Prupe.6G019800_v2.0.a1

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
1564105 .. 1566175
2071 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G019800.1

Sequence Viewer

Length: 252 bp
ATGGATGAGTTTAATAATCCCAAATTATCACTTAAGCAAGCCCTTGATGATGCTAATCGAATTGATTATTACTATCGCCACCTATGTTACCTCCAAGCAGCAATTAAGGAGGGTGCTAATGTGCAGGGATACTTTGCATGGTCATTGCTAGACAACTTTGAATGGAGAGATGGATACACTATTTGGTTTGGTATCAACTATATTGATTACGACAATGGACTGGAAAGACACTCAAAACTCTCGACACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

84

Amino Acids

9.92

Weight (kDa)

5.11

Isoelectric Point (pI)

10.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0029010)

Species Orthologous Gene IDs
prunus_persica Prupe.3G111100_v2.0.a1 Prupe.6G019800_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AflII CTTAAG 1 cut(s) 32
AgsI TTSAA 1 cut(s) 161
ApeKI GCWGC 1 cut(s) 98
BbvI GCAGC 1 cut(s) 110
BccI CCATC 1 cut(s) 164
BciVI GTATCC 2 cut(s) 122, 167
BfaI CTAG 2 cut(s) 149, 250
BfrI CTTAAG 1 cut(s) 32
BfuI GTATCC 2 cut(s) 122, 167
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
BmsI GCATC 1 cut(s) 40
BsaBI GATNNNNATC 1 cut(s) 54
Bse1I ACTGG 1 cut(s) 225
Bse3DI GCAATG 1 cut(s) 143
Bse8I GATNNNNATC 1 cut(s) 54
BseGI GGATG 1 cut(s) 10
BseJI GATNNNNATC 1 cut(s) 54
BseMI GCAATG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 225
BseXI GCAGC 1 cut(s) 110
BsgI GTGCAG 1 cut(s) 143
BspTI CTTAAG 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 143
BsrI ACTGG 1 cut(s) 225
BstAFI CTTAAG 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 39
BstF5I GGATG 1 cut(s) 10
BstV1I GCAGC 1 cut(s) 110
BsuI GTATCC 2 cut(s) 122, 167
BtsCI GGATG 1 cut(s) 10
Cac8I GCNNGC 1 cut(s) 39
CviAII CATG 1 cut(s) 138
CviJI RGCY 1 cut(s) 41
CviKI_1 RGCY 1 cut(s) 41
FaeI CATG 1 cut(s) 141
FaiI YATR 3 cut(s) 85, 139, 201
FatI CATG 1 cut(s) 137
Fnu4HI GCNGC 1 cut(s) 99
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 99
FspBI CTAG 2 cut(s) 149, 250
GluI GCNGC 1 cut(s) 99
Hin1II CATG 1 cut(s) 141
Hpy188III TCNNGA 1 cut(s) 241
HpyCH4V TGCA 2 cut(s) 124, 137
Hsp92II CATG 1 cut(s) 141
LpnPI CCDG 2 cut(s) 110, 206
Lsp1109I GCAGC 1 cut(s) 110
LweI GCATC 1 cut(s) 40
MaeI CTAG 2 cut(s) 149, 250
MaeIII GTNAC 1 cut(s) 86
MluCI AATT 3 cut(s) 23, 60, 102
MnlI CCTC 2 cut(s) 101, 103
MseI TTAA 3 cut(s) 12, 33, 105
MspCI CTTAAG 1 cut(s) 32
NlaIII CATG 1 cut(s) 141
PkrI GCNGC 1 cut(s) 100
SaqAI TTAA 3 cut(s) 12, 33, 105
SatI GCNGC 1 cut(s) 99
SetI ASST 2 cut(s) 84, 93
SfaNI GCATC 1 cut(s) 40
SgeI CNNG 7 cut(s) 50, 56, 107, 137, 150, 161, 233
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 3 cut(s) 23, 60, 102
SspMI CTAG 2 cut(s) 149, 250
TaqI TCGA 2 cut(s) 58, 242
TasI AATT 3 cut(s) 23, 60, 102
Tru1I TTAA 3 cut(s) 12, 33, 105
Tru9I TTAA 3 cut(s) 12, 33, 105
TseI GCWGC 1 cut(s) 98
Vha464I CTTAAG 1 cut(s) 32
XspI CTAG 2 cut(s) 149, 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.