Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0029122

Physical Location & Seq

Genomic Coordinates Forward (+)

10185161 .. 10186319

Gene Structure 1159 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G118400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGAGTATGGCCGGATGAACATTGGGAGTCGTCCTTCAAAACGAAAGCCAAGTGGAGGCATTGAATCACTACGTGCAATCCCATGGATATTTGCTTGGACCCAAACAAGATTTCATTTACCAGTGTGGCTTGGGTTTGGGGCAGCATTTAAGCATGCTATTGACAAGGATGCGAAAAATCTCCATATGCTTCGAGAGATGTATAATCAGTGGCCTTTCTTCAGAGTGTCGATTGATTTAATTGAGATGGTGTTTGCCAAGGGCGACCCGGGTATTGCCTCTCTGTATGACAAGCTGCTTGTGTCAGAAGACCTATGGTCATTTGGAGAGAGATTGAGGGCCAACTATGAAGAAACTAAGAGCCTCGTCCTCCAGGTTGCTGGACATAGGGCTCTTCTGGAAGGAGATCCTTATTTAAGGCAGAGACTCCTCCTCCGTGACTCTTACATCACCACACTTAATGTGTGCCAAGCCTATACACTGAAGCAGATTCGTGATCCGAACTACCATGTTAAAGTAAGGCCACACTTGTCAAAGGAGTACATGGAAACAACAAGCAAGCCAGCGGCAGAGCTCGTAAAGCTTAATCCAACAAGCGAGTATGCTCCTGGACTAGAAGACACACTTATTTTGACCATGAAGGGTATTGCTGCTGGAATGCAGAATACCGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0007275 GO:0008150 GO:0008152 GO:0008964 GO:0009506 GO:0009507 GO:0009536 GO:0015977 GO:0016020 GO:0016829 GO:0016830 GO:0016831 GO:0030054 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055044 GO:0071704 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

225

Amino Acids

25.62

Weight (kDa)

9.21

Isoelectric Point (pI)

37.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029122)

Species	Orthologous Gene IDs
prunus_persica	Prupe.3G118400_v2.0.a1
rosa_multiflora	Rmu_co8210258.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	566
AclWI	GGATC	2 cut(s)	401, 491
AcoI	YGGCCR	1 cut(s)	10
AcuI	CTGAAG	2 cut(s)	205, 503
AdeI	CACNNNGTG	1 cut(s)	74
AfaI	GTAC	1 cut(s)	542
AfiI	CCNNNNNNNGG	1 cut(s)	56
AgsI	TTSAA	2 cut(s)	39, 65
AhdI	GACNNNNNGTC	1 cut(s)	316
AjnI	CCWGG	2 cut(s)	372, 607
AjuI	GAANNNNNNNTTGG	2 cut(s)	96, 128
AluBI	AGCT	3 cut(s)	295, 574, 583
AluI	AGCT	3 cut(s)	295, 574, 583
Alw21I	GWGCWC	1 cut(s)	576
Alw26I	GTCTC	1 cut(s)	418
AlwI	GGATC	2 cut(s)	401, 491
Ama87I	CYCGRG	1 cut(s)	268
AoxI	GGCC	4 cut(s)	10, 212, 339, 521
ApeKI	GCWGC	3 cut(s)	143, 295, 650
AspS9I	GGNCC	2 cut(s)	99, 339
AsuC2I	CCSGG	2 cut(s)	269, 270
AsuHPI	GGTGA	1 cut(s)	442
AvaI	CYCGRG	1 cut(s)	268
AvaII	GGWCC	1 cut(s)	99
BanII	GRGCYC	2 cut(s)	394, 576
BbsI	GAAGAC	2 cut(s)	315, 624
Bbv12I	GWGCWC	1 cut(s)	576
BbvI	GCAGC	3 cut(s)	155, 282, 637
BccI	CCATC	1 cut(s)	241
BciT130I	CCWGG	2 cut(s)	374, 609
BcnI	CCSGG	2 cut(s)	269, 270
BcoDI	GTCTC	1 cut(s)	418
BfaI	CTAG	1 cut(s)	614
BisI	GCNGC	4 cut(s)	144, 296, 567, 651
BlsI	GCNGC	4 cut(s)	145, 297, 568, 652
Bme1390I	CCNGG	4 cut(s)	269, 270, 374, 609
Bme18I	GGWCC	1 cut(s)	99
BmeRI	GACNNNNNGTC	1 cut(s)	316
BmeT110I	CYCGRG	1 cut(s)	268
BmgT120I	GGNCC	2 cut(s)	99, 339
BmiI	GGNNCC	1 cut(s)	101
BmrFI	CCNGG	4 cut(s)	269, 270, 374, 609
BmsI	GCATC	1 cut(s)	160
BpiI	GAAGAC	2 cut(s)	315, 624
BpmI	CTGGAG	1 cut(s)	356
BpuMI	CCSGG	2 cut(s)	269, 270
BsaAI	YACGTR	1 cut(s)	74
BsaJI	CCNNGG	3 cut(s)	83, 258, 268
BsaXI	ACNNNNNCTCC	2 cut(s)	417, 447
Bsc4I	CCNNNNNNNGG	1 cut(s)	56
Bse118I	RCCGGY	1 cut(s)	668
Bse1I	ACTGG	1 cut(s)	122
BseBI	CCWGG	2 cut(s)	374, 609
BseDI	CCNNGG	3 cut(s)	83, 258, 268
BseGI	GGATG	2 cut(s)	21, 175
BseLI	CCNNNNNNNGG	1 cut(s)	56
BseNI	ACTGG	1 cut(s)	122
BseRI	GAGGAG	2 cut(s)	419, 422
BseXI	GCAGC	3 cut(s)	155, 282, 637
BshFI	GGCC	4 cut(s)	12, 214, 341, 523
BsiHKAI	GWGCWC	1 cut(s)	576
BsiHKCI	CYCGRG	1 cut(s)	268
BsiSI	CCGG	3 cut(s)	13, 269, 669
BslI	CCNNNNNNNGG	1 cut(s)	56
BsmAI	GTCTC	1 cut(s)	418
BsmI	GAATGC	1 cut(s)	663
BsnI	GGCC	4 cut(s)	12, 214, 341, 523
BsoBI	CYCGRG	1 cut(s)	268
Bsp1286I	GDGCHC	2 cut(s)	394, 576
Bsp143I	GATC	2 cut(s)	406, 496
Bsp19I	CCATGG	1 cut(s)	83
BspACI	CCGC	1 cut(s)	566
BspANI	GGCC	4 cut(s)	12, 214, 341, 523
BspLI	GGNNCC	1 cut(s)	101
BspPI	GGATC	2 cut(s)	401, 491
BspQI	GCTCTTC	1 cut(s)	399
BsrFI	RCCGGY	1 cut(s)	668
BsrI	ACTGG	1 cut(s)	122
BssAI	RCCGGY	1 cut(s)	668
BssECI	CCNNGG	3 cut(s)	83, 258, 268
BssMI	GATC	2 cut(s)	406, 496
BssT1I	CCWWGG	2 cut(s)	83, 258
Bst2UI	CCWGG	2 cut(s)	374, 609
Bst6I	CTCTTC	1 cut(s)	399
BstBAI	YACGTR	1 cut(s)	74
BstC8I	GCNNGC	3 cut(s)	156, 560, 564
BstDEI	CTNAG	1 cut(s)	357
BstDSI	CCRYGG	1 cut(s)	83
BstF5I	GGATG	2 cut(s)	21, 175
BstKTI	GATC	2 cut(s)	409, 499
BstMAI	GTCTC	1 cut(s)	418
BstMBI	GATC	2 cut(s)	406, 496
BstMWI	GCNNNNNNNGC	1 cut(s)	580
BstNI	CCWGG	2 cut(s)	374, 609
BstNSI	RCATGY	1 cut(s)	158
BstSCI	CCNGG	4 cut(s)	267, 268, 372, 607
BstV1I	GCAGC	3 cut(s)	155, 282, 637
BstV2I	GAAGAC	2 cut(s)	315, 624
BstX2I	RGATCY	1 cut(s)	406
BstXI	CCANNNNNNTGG	1 cut(s)	380
BstYI	RGATCY	1 cut(s)	406
BsuRI	GGCC	4 cut(s)	12, 214, 341, 523
BtgI	CCRYGG	1 cut(s)	83
BtsCI	GGATG	2 cut(s)	21, 175
BtsIMutI	CAGTG	3 cut(s)	129, 215, 479
Cac8I	GCNNGC	3 cut(s)	156, 560, 564
Cfr10I	RCCGGY	1 cut(s)	668
Cfr13I	GGNCC	2 cut(s)	99, 339
Cfr9I	CCCGGG	1 cut(s)	268
Csp6I	GTAC	1 cut(s)	541
CviAII	CATG	5 cut(s)	84, 155, 509, 544, 637
CviQI	GTAC	1 cut(s)	541
DdeI	CTNAG	1 cut(s)	357
DpnI	GATC	2 cut(s)	408, 498
DpnII	GATC	2 cut(s)	406, 496
DraIII	CACNNNGTG	1 cut(s)	74
DriI	GACNNNNNGTC	1 cut(s)	316
EaeI	YGGCCR	1 cut(s)	10
Eam1104I	CTCTTC	1 cut(s)	399
Eam1105I	GACNNNNNGTC	1 cut(s)	316
EarI	CTCTTC	1 cut(s)	399
Ecl136II	GAGCTC	1 cut(s)	574
Eco130I	CCWWGG	2 cut(s)	83, 258
Eco24I	GRGCYC	2 cut(s)	394, 576
Eco47I	GGWCC	1 cut(s)	99
Eco53kI	GAGCTC	1 cut(s)	574
Eco57I	CTGAAG	2 cut(s)	205, 503
Eco88I	CYCGRG	1 cut(s)	268
EcoICRI	GAGCTC	1 cut(s)	574
EcoRII	CCWGG	2 cut(s)	372, 607
EcoT14I	CCWWGG	2 cut(s)	83, 258
EcoT38I	GRGCYC	2 cut(s)	394, 576
ErhI	CCWWGG	2 cut(s)	83, 258
FaeI	CATG	5 cut(s)	87, 158, 512, 547, 640
FalI	AAGNNNNNCTT	2 cut(s)	609, 641
FatI	CATG	5 cut(s)	83, 154, 508, 543, 636
FauNDI	CATATG	1 cut(s)	186
Fnu4HI	GCNGC	4 cut(s)	144, 296, 567, 651
FokI	GGATG	2 cut(s)	28, 182
FriOI	GRGCYC	2 cut(s)	394, 576
Fsp4HI	GCNGC	4 cut(s)	144, 296, 567, 651
FspBI	CTAG	1 cut(s)	614
GluI	GCNGC	4 cut(s)	144, 296, 567, 651
GsuI	CTGGAG	1 cut(s)	356
HaeIII	GGCC	4 cut(s)	12, 214, 341, 523
HapII	CCGG	3 cut(s)	13, 269, 669
Hin1II	CATG	5 cut(s)	87, 158, 512, 547, 640
HindIII	AAGCTT	1 cut(s)	581
HinfI	GANTC	5 cut(s)	28, 65, 426, 440, 490
HpaII	CCGG	3 cut(s)	13, 269, 669
HphI	GGTGA	1 cut(s)	442
Hpy188I	TCNGA	3 cut(s)	224, 307, 501
Hpy188III	TCNNGA	3 cut(s)	194, 398, 494
HpyAV	CCTTC	3 cut(s)	45, 395, 634
HpyCH4IV	ACGT	1 cut(s)	73
HpyCH4V	TGCA	2 cut(s)	77, 661
HpyF10VI	GCNNNNNNNGC	1 cut(s)	580
HpyF3I	CTNAG	1 cut(s)	357
HpySE526I	ACGT	1 cut(s)	73
Hsp92II	CATG	5 cut(s)	87, 158, 512, 547, 640
Kzo9I	GATC	2 cut(s)	406, 496
LguI	GCTCTTC	1 cut(s)	399
LmnI	GCTCC	1 cut(s)	610
Lsp1109I	GCAGC	3 cut(s)	155, 282, 637
LweI	GCATC	1 cut(s)	160
MaeI	CTAG	1 cut(s)	614
MaeII	ACGT	1 cut(s)	73
MaeIII	GTNAC	1 cut(s)	437
MalI	GATC	2 cut(s)	408, 498
MboI	GATC	2 cut(s)	406, 496
MboII	GAAGA	5 cut(s)	211, 320, 362, 386, 629
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	2 cut(s)	394, 576
MluCI	AATT	1 cut(s)	240
MlyI	GAGTC	3 cut(s)	37, 420, 434
MmeI	TCCRAC	1 cut(s)	614
MnlI	CCTC	7 cut(s)	50, 289, 330, 374, 380, 440, 443
MseI	TTAA	6 cut(s)	150, 239, 416, 459, 513, 585
MspA1I	CMGCKG	1 cut(s)	566
MspI	CCGG	3 cut(s)	13, 269, 669
MspR9I	CCNGG	4 cut(s)	269, 270, 374, 609
Mva1269I	GAATGC	1 cut(s)	663
MvaI	CCWGG	2 cut(s)	374, 609
MwoI	GCNNNNNNNGC	1 cut(s)	580
NciI	CCSGG	2 cut(s)	269, 270
NcoI	CCATGG	1 cut(s)	83
NdeI	CATATG	1 cut(s)	186
NdeII	GATC	2 cut(s)	406, 496
NlaIII	CATG	5 cut(s)	87, 158, 512, 547, 640
NlaIV	GGNNCC	1 cut(s)	101
NmuCI	GTSAC	1 cut(s)	437
NspI	RCATGY	1 cut(s)	158
PaeI	GCATGC	1 cut(s)	158
PciSI	GCTCTTC	1 cut(s)	399
PctI	GAATGC	1 cut(s)	663
PfeI	GAWTC	2 cut(s)	65, 490
PfoI	TCCNGGA	1 cut(s)	607
PkrI	GCNGC	4 cut(s)	145, 297, 568, 652
PleI	GAGTC	3 cut(s)	36, 420, 434
PpsI	GAGTC	3 cut(s)	36, 420, 434
Ppu21I	YACGTR	1 cut(s)	74
Psp124BI	GAGCTC	1 cut(s)	576
Psp6I	CCWGG	2 cut(s)	372, 607
PspGI	CCWGG	2 cut(s)	372, 607
PspN4I	GGNNCC	1 cut(s)	101
PspPI	GGNCC	2 cut(s)	99, 339
PsuI	RGATCY	1 cut(s)	406
RsaI	GTAC	1 cut(s)	542
RsaNI	GTAC	1 cut(s)	541
SacI	GAGCTC	1 cut(s)	576
SapI	GCTCTTC	1 cut(s)	399
SaqAI	TTAA	6 cut(s)	150, 239, 416, 459, 513, 585
SatI	GCNGC	4 cut(s)	144, 296, 567, 651
Sau3AI	GATC	2 cut(s)	406, 496
Sau96I	GGNCC	2 cut(s)	99, 339
SchI	GAGTC	3 cut(s)	37, 420, 434
ScrFI	CCNGG	4 cut(s)	269, 270, 374, 609
SduI	GDGCHC	2 cut(s)	394, 576
SetI	ASST	6 cut(s)	76, 297, 315, 378, 576, 585
SfaNI	GCATC	1 cut(s)	160
SinI	GGWCC	1 cut(s)	99
SmaI	CCCGGG	1 cut(s)	270
SphI	GCATGC	1 cut(s)	158
Sse9I	AATT	1 cut(s)	240
SsiI	CCGC	1 cut(s)	566
SspMI	CTAG	1 cut(s)	614
SstI	GAGCTC	1 cut(s)	576
StyD4I	CCNGG	4 cut(s)	267, 268, 372, 607
StyI	CCWWGG	2 cut(s)	83, 258
TaiI	ACGT	1 cut(s)	76
TaqI	TCGA	2 cut(s)	193, 230
TasI	AATT	1 cut(s)	240
TatI	WGTACW	1 cut(s)	540
TauI	GCSGC	1 cut(s)	569
TfiI	GAWTC	2 cut(s)	65, 490
Tru1I	TTAA	6 cut(s)	150, 239, 416, 459, 513, 585
Tru9I	TTAA	6 cut(s)	150, 239, 416, 459, 513, 585
TscAI	CASTG	3 cut(s)	129, 215, 486
TseFI	GTSAC	1 cut(s)	437
TseI	GCWGC	3 cut(s)	143, 295, 650
Tsp45I	GTSAC	1 cut(s)	437
TspDTI	ATGAA	4 cut(s)	32, 104, 363, 653
TspGWI	ACGGA	1 cut(s)	425
TspMI	CCCGGG	1 cut(s)	268
TspRI	CASTG	3 cut(s)	129, 215, 486
VpaK11BI	GGWCC	1 cut(s)	99
XceI	RCATGY	1 cut(s)	158
XmaI	CCCGGG	1 cut(s)	268
XspI	CTAG	1 cut(s)	614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.