Prupe.3G067500_v2.0.a1

guanine nucleotide exchange factor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
4877114 .. 4881556
4443 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G067500.1

Sequence Viewer

Length: 1599 bp
ATGGTCCGAGCACTTGAAGAAGAAGAAGAAAATTACAAGTCTAGATTGCATAATTTCAAAGGGATGCATGAGAATACAGGAAGGCATACCAAGAGTTTGAGCGTTGAGAGCGCTACCGCGTTAGAGTTTCAGGACGATGATAAGAAGGGTTCAAGAAGTAATGGAGCTCAAGGCTCCAAGTCACGGTTGAGCAAAGAAGAAGCCGAAGCCAGAGAAAAGCAACAAGAGACAGATATGGAGCAGATGAAGGAGAGGTTTGCCAAATTGCTTTTGGGAGAAGATATGTCTGGTGGAGGAAAGGGTGTTTCGTCAGCTTTGGCATTGTCGAATGCTATTACAAACCTTGCCGCTTCTGTTTTTGGAGAACAAACTCGCCTAGAACCCATGTCTGCAGACAGGAAAAAGAGGTGGAGAAAAGAAATAGATTGGTTATTATGTGTGAGTGATTACATAGTTGAATTTGTTCCTTCACAACAGAAATCCAAGGATGGAAGCAATATGGAGATAATGGTGACTCGGCAACGAACAGATCTTCACATGAACATCCCTGCCCTGCGAAAGCTTGATGCAATGCTTATTGACTGTCTAGATAATTTCATAGACAAGCAAGAGTTCTATTATGTATCCAAAGATGCTGATGAGAACGAGAAAGGAAATGCAAAGAGAAAAGATGACAAATGGTGGCTACCTACTCCTAAAGTTCCGCCAAATGGTTTATCAGAAGCGGCAAGAAAATTTTTGCAGTATCAAAAAGATTGTGTCAACCAAGTGCTTAAAGCAGCAATGGCCATAAATGCTCAAGTTTTAACAGAAATGGAAATTCCCGAGAACTACATTGAATCCCTCCCCAAGAATGGAAGGGCAAGTCTTGGTGATTCGATCTATCGGAGCATTACAGTTGAATTCTTTGATCCTGACCAATTTCTTTGCAGCATGGACTTATCATCGGAGCACAAAATACTGGACCTCAAGAACAAAATGGAAGCTTCCATGGTGATATGGAAGAGAAAGATGAACCAAAAAGATGGGAAATCAGGTTGGGGCTCAGCAGTGAGCTTGGAAAAGAGAGAGCTCTTTGAAGAGAGAGCAGAGACCATCTTACTCCTCCTCAAGCAGAGGTTCCCTGGAATCCCTCAATCTTCACTAGACATCAGTAAAATCCAATACAACGCGAATGTTGGACAGGCTATTCTTGAGAGCTATTCAAGAATACTAGAAAGCTTGGCCTTCACAGTCTTGTCCCGGATTGAAGATGTACTACACGCTGATTATGCTTCTCAGAATCCATCACATGTAGCATGTAAAAGGAACAATTTAGGAGAATCTACACCAGTTGCAACTTCTCCAGATAGGTCCACGAAAGAAGAGAATTCCGGGACAGAGACACCTGGTTCAATGACACTGTCGGATTTCATGGGTTGGGGATTGGATCAAGTTGACACTGAGGCAAAAAAGGACCCAGATGATACAGATGAAGGCAAAGACTTCTGTGAGGTTAAGCATCCACATATGCAGAAGATTGCCAACATAGTGACCAACAAGAAGATTTCCTATCTAGATAACTTGGGTGGATTGAGAAGTCCAACGGCACGCCACTAA

Protein Analysis

533

Amino Acids

60.07

Weight (kDa)

5.69

Isoelectric Point (pI)

46.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79860
fragaria_vesca FvH4_6g31730
malus_domestica MD17G1191500.v1.1
prunus_persica Prupe.3G067500_v2.0.a1
pyrus_communis pycom09g12580 pycom17g19840
rosa_chinensis RchiOBHm_Chr2g0138921
rosa_laevigata RLG00000019768
rosa_multiflora Rmu_sc0001376.1_g000001
rosa_roxburghii Rroxscaffold_2G00105870
rosa_rugosa Rorug02G0353100
rosa_samantha Rh2AG403200 Rh2BG413700 Rh2CG389300 Rh2DG423500
rosa_wichuraiana Rw2G032800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 119, 1172
AciI CCGC 4 cut(s) 117, 348, 704, 725
AclWI GGATC 2 cut(s) 905, 1437
AcoI YGGCCR 1 cut(s) 786
AcsI RAATTY 5 cut(s) 458, 734, 819, 902, 1369
AfaI GTAC 1 cut(s) 1257
AfeI AGCGCT 1 cut(s) 112
AfiI CCNNNNNNNGG 3 cut(s) 183, 710, 854
AflIII ACRYGT 1 cut(s) 1291
AjnI CCWGG 2 cut(s) 1123, 1387
AluBI AGCT 8 cut(s) 167, 314, 562, 986, 1056, 1072, 1200, 1221
AluI AGCT 8 cut(s) 167, 314, 562, 986, 1056, 1072, 1200, 1221
Alw21I GWGCWC 4 cut(s) 13, 169, 954, 1074
Alw26I GTCTC 3 cut(s) 221, 1085, 1376
AlwI GGATC 2 cut(s) 905, 1437
Ama87I CYCGRG 1 cut(s) 824
Aor51HI AGCGCT 1 cut(s) 112
AoxI GGCC 2 cut(s) 786, 1224
ApeKI GCWGC 2 cut(s) 779, 930
ApoI RAATTY 5 cut(s) 458, 734, 819, 902, 1369
Asp700I GAANNNNTTC 1 cut(s) 462
AspLEI GCGC 1 cut(s) 113
AspS9I GGNCC 4 cut(s) 4, 964, 1353, 1456
AsuC2I CCSGG 2 cut(s) 1243, 1375
AsuHPI GGTGA 3 cut(s) 523, 884, 1006
AvaI CYCGRG 1 cut(s) 824
AvaII GGWCC 4 cut(s) 4, 964, 1353, 1456
BalI TGGCCA 1 cut(s) 788
BanII GRGCYC 3 cut(s) 169, 1046, 1074
BarI GAAGNNNNNNTAC 2 cut(s) 1242, 1274
Bbv12I GWGCWC 4 cut(s) 13, 169, 954, 1074
BbvI GCAGC 2 cut(s) 791, 942
BccI CCATC 4 cut(s) 482, 1019, 1103, 1294
BciT130I CCWGG 2 cut(s) 1125, 1389
BciVI GTATCC 1 cut(s) 634
BcnI CCSGG 2 cut(s) 1243, 1375
BcoDI GTCTC 3 cut(s) 221, 1085, 1376
BfaI CTAG 6 cut(s) 42, 377, 587, 1145, 1214, 1556
BfmI CTRYAG 1 cut(s) 390
BfoI RGCGCY 1 cut(s) 114
BfuI GTATCC 1 cut(s) 634
BglII AGATCT 1 cut(s) 529
BisI GCNGC 4 cut(s) 348, 726, 780, 931
BlpI GCTNAGC 1 cut(s) 1045
BlsI GCNGC 4 cut(s) 349, 727, 781, 932
Bme1390I CCNGG 4 cut(s) 1125, 1243, 1375, 1389
Bme18I GGWCC 4 cut(s) 4, 964, 1353, 1456
BmeT110I CYCGRG 1 cut(s) 824
BmgT120I GGNCC 4 cut(s) 4, 964, 1353, 1456
BmiI GGNNCC 3 cut(s) 175, 1121, 1458
BmrFI CCNGG 4 cut(s) 1125, 1243, 1375, 1389
BmsI GCATC 4 cut(s) 54, 556, 622, 1510
BpmI CTGGAG 1 cut(s) 1329
Bpu1102I GCTNAGC 1 cut(s) 1045
BpuEI CTTGAG 5 cut(s) 153, 783, 953, 1094, 1214
BpuMI CCSGG 2 cut(s) 1243, 1375
BsaI GGTCTC 1 cut(s) 1085
BsaJI CCNNGG 3 cut(s) 483, 990, 1123
Bsc4I CCNNNNNNNGG 3 cut(s) 183, 710, 854
Bse1I ACTGG 2 cut(s) 966, 1331
Bse3DI GCAATG 2 cut(s) 576, 789
BseBI CCWGG 2 cut(s) 1125, 1389
BseDI CCNNGG 3 cut(s) 483, 990, 1123
BseGI GGATG 4 cut(s) 69, 493, 543, 1501
BseLI CCNNNNNNNGG 3 cut(s) 183, 710, 854
BseMI GCAATG 2 cut(s) 576, 789
BseMII CTCAG 3 cut(s) 1059, 1292, 1434
BseNI ACTGG 2 cut(s) 966, 1331
BseRI GAGGAG 2 cut(s) 1094, 1097
BseXI GCAGC 2 cut(s) 791, 942
Bsh1236I CGCG 2 cut(s) 119, 1172
BshFI GGCC 2 cut(s) 788, 1226
BsiHKAI GWGCWC 4 cut(s) 13, 169, 954, 1074
BsiHKCI CYCGRG 1 cut(s) 824
BsiSI CCGG 2 cut(s) 1243, 1374
BslFI GGGAC 2 cut(s) 1225, 1390
BslI CCNNNNNNNGG 3 cut(s) 183, 710, 854
BsmAI GTCTC 3 cut(s) 221, 1085, 1376
BsmFI GGGAC 2 cut(s) 1225, 1390
BsmI GAATGC 1 cut(s) 334
BsnI GGCC 2 cut(s) 788, 1226
Bso31I GGTCTC 1 cut(s) 1085
BsoBI CYCGRG 1 cut(s) 824
Bsp1286I GDGCHC 5 cut(s) 13, 169, 954, 1046, 1074
Bsp143I GATC 4 cut(s) 529, 879, 910, 1429
Bsp1720I GCTNAGC 1 cut(s) 1045
Bsp19I CCATGG 1 cut(s) 990
BspACI CCGC 4 cut(s) 117, 348, 704, 725
BspANI GGCC 2 cut(s) 788, 1226
BspCNI CTCAG 3 cut(s) 1058, 1291, 1435
BspFNI CGCG 2 cut(s) 119, 1172
BspLI GGNNCC 3 cut(s) 175, 1121, 1458
BspMAI CTGCAG 1 cut(s) 394
BspPI GGATC 2 cut(s) 905, 1437
BspTNI GGTCTC 1 cut(s) 1085
BsrDI GCAATG 2 cut(s) 576, 789
BsrI ACTGG 2 cut(s) 966, 1331
BssECI CCNNGG 3 cut(s) 483, 990, 1123
BssMI GATC 4 cut(s) 529, 879, 910, 1429
BssT1I CCWWGG 2 cut(s) 483, 990
Bst2UI CCWGG 2 cut(s) 1125, 1389
Bst4CI ACNGT 5 cut(s) 186, 584, 898, 1234, 1404
Bst6I CTCTTC 3 cut(s) 998, 1074, 1359
BstC8I GCNNGC 1 cut(s) 1591
BstDEI CTNAG 3 cut(s) 1045, 1278, 1443
BstDSI CCRYGG 1 cut(s) 990
BstF5I GGATG 4 cut(s) 69, 493, 543, 1501
BstFNI CGCG 2 cut(s) 119, 1172
BstH2I RGCGCY 1 cut(s) 114
BstHHI GCGC 1 cut(s) 113
BstKTI GATC 4 cut(s) 532, 882, 913, 1432
BstMAI GTCTC 3 cut(s) 221, 1085, 1376
BstMBI GATC 4 cut(s) 529, 879, 910, 1429
BstMWI GCNNNNNNNGC 4 cut(s) 108, 785, 794, 1271
BstNI CCWGG 2 cut(s) 1125, 1389
BstNSI RCATGY 2 cut(s) 1295, 1302
BstSCI CCNGG 4 cut(s) 1123, 1241, 1373, 1387
BstSFI CTRYAG 1 cut(s) 390
BstUI CGCG 2 cut(s) 119, 1172
BstV1I GCAGC 2 cut(s) 791, 942
BstX2I RGATCY 1 cut(s) 529
BstXI CCANNNNNNTGG 1 cut(s) 1025
BstYI RGATCY 1 cut(s) 529
BsuI GTATCC 1 cut(s) 634
BsuRI GGCC 2 cut(s) 788, 1226
BtgI CCRYGG 1 cut(s) 990
BtsCI GGATG 4 cut(s) 69, 493, 543, 1501
BtsI GCAGTG 1 cut(s) 1056
BtsIMutI CAGTG 3 cut(s) 1056, 1400, 1440
Cac8I GCNNGC 1 cut(s) 1591
CfoI GCGC 1 cut(s) 113
Cfr13I GGNCC 4 cut(s) 4, 964, 1353, 1456
CsiI ACCWGGT 1 cut(s) 1387
Csp6I GTAC 1 cut(s) 1256
CviAII CATG 8 cut(s) 68, 385, 538, 934, 991, 1292, 1299, 1414
CviQI GTAC 1 cut(s) 1256
DdeI CTNAG 3 cut(s) 1045, 1278, 1443
DpnI GATC 4 cut(s) 531, 881, 912, 1431
DpnII GATC 4 cut(s) 529, 879, 910, 1429
EaeI YGGCCR 1 cut(s) 786
Eam1104I CTCTTC 3 cut(s) 998, 1074, 1359
EarI CTCTTC 3 cut(s) 998, 1074, 1359
EciI GGCGGA 1 cut(s) 693
Ecl136II GAGCTC 2 cut(s) 167, 1072
Eco130I CCWWGG 2 cut(s) 483, 990
Eco24I GRGCYC 3 cut(s) 169, 1046, 1074
Eco31I GGTCTC 1 cut(s) 1085
Eco47I GGWCC 4 cut(s) 4, 964, 1353, 1456
Eco47III AGCGCT 1 cut(s) 112
Eco53kI GAGCTC 2 cut(s) 167, 1072
Eco88I CYCGRG 1 cut(s) 824
EcoICRI GAGCTC 2 cut(s) 167, 1072
EcoO109I RGGNCCY 1 cut(s) 1456
EcoRI GAATTC 2 cut(s) 902, 1369
EcoRII CCWGG 2 cut(s) 1123, 1387
EcoT14I CCWWGG 2 cut(s) 483, 990
EcoT22I ATGCAT 1 cut(s) 69
EcoT38I GRGCYC 3 cut(s) 169, 1046, 1074
ErhI CCWWGG 2 cut(s) 483, 990
FaeI CATG 8 cut(s) 71, 388, 541, 937, 994, 1295, 1302, 1417
FaqI GGGAC 2 cut(s) 1225, 1390
FatI CATG 8 cut(s) 67, 384, 537, 933, 990, 1291, 1298, 1413
FauNDI CATATG 1 cut(s) 1509
Fnu4HI GCNGC 4 cut(s) 348, 726, 780, 931
FokI GGATG 4 cut(s) 76, 500, 530, 1488
FriOI GRGCYC 3 cut(s) 169, 1046, 1074
Fsp4HI GCNGC 4 cut(s) 348, 726, 780, 931
FspBI CTAG 6 cut(s) 42, 377, 587, 1145, 1214, 1556
GlaI GCGC 1 cut(s) 112
GluI GCNGC 4 cut(s) 348, 726, 780, 931
GsuI CTGGAG 1 cut(s) 1329
HaeII RGCGCY 1 cut(s) 114
HaeIII GGCC 2 cut(s) 788, 1226
HapII CCGG 2 cut(s) 1243, 1374
HhaI GCGC 1 cut(s) 113
Hin1II CATG 8 cut(s) 71, 388, 541, 937, 994, 1295, 1302, 1417
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HincII GTYRAC 2 cut(s) 763, 1438
HindII GTYRAC 2 cut(s) 763, 1438
HindIII AAGCTT 3 cut(s) 560, 984, 1219
HinfI GANTC 6 cut(s) 514, 839, 875, 1128, 1282, 1322
HpaII CCGG 2 cut(s) 1243, 1374
HphI GGTGA 3 cut(s) 523, 884, 1006
Hpy166II GTNNAC 3 cut(s) 763, 1356, 1438
Hpy188I TCNGA 6 cut(s) 8, 721, 888, 949, 1281, 1408
Hpy8I GTNNAC 3 cut(s) 763, 1356, 1438
HpyAV CCTTC 7 cut(s) 75, 139, 241, 477, 852, 1237, 1469
HpyCH4III ACNGT 5 cut(s) 186, 584, 898, 1234, 1404
HpyCH4V TGCA 9 cut(s) 49, 67, 392, 569, 659, 742, 930, 1337, 1513
HpyF10VI GCNNNNNNNGC 4 cut(s) 108, 785, 794, 1271
HpyF3I CTNAG 3 cut(s) 1045, 1278, 1443
Hsp92II CATG 8 cut(s) 71, 388, 541, 937, 994, 1295, 1302, 1417
HspAI GCGC 1 cut(s) 111
Kzo9I GATC 4 cut(s) 529, 879, 910, 1429
LmnI GCTCC 5 cut(s) 164, 179, 238, 888, 949
Lsp1109I GCAGC 2 cut(s) 791, 942
LweI GCATC 4 cut(s) 54, 556, 622, 1510
MabI ACCWGGT 1 cut(s) 1387
MaeI CTAG 6 cut(s) 42, 377, 587, 1145, 1214, 1556
MaeIII GTNAC 3 cut(s) 180, 511, 1531
MalI GATC 4 cut(s) 531, 881, 912, 1431
MboI GATC 4 cut(s) 529, 879, 910, 1429
MflI RGATCY 1 cut(s) 529
MhlI GDGCHC 5 cut(s) 13, 169, 954, 1046, 1074
MlsI TGGCCA 1 cut(s) 788
MluNI TGGCCA 1 cut(s) 788
MlyI GAGTC 1 cut(s) 508
MmeI TCCRAC 2 cut(s) 1159, 1386
Mox20I TGGCCA 1 cut(s) 788
Mph1103I ATGCAT 1 cut(s) 69
MroXI GAANNNNTTC 1 cut(s) 462
MscI TGGCCA 1 cut(s) 788
MseI TTAA 3 cut(s) 774, 806, 1497
Msp20I TGGCCA 1 cut(s) 788
MspI CCGG 2 cut(s) 1243, 1374
MspR9I CCNGG 4 cut(s) 1125, 1243, 1375, 1389
Mva1269I GAATGC 1 cut(s) 334
MvaI CCWGG 2 cut(s) 1125, 1389
MvnI CGCG 2 cut(s) 119, 1172
MwoI GCNNNNNNNGC 4 cut(s) 108, 785, 794, 1271
NciI CCSGG 2 cut(s) 1243, 1375
NcoI CCATGG 1 cut(s) 990
NdeI CATATG 1 cut(s) 1509
NdeII GATC 4 cut(s) 529, 879, 910, 1429
NlaIII CATG 8 cut(s) 71, 388, 541, 937, 994, 1295, 1302, 1417
NlaIV GGNNCC 3 cut(s) 175, 1121, 1458
NmeAIII GCCGAG 1 cut(s) 496
NmuCI GTSAC 3 cut(s) 180, 511, 1531
NsiI ATGCAT 1 cut(s) 69
NspI RCATGY 2 cut(s) 1295, 1302
PciI ACATGT 1 cut(s) 1291
PctI GAATGC 1 cut(s) 334
PdmI GAANNNNTTC 1 cut(s) 462
PfeI GAWTC 5 cut(s) 839, 875, 1128, 1282, 1322
PflFI GACNNNGTC 1 cut(s) 1402
PfoI TCCNGGA 2 cut(s) 1241, 1373
PkrI GCNGC 4 cut(s) 349, 727, 781, 932
PleI GAGTC 1 cut(s) 508
PpsI GAGTC 1 cut(s) 508
PpuMI RGGWCCY 1 cut(s) 1456
PscI ACATGT 1 cut(s) 1291
Psp124BI GAGCTC 2 cut(s) 169, 1074
Psp5II RGGWCCY 1 cut(s) 1456
Psp6I CCWGG 2 cut(s) 1123, 1387
PspGI CCWGG 2 cut(s) 1123, 1387
PspN4I GGNNCC 3 cut(s) 175, 1121, 1458
PspPI GGNCC 4 cut(s) 4, 964, 1353, 1456
PspPPI RGGWCCY 1 cut(s) 1456
PstI CTGCAG 1 cut(s) 394
PsuI RGATCY 1 cut(s) 529
PsyI GACNNNGTC 1 cut(s) 1402
RsaI GTAC 1 cut(s) 1257
RsaNI GTAC 1 cut(s) 1256
SacI GAGCTC 2 cut(s) 169, 1074
SaqAI TTAA 3 cut(s) 774, 806, 1497
SatI GCNGC 4 cut(s) 348, 726, 780, 931
Sau3AI GATC 4 cut(s) 529, 879, 910, 1429
Sau96I GGNCC 4 cut(s) 4, 964, 1353, 1456
SchI GAGTC 1 cut(s) 508
ScrFI CCNGG 4 cut(s) 1125, 1243, 1375, 1389
SduI GDGCHC 5 cut(s) 13, 169, 954, 1046, 1074
SexAI ACCWGGT 1 cut(s) 1387
SfaNI GCATC 4 cut(s) 54, 556, 622, 1510
SfcI CTRYAG 1 cut(s) 390
SinI GGWCC 4 cut(s) 4, 964, 1353, 1456
SmlI CTYRAG 5 cut(s) 168, 798, 968, 1109, 1193
SmoI CTYRAG 5 cut(s) 168, 798, 968, 1109, 1193
SsiI CCGC 4 cut(s) 117, 348, 704, 725
SspMI CTAG 6 cut(s) 42, 377, 587, 1145, 1214, 1556
SstI GAGCTC 2 cut(s) 169, 1074
StyD4I CCNGG 4 cut(s) 1123, 1241, 1373, 1387
StyI CCWWGG 2 cut(s) 483, 990
TaaI ACNGT 5 cut(s) 186, 584, 898, 1234, 1404
TaqI TCGA 2 cut(s) 326, 878
TatI WGTACW 1 cut(s) 1255
TauI GCSGC 2 cut(s) 350, 728
TfiI GAWTC 5 cut(s) 839, 875, 1128, 1282, 1322
Tru1I TTAA 3 cut(s) 774, 806, 1497
Tru9I TTAA 3 cut(s) 774, 806, 1497
TscAI CASTG 3 cut(s) 1056, 1407, 1447
TseFI GTSAC 3 cut(s) 180, 511, 1531
TseI GCWGC 2 cut(s) 779, 930
Tsp45I GTSAC 3 cut(s) 180, 511, 1531
TspDTI ATGAA 6 cut(s) 260, 554, 586, 1028, 1402, 1488
TspRI CASTG 3 cut(s) 1056, 1407, 1447
Tth111I GACNNNGTC 1 cut(s) 1402
VpaK11BI GGWCC 4 cut(s) 4, 964, 1353, 1456
XapI RAATTY 5 cut(s) 458, 734, 819, 902, 1369
XbaI TCTAGA 3 cut(s) 41, 586, 1555
XceI RCATGY 2 cut(s) 1295, 1302
XcmI CCANNNNNNNNNTGG 1 cut(s) 268
XmnI GAANNNNTTC 1 cut(s) 462
XspI CTAG 6 cut(s) 42, 377, 587, 1145, 1214, 1556
Zsp2I ATGCAT 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.