Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001940.1

Orthogroup ID

OG0024582

Physical Location & Seq

Genomic Coordinates Forward (+)

70153 .. 70571

Gene Structure 419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001940.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

atggaaaagatggaggagaaagataatcatgtccatgctacgacgaaaagaggaggcttgcgcaccatgccattcatctttgctaatgaggttacagagaagttggctgtggtgggattcaatgcgaacatgttgaactacttgacaacgcagatgcatatgccgttaacaaaagcagcgaacaccgtcaccaacttcagcggcactgctagcttgtcccctttgctcggtgctttcatggccgatgcttacgccggacgcttctggactataacaattgcctccattatttacaccgttgtaattaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0008150 GO:0010336 GO:0016020 GO:0031982 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044464 GO:0048878 GO:0050801 GO:0055081 GO:0055088 GO:0065007 GO:0065008 GO:0071944 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

103

Amino Acids

11.36

Weight (kDa)

8.09

Isoelectric Point (pI)

34.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024582)

Species	Orthologous Gene IDs
prunus_persica	Prupe.3G114400_v2.0.a1
rosa_multiflora	Rmu_sc0001940.1_g000020 Rmu_sc0001940.1_g000021

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	62
AciI	CCGC	1 cut(s)	201
AcoI	YGGCCR	1 cut(s)	240
AcuI	CTGAAG	1 cut(s)	181
AfiI	CCNNNNNNNGG	1 cut(s)	227
AflIII	ACRYGT	1 cut(s)	129
AgsI	TTSAA	2 cut(s)	121, 136
AluBI	AGCT	1 cut(s)	213
AluI	AGCT	1 cut(s)	213
AoxI	GGCC	1 cut(s)	240
ApeKI	GCWGC	1 cut(s)	176
AspLEI	GCGC	1 cut(s)	63
AsuHPI	GGTGA	1 cut(s)	181
AsuNHI	GCTAGC	1 cut(s)	209
BbvI	GCAGC	1 cut(s)	188
BccI	CCATC	1 cut(s)	4
BceAI	ACGGC	1 cut(s)	148
BfaI	CTAG	1 cut(s)	210
BisI	GCNGC	2 cut(s)	177, 202
BlsI	GCNGC	2 cut(s)	178, 203
BmsI	GCATC	2 cut(s)	144, 235
BmtI	GCTAGC	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseRI	GAGGAG	2 cut(s)	29, 66
BseXI	GCAGC	1 cut(s)	188
BshFI	GGCC	1 cut(s)	242
BsiSI	CCGG	1 cut(s)	255
BslFI	GGGAC	1 cut(s)	202
BslI	CCNNNNNNNGG	1 cut(s)	227
BsmFI	GGGAC	1 cut(s)	202
BsnI	GGCC	1 cut(s)	242
BspACI	CCGC	1 cut(s)	201
BspANI	GGCC	1 cut(s)	242
BspOI	GCTAGC	1 cut(s)	213
Bst4CI	ACNGT	2 cut(s)	187, 298
BstC8I	GCNNGC	2 cut(s)	59, 211
BstHHI	GCGC	1 cut(s)	63
BstMWI	GCNNNNNNNGC	3 cut(s)	67, 210, 239
BstNSI	RCATGY	1 cut(s)	133
BstV1I	GCAGC	1 cut(s)	188
BsuRI	GGCC	1 cut(s)	242
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	2 cut(s)	59, 211
CfoI	GCGC	1 cut(s)	63
CseI	GACGC	1 cut(s)	267
CviAII	CATG	5 cut(s)	29, 35, 67, 130, 238
CviJI	RGCY	4 cut(s)	57, 107, 213, 242
CviKI_1	RGCY	4 cut(s)	57, 107, 213, 242
EaeI	YGGCCR	1 cut(s)	240
Eco57I	CTGAAG	1 cut(s)	181
EcoT22I	ATGCAT	1 cut(s)	159
FaeI	CATG	5 cut(s)	32, 38, 70, 133, 241
FaiI	YATR	8 cut(s)	30, 36, 68, 131, 159, 161, 239, 272
FaqI	GGGAC	1 cut(s)	202
FatI	CATG	5 cut(s)	28, 34, 66, 129, 237
FauNDI	CATATG	1 cut(s)	159
Fnu4HI	GCNGC	2 cut(s)	177, 202
Fsp4HI	GCNGC	2 cut(s)	177, 202
FspBI	CTAG	1 cut(s)	210
FspI	TGCGCA	1 cut(s)	62
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	2 cut(s)	177, 202
HaeIII	GGCC	1 cut(s)	242
HapII	CCGG	1 cut(s)	255
HgaI	GACGC	1 cut(s)	267
HhaI	GCGC	1 cut(s)	63
Hin1II	CATG	5 cut(s)	32, 38, 70, 133, 241
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HincII	GTYRAC	1 cut(s)	168
HindII	GTYRAC	1 cut(s)	168
HinfI	GANTC	1 cut(s)	117
HpaI	GTTAAC	1 cut(s)	168
HpaII	CCGG	1 cut(s)	255
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	1 cut(s)	168
Hpy188III	TCNNGA	1 cut(s)	265
Hpy8I	GTNNAC	1 cut(s)	168
Hpy99I	CGWCG	1 cut(s)	46
HpyCH4III	ACNGT	2 cut(s)	187, 298
HpyCH4V	TGCA	1 cut(s)	157
HpyF10VI	GCNNNNNNNGC	3 cut(s)	67, 210, 239
Hsp92II	CATG	5 cut(s)	32, 38, 70, 133, 241
HspAI	GCGC	1 cut(s)	61
KspAI	GTTAAC	1 cut(s)	168
LpnPI	CCDG	2 cut(s)	250, 268
Lsp1109I	GCAGC	1 cut(s)	188
LweI	GCATC	2 cut(s)	144, 235
MaeI	CTAG	1 cut(s)	210
MaeIII	GTNAC	2 cut(s)	91, 187
MfeI	CAATTG	1 cut(s)	276
MluCI	AATT	2 cut(s)	276, 303
MnlI	CCTC	5 cut(s)	7, 44, 47, 82, 292
Mph1103I	ATGCAT	1 cut(s)	159
MseI	TTAA	2 cut(s)	167, 306
MslI	CAYNNNNRTG	1 cut(s)	33
MspA1I	CMGCKG	1 cut(s)	201
MspI	CCGG	1 cut(s)	255
MunI	CAATTG	1 cut(s)	276
MwoI	GCNNNNNNNGC	3 cut(s)	67, 210, 239
NdeI	CATATG	1 cut(s)	159
NheI	GCTAGC	1 cut(s)	209
NlaIII	CATG	5 cut(s)	32, 38, 70, 133, 241
NmuCI	GTSAC	1 cut(s)	187
NsbI	TGCGCA	1 cut(s)	62
NsiI	ATGCAT	1 cut(s)	159
NspI	RCATGY	1 cut(s)	133
PciI	ACATGT	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	117
PkrI	GCNGC	2 cut(s)	178, 203
PscI	ACATGT	1 cut(s)	129
RseI	CAYNNNNRTG	1 cut(s)	33
SaqAI	TTAA	2 cut(s)	167, 306
SatI	GCNGC	2 cut(s)	177, 202
SetI	ASST	2 cut(s)	93, 215
SfaNI	GCATC	2 cut(s)	144, 235
SmiMI	CAYNNNNRTG	1 cut(s)	33
Sse9I	AATT	2 cut(s)	276, 303
SsiI	CCGC	1 cut(s)	201
SspMI	CTAG	1 cut(s)	210
TaaI	ACNGT	2 cut(s)	187, 298
TasI	AATT	2 cut(s)	276, 303
TauI	GCSGC	1 cut(s)	204
TfiI	GAWTC	1 cut(s)	117
Tru1I	TTAA	2 cut(s)	167, 306
Tru9I	TTAA	2 cut(s)	167, 306
TscAI	CASTG	1 cut(s)	211
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	1 cut(s)	176
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	2 cut(s)	64, 226
TspRI	CASTG	1 cut(s)	211
XceI	RCATGY	1 cut(s)	133
XspI	CTAG	1 cut(s)	210
Zsp2I	ATGCAT	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.