Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0024582

Physical Location & Seq

Genomic Coordinates Forward (+)

9635260 .. 9635554

Gene Structure 295 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G114400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGGAAAAGATGGAGGAGAAAGGCAACTATGTTGCAAGGAGAAAGGGAGGTTTGGTCACCATGCCCTTCATCTTTGCTAATGAGATTTGTGAGAAGTTGGCTGTGGTGGGTTTCAATGCTAATATGATTAGCTACTTGACAACACAACTTCATATGCCAGCGACGACTAAACCAAGCACAGAGACCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0008150 GO:0010336 GO:0016020 GO:0031982 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044464 GO:0048878 GO:0050801 GO:0055081 GO:0055088 GO:0065007 GO:0065008 GO:0071944 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

64

Amino Acids

7.04

Weight (kDa)

7.89

Isoelectric Point (pI)

50.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024582)

Species	Orthologous Gene IDs
prunus_persica	Prupe.3G114400_v2.0.a1
rosa_multiflora	Rmu_sc0001940.1_g000020 Rmu_sc0001940.1_g000021

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	115
AluBI	AGCT	1 cut(s)	132
AluI	AGCT	1 cut(s)	132
Alw26I	GTCTC	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	49
BccI	CCATC	1 cut(s)	4
BcoDI	GTCTC	1 cut(s)	176
BsaI	GGTCTC	1 cut(s)	176
BsaXI	ACNNNNNCTCC	2 cut(s)	39, 69
BseRI	GAGGAG	1 cut(s)	29
BsmAI	GTCTC	1 cut(s)	176
Bso31I	GGTCTC	1 cut(s)	176
BspTNI	GGTCTC	1 cut(s)	176
Bst4CI	ACNGT	1 cut(s)	187
BstC8I	GCNNGC	1 cut(s)	159
BstEII	GGTNACC	1 cut(s)	55
BstMAI	GTCTC	1 cut(s)	176
BstPI	GGTNACC	1 cut(s)	55
Cac8I	GCNNGC	1 cut(s)	159
CviAII	CATG	1 cut(s)	61
CviJI	RGCY	2 cut(s)	101, 132
CviKI_1	RGCY	2 cut(s)	101, 132
Eco31I	GGTCTC	1 cut(s)	176
Eco91I	GGTNACC	1 cut(s)	55
EcoO65I	GGTNACC	1 cut(s)	55
FaeI	CATG	1 cut(s)	64
FaiI	YATR	5 cut(s)	30, 62, 125, 153, 155
FatI	CATG	1 cut(s)	60
FauNDI	CATATG	1 cut(s)	153
Hin1II	CATG	1 cut(s)	64
HphI	GGTGA	1 cut(s)	49
Hpy99I	CGWCG	1 cut(s)	166
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4V	TGCA	1 cut(s)	35
Hsp92II	CATG	1 cut(s)	64
LpnPI	CCDG	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	55
MnlI	CCTC	2 cut(s)	7, 41
NdeI	CATATG	1 cut(s)	153
NlaIII	CATG	1 cut(s)	64
NmuCI	GTSAC	1 cut(s)	55
PspEI	GGTNACC	1 cut(s)	55
SetI	ASST	2 cut(s)	52, 134
SgeI	CNNG	5 cut(s)	48, 73, 148, 170, 186
TaaI	ACNGT	1 cut(s)	187
TseFI	GTSAC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	58, 140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.