Prupe.3G111100_v2.0.a1

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
9194257 .. 9194632
376 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G111100.1

Sequence Viewer

Length: 282 bp
ATGAATGTGATACTGGTTTATATTGCAGGTATGGATGAGTTTAATAATCCCAAATTATCACTTAAGCAAGCCCTTGATGATGCTAATCGAATTGATTATTACTATCGCCACCTATGTTACCTCCAAGCAGCAATTAAGGAGGGTGCTAATGTGCAAGGATACTTTGCATGGTCATTGCTAGACAACTTTGAATGGAGAGATGGATACACTATTTGGTTTGGTATCAACTATATTGATTACCACAATGGACTGGAAAGACACTCAAAACTCTCGACACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

94

Amino Acids

11.01

Weight (kDa)

5.68

Isoelectric Point (pI)

12.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029010)

Species Orthologous Gene IDs
prunus_persica Prupe.3G111100_v2.0.a1 Prupe.6G019800_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 17
AflII CTTAAG 1 cut(s) 62
AgsI TTSAA 1 cut(s) 191
ApeKI GCWGC 1 cut(s) 128
BbvI GCAGC 1 cut(s) 140
BccI CCATC 1 cut(s) 194
BciVI GTATCC 2 cut(s) 152, 197
BfaI CTAG 2 cut(s) 179, 280
BfrI CTTAAG 1 cut(s) 62
BfuAI ACCTGC 1 cut(s) 17
BfuI GTATCC 2 cut(s) 152, 197
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
BmsI GCATC 1 cut(s) 70
BsaBI GATNNNNATC 1 cut(s) 84
Bse1I ACTGG 2 cut(s) 18, 255
Bse3DI GCAATG 1 cut(s) 173
Bse8I GATNNNNATC 1 cut(s) 84
BseGI GGATG 1 cut(s) 40
BseJI GATNNNNATC 1 cut(s) 84
BseMI GCAATG 1 cut(s) 173
BseNI ACTGG 2 cut(s) 18, 255
BseXI GCAGC 1 cut(s) 140
BspMI ACCTGC 1 cut(s) 17
BspTI CTTAAG 1 cut(s) 62
BsrDI GCAATG 1 cut(s) 173
BsrI ACTGG 2 cut(s) 18, 255
BstAFI CTTAAG 1 cut(s) 62
BstC8I GCNNGC 1 cut(s) 69
BstF5I GGATG 1 cut(s) 40
BstV1I GCAGC 1 cut(s) 140
BsuI GTATCC 2 cut(s) 152, 197
BtsCI GGATG 1 cut(s) 40
BveI ACCTGC 1 cut(s) 17
Cac8I GCNNGC 1 cut(s) 69
CviAII CATG 1 cut(s) 168
CviJI RGCY 1 cut(s) 71
CviKI_1 RGCY 1 cut(s) 71
FaeI CATG 1 cut(s) 171
FaiI YATR 5 cut(s) 21, 32, 115, 169, 231
FatI CATG 1 cut(s) 167
Fnu4HI GCNGC 1 cut(s) 129
FokI GGATG 1 cut(s) 47
Fsp4HI GCNGC 1 cut(s) 129
FspBI CTAG 2 cut(s) 179, 280
GluI GCNGC 1 cut(s) 129
Hin1II CATG 1 cut(s) 171
Hpy188III TCNNGA 1 cut(s) 271
HpyCH4V TGCA 3 cut(s) 26, 154, 167
Hsp92II CATG 1 cut(s) 171
LpnPI CCDG 2 cut(s) 12, 236
Lsp1109I GCAGC 1 cut(s) 140
LweI GCATC 1 cut(s) 70
MaeI CTAG 2 cut(s) 179, 280
MaeIII GTNAC 1 cut(s) 116
MluCI AATT 3 cut(s) 53, 90, 132
MnlI CCTC 2 cut(s) 131, 133
MseI TTAA 3 cut(s) 42, 63, 135
MspCI CTTAAG 1 cut(s) 62
NlaIII CATG 1 cut(s) 171
PkrI GCNGC 1 cut(s) 130
SaqAI TTAA 3 cut(s) 42, 63, 135
SatI GCNGC 1 cut(s) 129
SetI ASST 3 cut(s) 31, 114, 123
SfaNI GCATC 1 cut(s) 70
SgeI CNNG 9 cut(s) 26, 39, 80, 86, 137, 167, 180, 191, 263
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
Sse9I AATT 3 cut(s) 53, 90, 132
SspMI CTAG 2 cut(s) 179, 280
TaqI TCGA 2 cut(s) 88, 272
TasI AATT 3 cut(s) 53, 90, 132
Tru1I TTAA 3 cut(s) 42, 63, 135
Tru9I TTAA 3 cut(s) 42, 63, 135
TseI GCWGC 1 cut(s) 128
TspDTI ATGAA 1 cut(s) 17
Vha464I CTTAAG 1 cut(s) 62
XspI CTAG 2 cut(s) 179, 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.