Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0029118

Physical Location & Seq

Genomic Coordinates Reverse (-)

6349901 .. 6352091

Gene Structure 2191 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G085900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGGAAAGTCTACTCACTGTGTTGCTTCGTCCGGCATGAAGAAAGGTCCATGGACTCCGGCAGAGGACCAAAAGCTCTTAGCTTTCGTTCAAAAACATGGTCATGGAAAATGGCAATCCTTGCCTCAAAAAGCTGGTCTTCAAAGATGCGGGAAGAGCTGCAGGCTAAGATGGAGAAACTACCTACGACCGGATATTAAGAGGGGAAATTTCAGTTTGCAGGAAGACACAACCATCATTCAACTTCACGCTCTTTTAGGCAACAGGTGGTCGGCTATTACTGCGCACTTACCAAAGAGAACAGACAATGAGGTCAAGAACTACTGGCACTCTCGTCTCAAGAAACGACTGGCCTTGAAAGGCTATGACCCTGTAACCCACAAGCCTAAGACTACCATCTTTGGCTTCGCCAATGGTTCAACTGATGACCCAAAGACCGGCTCAAACCTCAACCACATAGCTCAGTGGGAAAGTGCCAGGCTTCAAGCAGAAGCCAGATTTGTGAGAGATTCAGAATTACACAAACAAGCTTATCATCCTTATAACAATAATGATATTTCTGCTGCCTCATCAATATTATTAGGTCATAATAAGGACTTTCGGCCGACTGATCAATTATTTGGACAAAACGCACCGCAATGCCTCGACATATTGAGAGCCTGGGAAAGCATGTTAATGTCAAATTACTCAAAAGCTGCAGGCGGCCAAGATCATGTTAATTCATTTGGTAATCATCTTGCTGGTGATTTCGAGCCTCCGATAATATCTGCAATATCAAGCAATGGATCATCATTGATGGATTGTTTCTTTCATGAACCAGTAGGGCAATGTTTTGATGAAAATTATGGCACTAGTATCACTGAACCATTCGCGACAGTCCACCACAAAAATAATGGAGCATGCTTGGAGGACTTTGGACTTTGGGAAATAATCATGCAAGGGAAAAATGATTGTCCGATATCGGGAATTAGTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

326

Amino Acids

36.39

Weight (kDa)

8.83

Isoelectric Point (pI)

45.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029118)

Species	Orthologous Gene IDs
prunus_persica	Prupe.3G085700_v2.0.a1 Prupe.3G085900_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	543
AasI	GACNNNNNNGTC	1 cut(s)	311
Acc16I	TGCGCA	1 cut(s)	285
AccI	GTMKAC	1 cut(s)	11
AccII	CGCG	1 cut(s)	872
AciI	CCGC	3 cut(s)	150, 635, 702
AclWI	GGATC	1 cut(s)	793
AcoI	YGGCCR	2 cut(s)	602, 703
AcsI	RAATTY	1 cut(s)	208
AfiI	CCNNNNNNNGG	3 cut(s)	190, 437, 962
AgsI	TTSAA	6 cut(s)	92, 143, 242, 358, 420, 485
AhlI	ACTAGT	1 cut(s)	851
AjnI	CCWGG	2 cut(s)	476, 659
AluBI	AGCT	7 cut(s)	76, 83, 134, 159, 461, 530, 695
AluI	AGCT	7 cut(s)	76, 83, 134, 159, 461, 530, 695
Alw26I	GTCTC	1 cut(s)	341
AlwI	GGATC	1 cut(s)	793
AoxI	GGCC	3 cut(s)	351, 602, 703
ApeKI	GCWGC	3 cut(s)	159, 563, 695
ApoI	RAATTY	1 cut(s)	208
ArsI	GACNNNNNNTTYG	4 cut(s)	85, 117, 121, 153
AspLEI	GCGC	1 cut(s)	286
AspS9I	GGNCC	2 cut(s)	47, 67
AsuHPI	GGTGA	1 cut(s)	755
AvaII	GGWCC	2 cut(s)	47, 67
BbsI	GAAGAC	2 cut(s)	131, 231
BbvI	GCAGC	3 cut(s)	146, 550, 682
BccI	CCATC	4 cut(s)	165, 242, 404, 790
BciT130I	CCWGG	2 cut(s)	478, 661
BclI	TGATCA	1 cut(s)	610
BcoDI	GTCTC	1 cut(s)	341
BcuI	ACTAGT	1 cut(s)	851
BfaI	CTAG	1 cut(s)	852
BfmI	CTRYAG	2 cut(s)	160, 696
BisI	GCNGC	4 cut(s)	160, 564, 696, 703
BlsI	GCNGC	4 cut(s)	161, 565, 697, 704
Bme1390I	CCNGG	2 cut(s)	478, 661
Bme18I	GGWCC	2 cut(s)	47, 67
BmgT120I	GGNCC	2 cut(s)	47, 67
BmrFI	CCNGG	2 cut(s)	478, 661
BmsI	GCATC	1 cut(s)	137
BpiI	GAAGAC	2 cut(s)	131, 231
BpuEI	CTTGAG	1 cut(s)	323
BsaJI	CCNNGG	2 cut(s)	50, 660
BsaWI	WCCGGW	1 cut(s)	190
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 437, 962
Bse118I	RCCGGY	1 cut(s)	437
Bse1I	ACTGG	3 cut(s)	329, 354, 818
Bse3DI	GCAATG	3 cut(s)	644, 787, 833
BseBI	CCWGG	2 cut(s)	478, 661
BseDI	CCNNGG	2 cut(s)	50, 660
BseGI	GGATG	1 cut(s)	535
BseLI	CCNNNNNNNGG	3 cut(s)	190, 437, 962
BseMI	GCAATG	3 cut(s)	644, 787, 833
BseMII	CTCAG	1 cut(s)	476
BseNI	ACTGG	3 cut(s)	329, 354, 818
BseX3I	CGGCCG	1 cut(s)	602
BseXI	GCAGC	3 cut(s)	146, 550, 682
Bsh1236I	CGCG	1 cut(s)	872
Bsh1285I	CGRYCG	2 cut(s)	191, 605
BshFI	GGCC	3 cut(s)	353, 604, 705
BsiEI	CGRYCG	2 cut(s)	191, 605
BsiSI	CCGG	4 cut(s)	33, 59, 191, 438
BslI	CCNNNNNNNGG	3 cut(s)	190, 437, 962
BsmAI	GTCTC	1 cut(s)	341
BsmBI	CGTCTC	1 cut(s)	341
BsnI	GGCC	3 cut(s)	353, 604, 705
Bsp143I	GATC	3 cut(s)	610, 709, 785
Bsp19I	CCATGG	1 cut(s)	50
Bsp68I	TCGCGA	1 cut(s)	872
BspACI	CCGC	3 cut(s)	150, 635, 702
BspANI	GGCC	3 cut(s)	353, 604, 705
BspCNI	CTCAG	1 cut(s)	475
BspFNI	CGCG	1 cut(s)	872
BspHI	TCATGA	1 cut(s)	811
BspMAI	CTGCAG	2 cut(s)	164, 700
BspPI	GGATC	1 cut(s)	793
BspQI	GCTCTTC	1 cut(s)	149
BsrDI	GCAATG	3 cut(s)	644, 787, 833
BsrFI	RCCGGY	1 cut(s)	437
BsrI	ACTGG	3 cut(s)	329, 354, 818
BssAI	RCCGGY	1 cut(s)	437
BssECI	CCNNGG	2 cut(s)	50, 660
BssMI	GATC	3 cut(s)	610, 709, 785
BssT1I	CCWWGG	1 cut(s)	50
Bst2UI	CCWGG	2 cut(s)	478, 661
Bst4CI	ACNGT	2 cut(s)	20, 877
Bst6I	CTCTTC	1 cut(s)	149
BstAPI	GCANNNNNTGC	1 cut(s)	121
BstC8I	GCNNGC	3 cut(s)	164, 700, 901
BstDEI	CTNAG	4 cut(s)	79, 167, 387, 462
BstDSI	CCRYGG	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	535
BstFNI	CGCG	1 cut(s)	872
BstHHI	GCGC	1 cut(s)	286
BstKTI	GATC	3 cut(s)	613, 712, 788
BstMAI	GTCTC	1 cut(s)	341
BstMBI	GATC	3 cut(s)	610, 709, 785
BstMCI	CGRYCG	2 cut(s)	191, 605
BstMWI	GCNNNNNNNGC	3 cut(s)	121, 156, 281
BstNI	CCWGG	2 cut(s)	478, 661
BstNSI	RCATGY	2 cut(s)	673, 903
BstSCI	CCNGG	2 cut(s)	476, 659
BstSFI	CTRYAG	2 cut(s)	160, 696
BstUI	CGCG	1 cut(s)	872
BstV1I	GCAGC	3 cut(s)	146, 550, 682
BstV2I	GAAGAC	2 cut(s)	131, 231
BstZI	CGGCCG	1 cut(s)	602
BsuRI	GGCC	3 cut(s)	353, 604, 705
BtgI	CCRYGG	1 cut(s)	50
BtsCI	GGATG	1 cut(s)	535
BtsIMutI	CAGTG	3 cut(s)	16, 470, 858
BtuMI	TCGCGA	1 cut(s)	872
Cac8I	GCNNGC	3 cut(s)	164, 700, 901
CciI	TCATGA	1 cut(s)	811
CfoI	GCGC	1 cut(s)	286
Cfr10I	RCCGGY	1 cut(s)	437
Cfr13I	GGNCC	2 cut(s)	47, 67
CviAII	CATG	9 cut(s)	37, 51, 98, 104, 670, 713, 812, 900, 934
DdeI	CTNAG	4 cut(s)	79, 167, 387, 462
DpnI	GATC	3 cut(s)	612, 711, 787
DpnII	GATC	3 cut(s)	610, 709, 785
DrdI	GACNNNNNNGTC	1 cut(s)	311
DseDI	GACNNNNNNGTC	1 cut(s)	311
EaeI	YGGCCR	2 cut(s)	602, 703
EagI	CGGCCG	1 cut(s)	602
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
EclXI	CGGCCG	1 cut(s)	602
Eco130I	CCWWGG	1 cut(s)	50
Eco32I	GATATC	1 cut(s)	960
Eco47I	GGWCC	2 cut(s)	47, 67
Eco52I	CGGCCG	1 cut(s)	602
EcoRII	CCWGG	2 cut(s)	476, 659
EcoRV	GATATC	1 cut(s)	960
EcoT14I	CCWWGG	1 cut(s)	50
ErhI	CCWWGG	1 cut(s)	50
Esp3I	CGTCTC	1 cut(s)	341
FaeI	CATG	9 cut(s)	40, 54, 101, 107, 673, 716, 815, 903, 937
FalI	AAGNNNNNCTT	2 cut(s)	123, 155
FatI	CATG	9 cut(s)	36, 50, 97, 103, 669, 712, 811, 899, 933
FauI	CCCGC	1 cut(s)	143
FbaI	TGATCA	1 cut(s)	610
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	4 cut(s)	160, 564, 696, 703
FokI	GGATG	1 cut(s)	522
Fsp4HI	GCNGC	4 cut(s)	160, 564, 696, 703
FspBI	CTAG	1 cut(s)	852
FspI	TGCGCA	1 cut(s)	285
GlaI	GCGC	1 cut(s)	285
GluI	GCNGC	4 cut(s)	160, 564, 696, 703
HaeIII	GGCC	3 cut(s)	353, 604, 705
HapII	CCGG	4 cut(s)	33, 59, 191, 438
HhaI	GCGC	1 cut(s)	286
Hin1II	CATG	9 cut(s)	40, 54, 101, 107, 673, 716, 815, 903, 937
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
HindIII	AAGCTT	1 cut(s)	528
HinfI	GANTC	2 cut(s)	55, 509
HpaII	CCGG	4 cut(s)	33, 59, 191, 438
HphI	GGTGA	1 cut(s)	755
Hpy166II	GTNNAC	2 cut(s)	12, 880
Hpy188I	TCNGA	3 cut(s)	514, 759, 957
Hpy188III	TCNNGA	5 cut(s)	316, 340, 812, 871, 963
Hpy8I	GTNNAC	2 cut(s)	12, 880
HpyCH4III	ACNGT	2 cut(s)	20, 877
HpyCH4V	TGCA	5 cut(s)	162, 220, 698, 770, 937
HpyF10VI	GCNNNNNNNGC	3 cut(s)	121, 156, 281
HpyF3I	CTNAG	4 cut(s)	79, 167, 387, 462
Hsp92II	CATG	9 cut(s)	40, 54, 101, 107, 673, 716, 815, 903, 937
HspAI	GCGC	1 cut(s)	284
Ksp22I	TGATCA	1 cut(s)	610
Kzo9I	GATC	3 cut(s)	610, 709, 785
LguI	GCTCTTC	1 cut(s)	149
LmnI	GCTCC	1 cut(s)	896
Lsp1109I	GCAGC	3 cut(s)	146, 550, 682
LweI	GCATC	1 cut(s)	137
MaeI	CTAG	1 cut(s)	852
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	3 cut(s)	612, 711, 787
MboI	GATC	3 cut(s)	610, 709, 785
MboII	GAAGA	4 cut(s)	52, 131, 166, 236
MluCI	AATT	7 cut(s)	208, 515, 614, 682, 718, 841, 966
MlyI	GAGTC	1 cut(s)	49
MnlI	CCTC	9 cut(s)	58, 135, 195, 304, 458, 577, 653, 765, 901
MseI	TTAA	3 cut(s)	198, 674, 717
MslI	CAYNNNNRTG	3 cut(s)	102, 637, 674
MspI	CCGG	4 cut(s)	33, 59, 191, 438
MspR9I	CCNGG	2 cut(s)	478, 661
MvaI	CCWGG	2 cut(s)	478, 661
MvnI	CGCG	1 cut(s)	872
MwoI	GCNNNNNNNGC	3 cut(s)	121, 156, 281
NcoI	CCATGG	1 cut(s)	50
NdeII	GATC	3 cut(s)	610, 709, 785
NlaIII	CATG	9 cut(s)	40, 54, 101, 107, 673, 716, 815, 903, 937
NruI	TCGCGA	1 cut(s)	872
NsbI	TGCGCA	1 cut(s)	285
NspI	RCATGY	2 cut(s)	673, 903
PaeI	GCATGC	1 cut(s)	903
PagI	TCATGA	1 cut(s)	811
PciSI	GCTCTTC	1 cut(s)	149
PfeI	GAWTC	1 cut(s)	509
PkrI	GCNGC	4 cut(s)	161, 565, 697, 704
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PsiI	TTATAA	1 cut(s)	543
Psp6I	CCWGG	2 cut(s)	476, 659
PspGI	CCWGG	2 cut(s)	476, 659
PspPI	GGNCC	2 cut(s)	47, 67
PstI	CTGCAG	2 cut(s)	164, 700
RruI	TCGCGA	1 cut(s)	872
RseI	CAYNNNNRTG	3 cut(s)	102, 637, 674
SapI	GCTCTTC	1 cut(s)	149
SaqAI	TTAA	3 cut(s)	198, 674, 717
SatI	GCNGC	4 cut(s)	160, 564, 696, 703
Sau3AI	GATC	3 cut(s)	610, 709, 785
Sau96I	GGNCC	2 cut(s)	47, 67
SchI	GAGTC	1 cut(s)	49
ScrFI	CCNGG	2 cut(s)	478, 661
SfaNI	GCATC	1 cut(s)	137
SfcI	CTRYAG	2 cut(s)	160, 696
SinI	GGWCC	2 cut(s)	47, 67
SmiMI	CAYNNNNRTG	3 cut(s)	102, 637, 674
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
SpeI	ACTAGT	1 cut(s)	851
SphI	GCATGC	1 cut(s)	903
Sse9I	AATT	7 cut(s)	208, 515, 614, 682, 718, 841, 966
SsiI	CCGC	3 cut(s)	150, 635, 702
SspI	AATATT	1 cut(s)	576
SspMI	CTAG	1 cut(s)	852
StyD4I	CCNGG	2 cut(s)	476, 659
StyI	CCWWGG	1 cut(s)	50
TaaI	ACNGT	2 cut(s)	20, 877
TaqI	TCGA	2 cut(s)	645, 750
TasI	AATT	7 cut(s)	208, 515, 614, 682, 718, 841, 966
TauI	GCSGC	1 cut(s)	705
TfiI	GAWTC	1 cut(s)	509
Tru1I	TTAA	3 cut(s)	198, 674, 717
Tru9I	TTAA	3 cut(s)	198, 674, 717
TscAI	CASTG	3 cut(s)	23, 470, 865
TseI	GCWGC	3 cut(s)	159, 563, 695
TspDTI	ATGAA	5 cut(s)	53, 711, 800, 828, 852
TspRI	CASTG	3 cut(s)	23, 470, 865
VpaK11BI	GGWCC	2 cut(s)	47, 67
XapI	RAATTY	1 cut(s)	208
XceI	RCATGY	2 cut(s)	673, 903
XcmI	CCANNNNNNNNNTGG	1 cut(s)	890
XmiI	GTMKAC	1 cut(s)	11
XspI	CTAG	1 cut(s)	852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.