 cut(s) 286, 354, 1044, 1158, 1409
DdeI CTNAG 4 cut(s) 151, 720, 821, 1644
DpnI GATC 9 cut(s) 228, 306, 480, 749, 861, 963, 1002, 1512, 1578
DpnII GATC 9 cut(s) 226, 304, 478, 747, 859, 961, 1000, 1510, 1576
DraI TTTAAA 1 cut(s) 1290
DrdI GACNNNNNNGTC 1 cut(s) 192
DseDI GACNNNNNNGTC 1 cut(s) 192
EaeI YGGCCR 1 cut(s) 840
Eam1104I CTCTTC 3 cut(s) 1148, 1308, 1396
EarI CTCTTC 3 cut(s) 1148, 1308, 1396
Eco24I GRGCYC 1 cut(s) 127
Eco32I GATATC 1 cut(s) 106
Eco47I GGWCC 3 cut(s) 185, 775, 1475
EcoRI GAATTC 1 cut(s) 781
EcoRII CCWGG 3 cut(s) 50, 925, 1327
EcoRV GATATC 1 cut(s) 106
EcoT38I GRGCYC 1 cut(s) 127
Esp3I CGTCTC 1 cut(s) 342
FaeI CATG 5 cut(s) 896, 1094, 1168, 1558, 1694
FaqI GGGAC 1 cut(s) 198
FatI CATG 5 cut(s) 892, 1090, 1164, 1554, 1690
Fnu4HI GCNGC 8 cut(s) 132, 342, 414, 1193, 1305, 1533, 1614, 1650
FokI GGATG 4 cut(s) 257, 679, 860, 1718
FriOI GRGCYC 1 cut(s) 127
Fsp4HI GCNGC 8 cut(s) 132, 342, 414, 1193, 1305, 1533, 1614, 1650
FspBI CTAG 2 cut(s) 674, 800
FspI TGCGCA 1 cut(s) 440
GlaI GCGC 2 cut(s) 130, 440
GluI GCNGC 8 cut(s) 132, 342, 414, 1193, 1305, 1533, 1614, 1650
GsaI CCCAGC 3 cut(s) 420, 900, 1689
HaeIII GGCC 1 cut(s) 842
HgaI GACGC 2 cut(s) 15, 1619
HhaI GCGC 2 cut(s) 131, 441
Hin1II CATG 5 cut(s) 896, 1094, 1168, 1558, 1694
Hin6I GCGC 2 cut(s) 129, 439
HinP1I GCGC 2 cut(s) 129, 439
HincII GTYRAC 2 cut(s) 1552, 1635
HindII GTYRAC 2 cut(s) 1552, 1635
HindIII AAGCTT 1 cut(s) 1362
HinfI GANTC 3 cut(s) 609, 718, 1569
HphI GGTGA 5 cut(s) 563, 869, 985, 1069, 1570
Hpy166II GTNNAC 7 cut(s) 554, 731, 1446, 1478, 1552, 1635, 1660
Hpy188I TCNGA 6 cut(s) 154, 478, 483, 723, 775, 1584
Hpy188III TCNNGA 4 cut(s) 373, 1016, 1070, 1420
Hpy8I GTNNAC 7 cut(s) 554, 731, 1446, 1478, 1552, 1635, 1660
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 7 cut(s) 389, 595, 599, 656, 848, 1385, 1555
HpyCH4III ACNGT 6 cut(s) 218, 256, 353, 370, 619, 1063
HpyCH4IV ACGT 2 cut(s) 1442, 1548
HpyCH4V TGCA 8 cut(s) 142, 344, 365, 402, 428, 545, 1049, 1384
HpyF10VI GCNNNNNNNGC 8 cut(s) 131, 464, 920, 1201, 1292, 1301, 1361, 1433
HpyF3I CTNAG 4 cut(s) 151, 720, 821, 1644
HpySE526I ACGT 2 cut(s) 1442, 1548
Hsp92II CATG 5 cut(s) 896, 1094, 1168, 1558, 1694
HspAI GCGC 2 cut(s) 129, 439
Kzo9I GATC 9 cut(s) 226, 304, 478, 747, 859, 961, 1000, 1510, 1576
LmnI GCTCC 2 cut(s) 928, 1189
Lsp1109I GCAGC 5 cut(s) 328, 400, 1316, 1600, 1661
LweI GCATC 4 cut(s) 454, 1273, 1519, 1696
MaeI CTAG 2 cut(s) 674, 800
MaeII ACGT 2 cut(s) 1442, 1548
MaeIII GTNAC 6 cut(s) 175, 218, 235, 250, 1057, 1276
MalI GATC 9 cut(s) 228, 306, 480, 749, 861, 963, 1002, 1512, 1578
MbiI CCGCTC 1 cut(s) 1192
MboI GATC 9 cut(s) 226, 304, 478, 747, 859, 961, 1000, 1510, 1576
MboII GAAGA 8 cut(s) 21, 33, 1010, 1130, 1165, 1325, 1403, 1413
MflI RGATCY 2 cut(s) 226, 1576
MhlI GDGCHC 1 cut(s) 127
MluCI AATT 9 cut(s) 56, 88, 207, 647, 768, 781, 952, 1493, 1517
MlyI GAGTC 2 cut(s) 618, 712
MmeI TCCRAC 2 cut(s) 1213, 1479
MroXI GAANNNNTTC 1 cut(s) 13
MseI TTAA 3 cut(s) 903, 1010, 1289
MslI CAYNNNNRTG 1 cut(s) 1095
MspA1I CMGCKG 2 cut(s) 1307, 1652
MspR9I CCNGG 3 cut(s) 52, 927, 1329
Mva1269I GAATGC 1 cut(s) 1429
MvaI CCWGG 3 cut(s) 52, 927, 1329
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 8 cut(s) 131, 464, 920, 1201, 1292, 1301, 1361, 1433
NdeII GATC 9 cut(s) 226, 304, 478, 747, 859, 961, 1000, 1510, 1576
NlaIII CATG 5 cut(s) 896, 1094, 1168, 1558, 1694
NlaIV GGNNCC 4 cut(s) 186, 228, 301, 1437
NmeAIII GCCGAG 1 cut(s) 868
NmuCI GTSAC 3 cut(s) 218, 235, 1057
NsbI TGCGCA 1 cut(s) 440
PcsI WCGNNNNNNNCGW 1 cut(s) 966
PctI GAATGC 1 cut(s) 1429
PdmI GAANNNNTTC 1 cut(s) 13
PfeI GAWTC 1 cut(s) 1569
PflFI GACNNNGTC 1 cut(s) 1022
PflMI CCANNNNNTGG 1 cut(s) 1334
PfoI TCCNGGA 1 cut(s) 50
PkrI GCNGC 8 cut(s) 133, 343, 415, 1194, 1306, 1534, 1615, 1651
PleI GAGTC 2 cut(s) 617, 712
PpsI GAGTC 2 cut(s) 617, 712
Psp6I CCWGG 3 cut(s) 50, 925, 1327
PspFI CCCAGC 3 cut(s) 416, 896, 1685
PspGI CCWGG 3 cut(s) 50, 925, 1327
PspN4I GGNNCC 4 cut(s) 186, 228, 301, 1437
PspPI GGNCC 3 cut(s) 185, 775, 1475
PstI CTGCAG 1 cut(s) 346
PstNI CAGNNNCTG 1 cut(s) 167
PsuI RGATCY 2 cut(s) 226, 1576
PsyI GACNNNGTC 1 cut(s) 1022
PvuII CAGCTG 2 cut(s) 1307, 1652
RsaI GTAC 5 cut(s) 287, 355, 1045, 1159, 1410
RsaNI GTAC 5 cut(s) 286, 354, 1044, 1158, 1409
RseI CAYNNNNRTG 1 cut(s) 1095
SaqAI TTAA 3 cut(s) 903, 1010, 1289
SatI GCNGC 8 cut(s) 132, 342, 414, 1193, 1305, 1533, 1614, 1650
Sau3AI GATC 9 cut(s) 226, 304, 478, 747, 859, 961, 1000, 1510, 1576
Sau96I GGNCC 3 cut(s) 185, 775, 1475
SchI GAGTC 2 cut(s) 618, 712
ScrFI CCNGG 3 cut(s) 52, 927, 1329
SduI GDGCHC 1 cut(s) 127
SfaNI GCATC 4 cut(s) 454, 1273, 1519, 1696
SfcI CTRYAG 2 cut(s) 342, 1449
SinI GGWCC 3 cut(s) 185, 775, 1475
SmiMI CAYNNNNRTG 1 cut(s) 1095
Sse9I AATT 9 cut(s) 56, 88, 207, 647, 768, 781, 952, 1493, 1517
SsiI CCGC 5 cut(s) 132, 1161, 1192, 1532, 1599
SspMI CTAG 2 cut(s) 674, 800
StyD4I CCNGG 3 cut(s) 50, 925, 1327
TaaI ACNGT 6 cut(s) 218, 256, 353, 370, 619, 1063
TaiI ACGT 2 cut(s) 1445, 1551
TaqI TCGA 4 cut(s) 7, 196, 852, 1017
TasI AATT 9 cut(s) 56, 88, 207, 647, 768, 781, 952, 1493, 1517
TatI WGTACW 2 cut(s) 285, 1408
TauI GCSGC 3 cut(s) 134, 1195, 1535
TfiI GAWTC 1 cut(s) 1569
Tru1I TTAA 3 cut(s) 903, 1010, 1289
Tru9I TTAA 3 cut(s) 903, 1010, 1289
TscAI CASTG 4 cut(s) 712, 750, 1485, 1624
TseFI GTSAC 3 cut(s) 218, 235, 1057
TseI GCWGC 5 cut(s) 341, 413, 1304, 1613, 1649
Tsp45I GTSAC 3 cut(s) 218, 235, 1057
TspDTI ATGAA 4 cut(s) 660, 683, 774, 1404
TspGWI ACGGA 1 cut(s) 22
TspRI CASTG 4 cut(s) 712, 750, 1485, 1624
Tth111I GACNNNGTC 1 cut(s) 1022
Van91I CCANNNNNTGG 1 cut(s) 1334
VpaK11BI GGWCC 3 cut(s) 185, 775, 1475
XapI RAATTY 2 cut(s) 768, 781
XmnI GAANNNNTTC 1 cut(s) 13
XspI CTAG 2 cut(s) 674, 800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.