Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0029118

Physical Location & Seq

Genomic Coordinates Reverse (-)

6310415 .. 6312570

Gene Structure 2156 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G085700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGGAAAGTCTACTCATGACTGTGTTGCGTCGTCCGGCGTGAAGAAAGGTCCATGGACTCCGGCAGAGGACCAAAAGCTCTTAGCTTTCGTTCAAAAACATGGTCATGGAAATTGGCAATCCTTGCCTCAGAAAGCTGGTCTTCAAAGATGCGGCAAGAGCTGCAGGCTAAGATGGAGAAACTACCTACGACCTGATATTCAGAGGGGAAATTTCAGTTTGCTGGAAGACCAAACCATCATTCAACTTCATGCTCTTTTAGGCAACAGGTGGTCGGCTATTACTGCGCACTTACCAAAGAGAACAGACAACGAGGTCAAGAACTACTGGCACTCTCGTCTCAAGAAACGACTGGCCTTGAAAGGCTATGACCCTGTAACCCACAAGCCTAAGACTACCATCTTTGGCTTCGCCAATGGTTCAACTGATGACCCAAAGACCGGCTCAAACCTCAACCACATAGCTCAGTGGGAAAGTGCCAGGCTTCAAGCAGAAGCCAGATATGTGAGAGATTCAGAATTACACAAACAAGCTTATCATCCTTATTACAATAATGATATTTCTGCTGCCTCATCAATATTATTAGGTCATAATAAGGACTTTGGGCCGACTGATCAATTATTTGGACAAAACGCACCGCAATGCCTCGACATATTGAGAGCCTGGGAAAGCATGTTAATGTCAAATTACTCAAAAGCTGCAGGCGGCCAAGATCATGTTAATTCATTTGGTAATCATCTTGCTGGTGATTTCGAGCCTCCGATAATATCTGCAATATCAAGCAATGGATCATCATTGATGGATTGTTTCTTTCATGAACCAGTAGGGCAATGTTTTGATGAAAATTATGGCACTAGTATCACTGAACCATTCGCGACAGTCCACCACAAAAATAATGGGGCATGCTTGGAGGACTTTGGACTTTGGGAAATAATCATGCAAAGGAAAAAAACAATTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

321

Amino Acids

35.96

Weight (kDa)

8.74

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029118)

Species	Orthologous Gene IDs
prunus_persica	Prupe.3G085700_v2.0.a1 Prupe.3G085900_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	314
Acc16I	TGCGCA	1 cut(s)	288
AccI	GTMKAC	1 cut(s)	11
AccII	CGCG	1 cut(s)	875
AciI	CCGC	3 cut(s)	153, 638, 705
AclWI	GGATC	1 cut(s)	796
AcoI	YGGCCR	1 cut(s)	706
AcsI	RAATTY	1 cut(s)	211
AfiI	CCNNNNNNNGG	1 cut(s)	440
AgsI	TTSAA	6 cut(s)	95, 146, 245, 361, 423, 488
AhlI	ACTAGT	1 cut(s)	854
AjnI	CCWGG	2 cut(s)	479, 662
AjuI	GAANNNNNNNTTGG	2 cut(s)	225, 257
AluBI	AGCT	7 cut(s)	79, 86, 137, 162, 464, 533, 698
AluI	AGCT	7 cut(s)	79, 86, 137, 162, 464, 533, 698
Alw26I	GTCTC	1 cut(s)	344
AlwI	GGATC	1 cut(s)	796
AoxI	GGCC	3 cut(s)	354, 605, 706
ApeKI	GCWGC	3 cut(s)	162, 566, 698
ApoI	RAATTY	1 cut(s)	211
ArsI	GACNNNNNNTTYG	2 cut(s)	88, 120
AspLEI	GCGC	1 cut(s)	289
AspS9I	GGNCC	3 cut(s)	50, 70, 605
AsuHPI	GGTGA	1 cut(s)	758
AvaII	GGWCC	2 cut(s)	50, 70
BbsI	GAAGAC	2 cut(s)	134, 234
BbvI	GCAGC	3 cut(s)	149, 553, 685
BccI	CCATC	4 cut(s)	168, 245, 407, 793
BciT130I	CCWGG	2 cut(s)	481, 664
BclI	TGATCA	1 cut(s)	613
BcoDI	GTCTC	1 cut(s)	344
BcuI	ACTAGT	1 cut(s)	854
BfaI	CTAG	1 cut(s)	855
BfmI	CTRYAG	2 cut(s)	163, 699
BisI	GCNGC	5 cut(s)	154, 163, 567, 699, 706
BlsI	GCNGC	5 cut(s)	155, 164, 568, 700, 707
Bme1390I	CCNGG	2 cut(s)	481, 664
Bme18I	GGWCC	2 cut(s)	50, 70
BmgT120I	GGNCC	3 cut(s)	50, 70, 605
BmrFI	CCNGG	2 cut(s)	481, 664
BmsI	GCATC	1 cut(s)	140
BpiI	GAAGAC	2 cut(s)	134, 234
BpuEI	CTTGAG	1 cut(s)	326
BsaJI	CCNNGG	2 cut(s)	53, 663
Bsc4I	CCNNNNNNNGG	1 cut(s)	440
Bse118I	RCCGGY	1 cut(s)	440
Bse1I	ACTGG	3 cut(s)	332, 357, 821
Bse3DI	GCAATG	3 cut(s)	647, 790, 836
BseBI	CCWGG	2 cut(s)	481, 664
BseDI	CCNNGG	2 cut(s)	53, 663
BseGI	GGATG	1 cut(s)	538
BseLI	CCNNNNNNNGG	1 cut(s)	440
BseMI	GCAATG	3 cut(s)	647, 790, 836
BseMII	CTCAG	2 cut(s)	143, 479
BseNI	ACTGG	3 cut(s)	332, 357, 821
BseXI	GCAGC	3 cut(s)	149, 553, 685
Bsh1236I	CGCG	1 cut(s)	875
BshFI	GGCC	3 cut(s)	356, 607, 708
BsiSI	CCGG	3 cut(s)	36, 62, 441
BslI	CCNNNNNNNGG	1 cut(s)	440
BsmAI	GTCTC	1 cut(s)	344
BsmBI	CGTCTC	1 cut(s)	344
BsnI	GGCC	3 cut(s)	356, 607, 708
Bsp143I	GATC	3 cut(s)	613, 712, 788
Bsp19I	CCATGG	1 cut(s)	53
Bsp68I	TCGCGA	1 cut(s)	875
BspACI	CCGC	3 cut(s)	153, 638, 705
BspANI	GGCC	3 cut(s)	356, 607, 708
BspCNI	CTCAG	2 cut(s)	142, 478
BspFNI	CGCG	1 cut(s)	875
BspHI	TCATGA	2 cut(s)	16, 814
BspMAI	CTGCAG	2 cut(s)	167, 703
BspPI	GGATC	1 cut(s)	796
BsrDI	GCAATG	3 cut(s)	647, 790, 836
BsrFI	RCCGGY	1 cut(s)	440
BsrI	ACTGG	3 cut(s)	332, 357, 821
BssAI	RCCGGY	1 cut(s)	440
BssECI	CCNNGG	2 cut(s)	53, 663
BssMI	GATC	3 cut(s)	613, 712, 788
BssT1I	CCWWGG	1 cut(s)	53
Bst2UI	CCWGG	2 cut(s)	481, 664
Bst4CI	ACNGT	2 cut(s)	23, 880
BstAPI	GCANNNNNTGC	2 cut(s)	124, 162
BstC8I	GCNNGC	3 cut(s)	167, 703, 904
BstDEI	CTNAG	5 cut(s)	82, 129, 170, 390, 465
BstDSI	CCRYGG	1 cut(s)	53
BstF5I	GGATG	1 cut(s)	538
BstFNI	CGCG	1 cut(s)	875
BstHHI	GCGC	1 cut(s)	289
BstKTI	GATC	3 cut(s)	616, 715, 791
BstMAI	GTCTC	1 cut(s)	344
BstMBI	GATC	3 cut(s)	613, 712, 788
BstMWI	GCNNNNNNNGC	4 cut(s)	124, 159, 162, 284
BstNI	CCWGG	2 cut(s)	481, 664
BstNSI	RCATGY	2 cut(s)	676, 906
BstSCI	CCNGG	2 cut(s)	479, 662
BstSFI	CTRYAG	2 cut(s)	163, 699
BstUI	CGCG	1 cut(s)	875
BstV1I	GCAGC	3 cut(s)	149, 553, 685
BstV2I	GAAGAC	2 cut(s)	134, 234
BsuRI	GGCC	3 cut(s)	356, 607, 708
BtgI	CCRYGG	1 cut(s)	53
BtsCI	GGATG	1 cut(s)	538
BtsIMutI	CAGTG	2 cut(s)	473, 861
BtuMI	TCGCGA	1 cut(s)	875
Cac8I	GCNNGC	3 cut(s)	167, 703, 904
CciI	TCATGA	2 cut(s)	16, 814
CfoI	GCGC	1 cut(s)	289
Cfr10I	RCCGGY	1 cut(s)	440
Cfr13I	GGNCC	3 cut(s)	50, 70, 605
CseI	GACGC	1 cut(s)	18
DdeI	CTNAG	5 cut(s)	82, 129, 170, 390, 465
DpnI	GATC	3 cut(s)	615, 714, 790
DpnII	GATC	3 cut(s)	613, 712, 788
DrdI	GACNNNNNNGTC	1 cut(s)	314
DseDI	GACNNNNNNGTC	1 cut(s)	314
EaeI	YGGCCR	1 cut(s)	706
Eco130I	CCWWGG	1 cut(s)	53
Eco47I	GGWCC	2 cut(s)	50, 70
EcoRII	CCWGG	2 cut(s)	479, 662
EcoT14I	CCWWGG	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	53
Esp3I	CGTCTC	1 cut(s)	344
FalI	AAGNNNNNCTT	2 cut(s)	126, 158
FbaI	TGATCA	1 cut(s)	613
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	5 cut(s)	154, 163, 567, 699, 706
FokI	GGATG	1 cut(s)	525
Fsp4HI	GCNGC	5 cut(s)	154, 163, 567, 699, 706
FspBI	CTAG	1 cut(s)	855
FspI	TGCGCA	1 cut(s)	288
GlaI	GCGC	1 cut(s)	288
GluI	GCNGC	5 cut(s)	154, 163, 567, 699, 706
HaeIII	GGCC	3 cut(s)	356, 607, 708
HapII	CCGG	3 cut(s)	36, 62, 441
HgaI	GACGC	1 cut(s)	18
HhaI	GCGC	1 cut(s)	289
Hin6I	GCGC	1 cut(s)	287
HinP1I	GCGC	1 cut(s)	287
HindIII	AAGCTT	1 cut(s)	531
HinfI	GANTC	2 cut(s)	58, 512
HpaII	CCGG	3 cut(s)	36, 62, 441
HphI	GGTGA	1 cut(s)	758
Hpy166II	GTNNAC	2 cut(s)	12, 883
Hpy188I	TCNGA	5 cut(s)	132, 204, 517, 762, 962
Hpy188III	TCNNGA	5 cut(s)	17, 319, 343, 815, 874
Hpy8I	GTNNAC	2 cut(s)	12, 883
Hpy99I	CGWCG	1 cut(s)	34
HpyCH4III	ACNGT	2 cut(s)	23, 880
HpyCH4V	TGCA	4 cut(s)	165, 701, 773, 940
HpyF10VI	GCNNNNNNNGC	4 cut(s)	124, 159, 162, 284
HpyF3I	CTNAG	5 cut(s)	82, 129, 170, 390, 465
HspAI	GCGC	1 cut(s)	287
Ksp22I	TGATCA	1 cut(s)	613
Kzo9I	GATC	3 cut(s)	613, 712, 788
Lsp1109I	GCAGC	3 cut(s)	149, 553, 685
LweI	GCATC	1 cut(s)	140
MaeI	CTAG	1 cut(s)	855
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	3 cut(s)	615, 714, 790
MboI	GATC	3 cut(s)	613, 712, 788
MboII	GAAGA	3 cut(s)	55, 134, 239
MfeI	CAATTG	1 cut(s)	954
MluCI	AATT	8 cut(s)	112, 211, 518, 617, 685, 721, 844, 954
MlyI	GAGTC	1 cut(s)	52
MnlI	CCTC	9 cut(s)	61, 138, 198, 307, 461, 580, 656, 768, 904
MseI	TTAA	2 cut(s)	677, 720
MslI	CAYNNNNRTG	4 cut(s)	21, 105, 640, 677
MspI	CCGG	3 cut(s)	36, 62, 441
MspR9I	CCNGG	2 cut(s)	481, 664
MunI	CAATTG	1 cut(s)	954
MvaI	CCWGG	2 cut(s)	481, 664
MvnI	CGCG	1 cut(s)	875
MwoI	GCNNNNNNNGC	4 cut(s)	124, 159, 162, 284
NcoI	CCATGG	1 cut(s)	53
NdeII	GATC	3 cut(s)	613, 712, 788
NruI	TCGCGA	1 cut(s)	875
NsbI	TGCGCA	1 cut(s)	288
NspI	RCATGY	2 cut(s)	676, 906
PaeI	GCATGC	1 cut(s)	906
PagI	TCATGA	2 cut(s)	16, 814
PfeI	GAWTC	1 cut(s)	512
PkrI	GCNGC	5 cut(s)	155, 164, 568, 700, 707
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
Psp6I	CCWGG	2 cut(s)	479, 662
PspGI	CCWGG	2 cut(s)	479, 662
PspPI	GGNCC	3 cut(s)	50, 70, 605
PstI	CTGCAG	2 cut(s)	167, 703
RruI	TCGCGA	1 cut(s)	875
RseI	CAYNNNNRTG	4 cut(s)	21, 105, 640, 677
SaqAI	TTAA	2 cut(s)	677, 720
SatI	GCNGC	5 cut(s)	154, 163, 567, 699, 706
Sau3AI	GATC	3 cut(s)	613, 712, 788
Sau96I	GGNCC	3 cut(s)	50, 70, 605
SchI	GAGTC	1 cut(s)	52
ScrFI	CCNGG	2 cut(s)	481, 664
SfaNI	GCATC	1 cut(s)	140
SfcI	CTRYAG	2 cut(s)	163, 699
SinI	GGWCC	2 cut(s)	50, 70
SmiMI	CAYNNNNRTG	4 cut(s)	21, 105, 640, 677
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
SpeI	ACTAGT	1 cut(s)	854
SphI	GCATGC	1 cut(s)	906
Sse9I	AATT	8 cut(s)	112, 211, 518, 617, 685, 721, 844, 954
SsiI	CCGC	3 cut(s)	153, 638, 705
SspI	AATATT	1 cut(s)	579
SspMI	CTAG	1 cut(s)	855
StyD4I	CCNGG	2 cut(s)	479, 662
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	2 cut(s)	23, 880
TaqI	TCGA	2 cut(s)	648, 753
TasI	AATT	8 cut(s)	112, 211, 518, 617, 685, 721, 844, 954
TauI	GCSGC	2 cut(s)	156, 708
TfiI	GAWTC	1 cut(s)	512
Tru1I	TTAA	2 cut(s)	677, 720
Tru9I	TTAA	2 cut(s)	677, 720
TscAI	CASTG	2 cut(s)	473, 868
TseI	GCWGC	3 cut(s)	162, 566, 698
TspDTI	ATGAA	5 cut(s)	239, 714, 803, 831, 855
TspRI	CASTG	2 cut(s)	473, 868
VpaK11BI	GGWCC	2 cut(s)	50, 70
XapI	RAATTY	1 cut(s)	211
XceI	RCATGY	2 cut(s)	676, 906
XcmI	CCANNNNNNNNNTGG	1 cut(s)	893
XmiI	GTMKAC	1 cut(s)	11
XspI	CTAG	1 cut(s)	855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.