pycom09g10940
TCP Family

Belongs to the chaperonin (HSP60) family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
9042840 .. 9047068
4229 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g10940.13

Sequence Viewer

Length: 1506 bp
ATGTATCGAATAGCTTCAAAATTAGCCTCCTCTACTTCCAGGAAACTGGTGGGCAGTAGGGTTATAAGCAATAGGAATTATGTGGCAAAAGATATCAGTTTCGGGGTTGGGGCTCGTGCAGCTTTGTTGCAAGGTGTCTCTGAGGTTGCCGAGGCTGTCAAAGTTACAATGGGACCAAAGGGTCGCTATGTGATTATTGAGAACACTCATAAGGATCCCAAGGTCACCAAGGATGGGGTTACTGTTGCAAAAAGCATTAGTTTCGAGGGGAAGTACAAGAATGTGGGTGCAGATCTTGTGAAACAGGTTGCTAAAGCTACTAATACTGCTGCAGGAGATGGTACGACTTGTGCAACTGTCCTGACCCAGGCAATTCTCATAGAAGGTTGCAAGTCAATAGCTGCTGGGGTAAATGCAATGGATTTGCGCATTGGTATCAATGCGGCAGTTGATGCTGTTGTTACTGATCTGAAAAGCAGAGCATTGATGATAAGCACACCAGATGAGATTACACAGGTTGCAACTATTTCTGCAAATGGTGAACAAGAGATTGGAGAACTGATAGCAAAAGCAATGGAAAAAGTTGGGAAGGAAGGAGTCATTACTGTTGCTGATGGGAACACTTTGGATAATGAATTGGAAGTGGTGGAAGGGATGAAGCTAGGCAGAGGTTATATTTCTCCTTATTTTATCACCGACCCAAAGACTCAGAAATGTGAACTGGAAAATGCACTGATCCTCATTTGTGAGAAGAAAATTTCAGACCTGAATTCACTTGTGAAAATACTAGAGCTGGCTGTAAATAAAAATAGACCACTTCTTATTGTGGCTGAGGATGTCGAAGGTGATCCACTTGCTATGCTTATACTCAACAAACATCATGCTGGAGTTAAGGTTTGTGCCATCAAAGCTCCCGGTTTTGGGGAAAACAGGAGAGCTAGTTTAGATGATCTCGCCGTTTTTACTGGGGGAGAGGTTGTCAGTGAAGCTCGTGGTTTGACTCTTGACAAAGTCAAATATGAAATGCTTGGCTATGCAAAAAAGGTGACTGTCTCTCTTGACGACACAATCATTCTACATGGAGGAGGGGATAAGAAGCTGATTGAAGAAAGATGTGAGGAGTTGAGAACAGCAATGGACAAGAGTGATGCCATGTTTGACAAGGAGAAAGCACAGGAGCGGCTGTCAAAGCTATCTGGTGGAGTTGCCGTCTTCAAGGTTGGAGGGGTCAGTGAGGCAGAGGTTGGGGAGAGGAAAGATAGGGTAACCGATGCTTTGAATGCTACAAGAGCAGCCGTGGAAGAGGGAATAGTGCCAGGGGGCGGTGTTGCTCTCTTGTATGCTATAAAATCCTTGGAGAACCTTCACATGCAAAATGAAGACCAAAGAAGAGGAGTACAAATAATCCAGAATGCTCTTAAGGCACCTACGTTCACTATAGTTTCGAATGCTGGTTTTGATGGTGCACTTGTTCTTGGTAAATTGTTGGAACAAGATCGATCTTAA

Protein Analysis

502

Amino Acids

53.42

Weight (kDa)

6.33

Isoelectric Point (pI)

20.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13860
fragaria_vesca FvH4_6g33450
malus_domestica MD09G1192900.v1.1
prunus_persica Prupe.3G049300_v2.0.a1
pyrus_communis pycom09g10940
rosa_chinensis RchiOBHm_Chr2g0143341
rosa_laevigata RLG00000020029
rosa_multiflora Rmu_sc0003507.1_g000015
rosa_roxburghii Rroxscaffold_2G00101960
rosa_rugosa Rorug02G0380700
rosa_samantha Rh2DG451700
rosa_wichuraiana Rw2G035350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 65
AasI GACNNNNNNGTC 1 cut(s) 180
Acc16I TGCGCA 1 cut(s) 428
AccB1I GGYRCC 1 cut(s) 1423
AccBSI CCGCTC 1 cut(s) 1180
AciI CCGC 3 cut(s) 443, 1180, 1323
AclWI GGATC 4 cut(s) 209, 222, 730, 842
AcsI RAATTY 2 cut(s) 756, 769
AfaI GTAC 3 cut(s) 275, 343, 1398
AfiI CCNNNNNNNGG 5 cut(s) 234, 367, 920, 921, 1322
AflII CTTAAG 1 cut(s) 1418
AgsI TTSAA 4 cut(s) 18, 1106, 1216, 1279
AjnI CCWGG 3 cut(s) 38, 366, 1315
AjuI GAANNNNNNNTTGG 2 cut(s) 534, 566
Alw21I GWGCWC 1 cut(s) 1468
Alw26I GTCTC 2 cut(s) 142, 1057
Alw44I GTGCAC 1 cut(s) 1464
AlwI GGATC 4 cut(s) 209, 222, 730, 842
ApaLI GTGCAC 1 cut(s) 1464
ApeKI GCWGC 4 cut(s) 119, 329, 401, 1292
ApoI RAATTY 2 cut(s) 756, 769
Asp700I GAANNNNTTC 1 cut(s) 13
AspLEI GCGC 1 cut(s) 429
AspS9I GGNCC 1 cut(s) 173
AsuC2I CCSGG 1 cut(s) 915
AsuHPI GGTGA 5 cut(s) 217, 551, 685, 857, 1057
AsuII TTCGAA 1 cut(s) 1445
AvaII GGWCC 1 cut(s) 173
BaeGI GKGCMC 1 cut(s) 1468
BamHI GGATCC 1 cut(s) 214
BanI GGYRCC 1 cut(s) 1423
BanII GRGCYC 1 cut(s) 115
BauI CACGAG 2 cut(s) 114, 990
BbsI GAAGAC 2 cut(s) 1204, 1386
Bbv12I GWGCWC 1 cut(s) 1468
BbvCI CCTCAGC 1 cut(s) 831
BbvI GCAGC 4 cut(s) 131, 316, 388, 1304
BccI CCATC 5 cut(s) 227, 332, 608, 911, 1454
BceAI ACGGC 3 cut(s) 941, 1193, 1280
BcgI CGANNNNNNTGC 2 cut(s) 244, 278
BciT130I CCWGG 3 cut(s) 40, 368, 1317
BcnI CCSGG 1 cut(s) 915
BcoDI GTCTC 2 cut(s) 142, 1057
BfaI CTAG 3 cut(s) 662, 788, 939
BfmI CTRYAG 2 cut(s) 330, 1437
BfrI CTTAAG 1 cut(s) 1418
BglII AGATCT 1 cut(s) 292
BisI GCNGC 6 cut(s) 120, 330, 402, 444, 1181, 1293
BlsI GCNGC 6 cut(s) 121, 331, 403, 445, 1182, 1294
Bme1390I CCNGG 4 cut(s) 40, 368, 915, 1317
Bme18I GGWCC 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 3 cut(s) 174, 216, 1425
BmrFI CCNGG 4 cut(s) 40, 368, 915, 1317
BmrI ACTGGG 1 cut(s) 975
BmsI GCATC 3 cut(s) 442, 1138, 1261
BmuI ACTGGG 1 cut(s) 975
BpiI GAAGAC 2 cut(s) 1204, 1386
BpmI CTGGAG 1 cut(s) 906
Bpu10I CCTNAGC 1 cut(s) 831
Bpu14I TTCGAA 1 cut(s) 1445
BpuMI CCSGG 1 cut(s) 915
Bsa29I ATCGAT 1 cut(s) 1498
BsaJI CCNNGG 7 cut(s) 150, 219, 228, 366, 1296, 1316, 1353
Bsc4I CCNNNNNNNGG 5 cut(s) 234, 367, 920, 921, 1322
Bse1I ACTGG 3 cut(s) 51, 726, 970
Bse3DI GCAATG 3 cut(s) 423, 579, 1140
BseBI CCWGG 3 cut(s) 40, 368, 1317
BseCI ATCGAT 1 cut(s) 1498
BseDI CCNNGG 7 cut(s) 150, 219, 228, 366, 1296, 1316, 1353
BseGI GGATG 3 cut(s) 238, 660, 841
BseLI CCNNNNNNNGG 5 cut(s) 234, 367, 920, 921, 1322
BseMI GCAATG 3 cut(s) 423, 579, 1140
BseMII CTCAG 3 cut(s) 132, 722, 822
BseNI ACTGG 3 cut(s) 51, 726, 970
BseRI GAGGAG 4 cut(s) 19, 1098, 1133, 1407
BseSI GKGCMC 1 cut(s) 1468
BseXI GCAGC 4 cut(s) 131, 316, 388, 1304
BseYI CCCAGC 1 cut(s) 404
BsgI GTGCAG 2 cut(s) 138, 309
BshNI GGYRCC 1 cut(s) 1423
BshVI ATCGAT 1 cut(s) 1498
BsiHKAI GWGCWC 1 cut(s) 1468
BsiSI CCGG 1 cut(s) 915
BslFI GGGAC 1 cut(s) 186
BslI CCNNNNNNNGG 5 cut(s) 234, 367, 920, 921, 1322
BsmAI GTCTC 2 cut(s) 142, 1057
BsmFI GGGAC 1 cut(s) 186
BsmI GAATGC 3 cut(s) 1285, 1417, 1453
Bsp119I TTCGAA 1 cut(s) 1445
Bsp1286I GDGCHC 2 cut(s) 115, 1468
Bsp143I GATC 8 cut(s) 214, 292, 466, 735, 847, 949, 1495, 1499
BspACI CCGC 3 cut(s) 443, 1180, 1323
BspCNI CTCAG 3 cut(s) 133, 721, 823
BspDI ATCGAT 1 cut(s) 1498
BspLI GGNNCC 3 cut(s) 174, 216, 1425
BspMAI CTGCAG 1 cut(s) 334
BspPI GGATC 4 cut(s) 209, 222, 730, 842
BspT104I TTCGAA 1 cut(s) 1445
BspT107I GGYRCC 1 cut(s) 1423
BspTI CTTAAG 1 cut(s) 1418
BsrBI CCGCTC 1 cut(s) 1180
BsrDI GCAATG 3 cut(s) 423, 579, 1140
BsrI ACTGG 3 cut(s) 51, 726, 970
BssECI CCNNGG 7 cut(s) 150, 219, 228, 366, 1296, 1316, 1353
BssMI GATC 8 cut(s) 214, 292, 466, 735, 847, 949, 1495, 1499
BssSI CACGAG 2 cut(s) 114, 990
BssT1I CCWWGG 3 cut(s) 219, 228, 1353
Bst2BI CACGAG 2 cut(s) 114, 990
Bst2UI CCWGG 3 cut(s) 40, 368, 1317
Bst4CI ACNGT 4 cut(s) 244, 358, 607, 1051
Bst6I CTCTTC 2 cut(s) 1296, 1384
BstAFI CTTAAG 1 cut(s) 1418
BstAPI GCANNNNNTGC 1 cut(s) 452
BstBI TTCGAA 1 cut(s) 1445
BstC8I GCNNGC 1 cut(s) 795
BstDEI CTNAG 3 cut(s) 141, 708, 831
BstDSI CCRYGG 1 cut(s) 1296
BstEII GGTNACC 2 cut(s) 223, 1264
BstENI CCTNNNNNAGG 1 cut(s) 365
BstF5I GGATG 3 cut(s) 238, 660, 841
BstHHI GCGC 1 cut(s) 429
BstKTI GATC 8 cut(s) 217, 295, 469, 738, 850, 952, 1498, 1502
BstMAI GTCTC 2 cut(s) 142, 1057
BstMBI GATC 8 cut(s) 214, 292, 466, 735, 847, 949, 1495, 1499
BstMWI GCNNNNNNNGC 7 cut(s) 119, 452, 908, 1189, 1280, 1289, 1421
BstNI CCWGG 3 cut(s) 40, 368, 1317
BstNSI RCATGY 1 cut(s) 1372
BstPI GGTNACC 2 cut(s) 223, 1264
BstSCI CCNGG 4 cut(s) 38, 366, 913, 1315
BstSFI CTRYAG 2 cut(s) 330, 1437
BstSLI GKGCMC 1 cut(s) 1468
BstV1I GCAGC 4 cut(s) 131, 316, 388, 1304
BstV2I GAAGAC 2 cut(s) 1204, 1386
BstX2I RGATCY 2 cut(s) 214, 292
BstXI CCANNNNNNTGG 1 cut(s) 46
BstYI RGATCY 2 cut(s) 214, 292
Bsu15I ATCGAT 1 cut(s) 1498
BsuTUI ATCGAT 1 cut(s) 1498
BtgI CCRYGG 1 cut(s) 1296
BtsCI GGATG 3 cut(s) 238, 660, 841
BtsIMutI CAGTG 3 cut(s) 731, 988, 1237
Cac8I GCNNGC 1 cut(s) 795
CfoI GCGC 1 cut(s) 429
Cfr13I GGNCC 1 cut(s) 173
ClaI ATCGAT 1 cut(s) 1498
Csp6I GTAC 3 cut(s) 274, 342, 1397
CviAII CATG 4 cut(s) 881, 1079, 1153, 1369
CviQI GTAC 3 cut(s) 274, 342, 1397
DdeI CTNAG 3 cut(s) 141, 708, 831
DpnI GATC 8 cut(s) 216, 294, 468, 737, 849, 951, 1497, 1501
DpnII GATC 8 cut(s) 214, 292, 466, 735, 847, 949, 1495, 1499
DrdI GACNNNNNNGTC 1 cut(s) 180
DseDI GACNNNNNNGTC 1 cut(s) 180
Eam1104I CTCTTC 2 cut(s) 1296, 1384
EarI CTCTTC 2 cut(s) 1296, 1384
Eco130I CCWWGG 3 cut(s) 219, 228, 1353
Eco24I GRGCYC 1 cut(s) 115
Eco32I GATATC 1 cut(s) 94
Eco47I GGWCC 1 cut(s) 173
Eco91I GGTNACC 2 cut(s) 223, 1264
EcoNI CCTNNNNNAGG 1 cut(s) 365
EcoO65I GGTNACC 2 cut(s) 223, 1264
EcoRI GAATTC 1 cut(s) 769
EcoRII CCWGG 3 cut(s) 38, 366, 1315
EcoRV GATATC 1 cut(s) 94
EcoT14I CCWWGG 3 cut(s) 219, 228, 1353
EcoT38I GRGCYC 1 cut(s) 115
ErhI CCWWGG 3 cut(s) 219, 228, 1353
FaeI CATG 4 cut(s) 884, 1082, 1156, 1372
FaqI GGGAC 1 cut(s) 186
FatI CATG 4 cut(s) 880, 1078, 1152, 1368
Fnu4HI GCNGC 6 cut(s) 120, 330, 402, 444, 1181, 1293
FokI GGATG 3 cut(s) 245, 667, 848
FriOI GRGCYC 1 cut(s) 115
Fsp4HI GCNGC 6 cut(s) 120, 330, 402, 444, 1181, 1293
FspBI CTAG 3 cut(s) 662, 788, 939
FspI TGCGCA 1 cut(s) 428
GlaI GCGC 1 cut(s) 428
GluI GCNGC 6 cut(s) 120, 330, 402, 444, 1181, 1293
GsaI CCCAGC 1 cut(s) 408
GsuI CTGGAG 1 cut(s) 906
HapII CCGG 1 cut(s) 915
HhaI GCGC 1 cut(s) 429
Hin1II CATG 4 cut(s) 884, 1082, 1156, 1372
Hin6I GCGC 1 cut(s) 427
HinP1I GCGC 1 cut(s) 427
HinfI GANTC 3 cut(s) 597, 706, 1000
HpaII CCGG 1 cut(s) 915
HphI GGTGA 5 cut(s) 217, 551, 685, 857, 1057
Hpy166II GTNNAC 4 cut(s) 542, 719, 1434, 1466
Hpy188I TCNGA 4 cut(s) 142, 471, 711, 763
Hpy188III TCNNGA 4 cut(s) 361, 1004, 1058, 1408
Hpy8I GTNNAC 4 cut(s) 542, 719, 1434, 1466
HpyAV CCTTC 6 cut(s) 377, 583, 587, 644, 836, 1373
HpyCH4III ACNGT 4 cut(s) 244, 358, 607, 1051
HpyCH4IV ACGT 1 cut(s) 1430
HpyF10VI GCNNNNNNNGC 7 cut(s) 119, 452, 908, 1189, 1280, 1289, 1421
HpyF3I CTNAG 3 cut(s) 141, 708, 831
HpySE526I ACGT 1 cut(s) 1430
Hsp92II CATG 4 cut(s) 884, 1082, 1156, 1372
HspAI GCGC 1 cut(s) 427
Kzo9I GATC 8 cut(s) 214, 292, 466, 735, 847, 949, 1495, 1499
LmnI GCTCC 2 cut(s) 916, 1177
Lsp1109I GCAGC 4 cut(s) 131, 316, 388, 1304
LweI GCATC 3 cut(s) 442, 1138, 1261
MaeI CTAG 3 cut(s) 662, 788, 939
MaeII ACGT 1 cut(s) 1430
MaeIII GTNAC 6 cut(s) 163, 223, 238, 460, 1045, 1264
MalI GATC 8 cut(s) 216, 294, 468, 737, 849, 951, 1497, 1501
MbiI CCGCTC 1 cut(s) 1180
MboI GATC 8 cut(s) 214, 292, 466, 735, 847, 949, 1495, 1499
MboII GAAGA 6 cut(s) 763, 1118, 1204, 1313, 1391, 1401
MflI RGATCY 2 cut(s) 214, 292
MhlI GDGCHC 2 cut(s) 115, 1468
MluCI AATT 7 cut(s) 20, 76, 372, 635, 756, 769, 1481
MlyI GAGTC 3 cut(s) 606, 700, 994
MmeI TCCRAC 2 cut(s) 1201, 1467
MroXI GAANNNNTTC 1 cut(s) 13
MseI TTAA 3 cut(s) 891, 1419, 1504
MspCI CTTAAG 1 cut(s) 1418
MspI CCGG 1 cut(s) 915
MspR9I CCNGG 4 cut(s) 40, 368, 915, 1317
Mva1269I GAATGC 3 cut(s) 1285, 1417, 1453
MvaI CCWGG 3 cut(s) 40, 368, 1317
MwoI GCNNNNNNNGC 7 cut(s) 119, 452, 908, 1189, 1280, 1289, 1421
NciI CCSGG 1 cut(s) 915
NdeII GATC 8 cut(s) 214, 292, 466, 735, 847, 949, 1495, 1499
NlaIII CATG 4 cut(s) 884, 1082, 1156, 1372
NlaIV GGNNCC 3 cut(s) 174, 216, 1425
NmeAIII GCCGAG 1 cut(s) 175
NmuCI GTSAC 2 cut(s) 223, 1045
NsbI TGCGCA 1 cut(s) 428
NspI RCATGY 1 cut(s) 1372
NspV TTCGAA 1 cut(s) 1445
PctI GAATGC 3 cut(s) 1285, 1417, 1453
PdmI GAANNNNTTC 1 cut(s) 13
PflFI GACNNNGTC 1 cut(s) 1010
PfoI TCCNGGA 1 cut(s) 38
PkrI GCNGC 6 cut(s) 121, 331, 403, 445, 1182, 1294
PleI GAGTC 3 cut(s) 605, 700, 994
PpsI GAGTC 3 cut(s) 605, 700, 994
PsiI TTATAA 1 cut(s) 65
Psp6I CCWGG 3 cut(s) 38, 366, 1315
PspEI GGTNACC 2 cut(s) 223, 1264
PspFI CCCAGC 1 cut(s) 404
PspGI CCWGG 3 cut(s) 38, 366, 1315
PspN4I GGNNCC 3 cut(s) 174, 216, 1425
PspPI GGNCC 1 cut(s) 173
PstI CTGCAG 1 cut(s) 334
PsuI RGATCY 2 cut(s) 214, 292
PsyI GACNNNGTC 1 cut(s) 1010
RsaI GTAC 3 cut(s) 275, 343, 1398
RsaNI GTAC 3 cut(s) 274, 342, 1397
SaqAI TTAA 3 cut(s) 891, 1419, 1504
SatI GCNGC 6 cut(s) 120, 330, 402, 444, 1181, 1293
Sau3AI GATC 8 cut(s) 214, 292, 466, 735, 847, 949, 1495, 1499
Sau96I GGNCC 1 cut(s) 173
SchI GAGTC 3 cut(s) 606, 700, 994
ScrFI CCNGG 4 cut(s) 40, 368, 915, 1317
SduI GDGCHC 2 cut(s) 115, 1468
SfaNI GCATC 3 cut(s) 442, 1138, 1261
SfcI CTRYAG 2 cut(s) 330, 1437
SfuI TTCGAA 1 cut(s) 1445
SinI GGWCC 1 cut(s) 173
SmlI CTYRAG 1 cut(s) 1418
SmoI CTYRAG 1 cut(s) 1418
Sse9I AATT 7 cut(s) 20, 76, 372, 635, 756, 769, 1481
SsiI CCGC 3 cut(s) 443, 1180, 1323
SspMI CTAG 3 cut(s) 662, 788, 939
StyD4I CCNGG 4 cut(s) 38, 366, 913, 1315
StyI CCWWGG 3 cut(s) 219, 228, 1353
TaaI ACNGT 4 cut(s) 244, 358, 607, 1051
TaiI ACGT 1 cut(s) 1433
TaqI TCGA 5 cut(s) 7, 264, 840, 1445, 1498
TasI AATT 7 cut(s) 20, 76, 372, 635, 756, 769, 1481
TatI WGTACW 2 cut(s) 273, 1396
TauI GCSGC 2 cut(s) 446, 1183
Tru1I TTAA 3 cut(s) 891, 1419, 1504
Tru9I TTAA 3 cut(s) 891, 1419, 1504
TscAI CASTG 3 cut(s) 738, 988, 1237
TseFI GTSAC 2 cut(s) 223, 1045
TseI GCWGC 4 cut(s) 119, 329, 401, 1292
Tsp45I GTSAC 2 cut(s) 223, 1045
TspDTI ATGAA 4 cut(s) 648, 671, 1035, 1392
TspRI CASTG 3 cut(s) 738, 988, 1237
Tth111I GACNNNGTC 1 cut(s) 1010
Vha464I CTTAAG 1 cut(s) 1418
VneI GTGCAC 1 cut(s) 1464
VpaK11BI GGWCC 1 cut(s) 173
XagI CCTNNNNNAGG 1 cut(s) 365
XapI RAATTY 2 cut(s) 756, 769
XceI RCATGY 1 cut(s) 1372
XcmI CCANNNNNNNNNTGG 1 cut(s) 46
XmnI GAANNNNTTC 1 cut(s) 13
XspI CTAG 3 cut(s) 662, 788, 939
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.