Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8210258.1

Orthogroup ID

OG0029122

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 582

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8210258.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atcccatggatctttgcatggacccagacaagatttcacttaccagtgtggcttggttttggggcagcatttaagcaagccatagaaaatgatgcaaagaatcttcagatgcttcgtgacatgtataatcagtggcctttcttcagagtcaccattgatttagttgagatggtgtttgccaagggagacccaggtattacagctctttatgacaagcttttagtgtcagaagacttatggtcatttggagagcgactgaggaccaactatgaagatactaaacgcctcctactccaggttgctgggcacagagatcttctggaaggagatccttacttgaggcagagacttcttcttcgtgactcatatattacaacactaaatgtgtgccaagcctatacgctgaagcagatccgtgaccccaactatcatgttcaagtaaggccatcaaaggaaccagcaagcaagccagcagcagagctagtcaagcttaaccaaacaagcgaatatgctccaggtctagaggacacacttattttgaccatgaagggtattgctgctgggatgcagaacactggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0007275 GO:0008150 GO:0008152 GO:0008964 GO:0009506 GO:0009507 GO:0009536 GO:0015977 GO:0016020 GO:0016829 GO:0016830 GO:0016831 GO:0030054 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055044 GO:0071704 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

193

Amino Acids

22.21

Weight (kDa)

7.03

Isoelectric Point (pI)

32.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029122)

Species	Orthologous Gene IDs
prunus_persica	Prupe.3G118400_v2.0.a1
rosa_multiflora	Rmu_co8210258.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	17, 323, 406
AcuI	CTGAAG	3 cut(s)	89, 127, 425
AfiI	CCNNNNNNNGG	1 cut(s)	295
AflIII	ACRYGT	1 cut(s)	120
AgsI	TTSAA	1 cut(s)	437
AhdI	GACNNNNNGTC	1 cut(s)	238
AjnI	CCWGG	3 cut(s)	190, 294, 514
AluBI	AGCT	4 cut(s)	203, 217, 481, 490
AluI	AGCT	4 cut(s)	203, 217, 481, 490
Alw26I	GTCTC	2 cut(s)	180, 340
AlwI	GGATC	3 cut(s)	17, 323, 406
AoxI	GGCC	2 cut(s)	134, 443
ApeKI	GCWGC	3 cut(s)	65, 473, 557
ArsI	GACNNNNNNTTYG	2 cut(s)	339, 371
AspS9I	GGNCC	2 cut(s)	21, 261
AsuHPI	GGTGA	1 cut(s)	142
AvaII	GGWCC	2 cut(s)	21, 261
BaeGI	GKGCMC	1 cut(s)	309
BbsI	GAAGAC	1 cut(s)	237
BbvI	GCAGC	3 cut(s)	77, 485, 544
BccI	CCATC	2 cut(s)	163, 454
BciT130I	CCWGG	3 cut(s)	192, 296, 516
BcoDI	GTCTC	2 cut(s)	180, 340
BfaI	CTAG	2 cut(s)	482, 521
BglII	AGATCT	1 cut(s)	313
BisI	GCNGC	3 cut(s)	66, 474, 558
BlsI	GCNGC	3 cut(s)	67, 475, 559
Bme1390I	CCNGG	3 cut(s)	192, 296, 516
Bme18I	GGWCC	2 cut(s)	21, 261
BmeRI	GACNNNNNGTC	1 cut(s)	238
BmgT120I	GGNCC	2 cut(s)	21, 261
BmiI	GGNNCC	2 cut(s)	23, 456
BmrFI	CCNGG	3 cut(s)	192, 296, 516
BmsI	GCATC	3 cut(s)	82, 99, 555
BpiI	GAAGAC	1 cut(s)	237
BpmI	CTGGAG	2 cut(s)	278, 498
BpuEI	CTTGAG	1 cut(s)	358
BsaI	GGTCTC	1 cut(s)	180
BsaJI	CCNNGG	3 cut(s)	5, 180, 190
Bsc4I	CCNNNNNNNGG	1 cut(s)	295
Bse1I	ACTGG	2 cut(s)	44, 580
BseBI	CCWGG	3 cut(s)	192, 296, 516
BseDI	CCNNGG	3 cut(s)	5, 180, 190
BseGI	GGATG	1 cut(s)	570
BseLI	CCNNNNNNNGG	1 cut(s)	295
BseMII	CTCAG	1 cut(s)	248
BseNI	ACTGG	2 cut(s)	44, 580
BseSI	GKGCMC	1 cut(s)	309
BseXI	GCAGC	3 cut(s)	77, 485, 544
BseYI	CCCAGC	2 cut(s)	302, 560
BshFI	GGCC	2 cut(s)	136, 445
BslI	CCNNNNNNNGG	1 cut(s)	295
BsmAI	GTCTC	2 cut(s)	180, 340
BsnI	GGCC	2 cut(s)	136, 445
Bso31I	GGTCTC	1 cut(s)	180
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp143I	GATC	4 cut(s)	9, 313, 328, 411
Bsp19I	CCATGG	1 cut(s)	5
BspANI	GGCC	2 cut(s)	136, 445
BspCNI	CTCAG	1 cut(s)	249
BspLI	GGNNCC	2 cut(s)	23, 456
BspPI	GGATC	3 cut(s)	17, 323, 406
BspTNI	GGTCTC	1 cut(s)	180
BsrI	ACTGG	2 cut(s)	44, 580
BssECI	CCNNGG	3 cut(s)	5, 180, 190
BssMI	GATC	4 cut(s)	9, 313, 328, 411
BssT1I	CCWWGG	2 cut(s)	5, 180
Bst2UI	CCWGG	3 cut(s)	192, 296, 516
BstC8I	GCNNGC	4 cut(s)	78, 463, 467, 471
BstDEI	CTNAG	1 cut(s)	257
BstDSI	CCRYGG	1 cut(s)	5
BstENI	CCTNNNNNAGG	1 cut(s)	293
BstF5I	GGATG	1 cut(s)	570
BstKTI	GATC	4 cut(s)	12, 316, 331, 414
BstMAI	GTCTC	2 cut(s)	180, 340
BstMBI	GATC	4 cut(s)	9, 313, 328, 411
BstMWI	GCNNNNNNNGC	1 cut(s)	487
BstNI	CCWGG	3 cut(s)	192, 296, 516
BstNSI	RCATGY	1 cut(s)	124
BstSCI	CCNGG	3 cut(s)	190, 294, 514
BstSLI	GKGCMC	1 cut(s)	309
BstV1I	GCAGC	3 cut(s)	77, 485, 544
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	4 cut(s)	9, 313, 328, 411
BstXI	CCANNNNNNTGG	1 cut(s)	302
BstYI	RGATCY	4 cut(s)	9, 313, 328, 411
BsuRI	GGCC	2 cut(s)	136, 445
BtgI	CCRYGG	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	570
BtsIMutI	CAGTG	3 cut(s)	51, 137, 573
Cac8I	GCNNGC	4 cut(s)	78, 463, 467, 471
Cfr13I	GGNCC	2 cut(s)	21, 261
CviAII	CATG	5 cut(s)	6, 18, 121, 431, 544
DdeI	CTNAG	1 cut(s)	257
DpnI	GATC	4 cut(s)	11, 315, 330, 413
DpnII	GATC	4 cut(s)	9, 313, 328, 411
DriI	GACNNNNNGTC	1 cut(s)	238
Eam1105I	GACNNNNNGTC	1 cut(s)	238
Eco130I	CCWWGG	2 cut(s)	5, 180
Eco31I	GGTCTC	1 cut(s)	180
Eco47I	GGWCC	2 cut(s)	21, 261
Eco57I	CTGAAG	3 cut(s)	89, 127, 425
EcoNI	CCTNNNNNAGG	1 cut(s)	293
EcoRII	CCWGG	3 cut(s)	190, 294, 514
EcoT14I	CCWWGG	2 cut(s)	5, 180
ErhI	CCWWGG	2 cut(s)	5, 180
FaeI	CATG	5 cut(s)	9, 21, 124, 434, 547
FatI	CATG	5 cut(s)	5, 17, 120, 430, 543
Fnu4HI	GCNGC	3 cut(s)	66, 474, 558
FokI	GGATG	1 cut(s)	577
Fsp4HI	GCNGC	3 cut(s)	66, 474, 558
FspBI	CTAG	2 cut(s)	482, 521
GluI	GCNGC	3 cut(s)	66, 474, 558
GsaI	CCCAGC	2 cut(s)	306, 564
GsuI	CTGGAG	2 cut(s)	278, 498
HaeIII	GGCC	2 cut(s)	136, 445
Hin1II	CATG	5 cut(s)	9, 21, 124, 434, 547
HindIII	AAGCTT	2 cut(s)	215, 488
HinfI	GANTC	3 cut(s)	100, 147, 362
HphI	GGTGA	1 cut(s)	142
Hpy188I	TCNGA	3 cut(s)	108, 146, 229
Hpy188III	TCNNGA	4 cut(s)	116, 320, 359, 521
HpyAV	CCTTC	2 cut(s)	317, 541
HpyCH4V	TGCA	3 cut(s)	17, 95, 568
HpyF10VI	GCNNNNNNNGC	1 cut(s)	487
HpyF3I	CTNAG	1 cut(s)	257
Hsp92II	CATG	5 cut(s)	9, 21, 124, 434, 547
Kzo9I	GATC	4 cut(s)	9, 313, 328, 411
LmnI	GCTCC	1 cut(s)	517
Lsp1109I	GCAGC	3 cut(s)	77, 485, 544
LweI	GCATC	3 cut(s)	82, 99, 555
MaeI	CTAG	2 cut(s)	482, 521
MaeIII	GTNAC	4 cut(s)	116, 148, 359, 416
MalI	GATC	4 cut(s)	11, 315, 330, 413
MboI	GATC	4 cut(s)	9, 313, 328, 411
MboII	GAAGA	7 cut(s)	95, 133, 242, 284, 308, 344, 347
MflI	RGATCY	4 cut(s)	9, 313, 328, 411
MhlI	GDGCHC	1 cut(s)	309
MlyI	GAGTC	2 cut(s)	156, 356
MnlI	CCTC	4 cut(s)	252, 296, 333, 517
MseI	TTAA	2 cut(s)	72, 492
MspR9I	CCNGG	3 cut(s)	192, 296, 516
MvaI	CCWGG	3 cut(s)	192, 296, 516
MwoI	GCNNNNNNNGC	1 cut(s)	487
NcoI	CCATGG	1 cut(s)	5
NdeII	GATC	4 cut(s)	9, 313, 328, 411
NlaIII	CATG	5 cut(s)	9, 21, 124, 434, 547
NlaIV	GGNNCC	2 cut(s)	23, 456
NmuCI	GTSAC	4 cut(s)	116, 148, 359, 416
NspI	RCATGY	1 cut(s)	124
PciI	ACATGT	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	100
PkrI	GCNGC	3 cut(s)	67, 475, 559
PleI	GAGTC	2 cut(s)	155, 356
PpsI	GAGTC	2 cut(s)	155, 356
PscI	ACATGT	1 cut(s)	120
Psp6I	CCWGG	3 cut(s)	190, 294, 514
PspFI	CCCAGC	2 cut(s)	302, 560
PspGI	CCWGG	3 cut(s)	190, 294, 514
PspN4I	GGNNCC	2 cut(s)	23, 456
PspPI	GGNCC	2 cut(s)	21, 261
PsuI	RGATCY	4 cut(s)	9, 313, 328, 411
SaqAI	TTAA	2 cut(s)	72, 492
SatI	GCNGC	3 cut(s)	66, 474, 558
Sau3AI	GATC	4 cut(s)	9, 313, 328, 411
Sau96I	GGNCC	2 cut(s)	21, 261
SchI	GAGTC	2 cut(s)	156, 356
ScrFI	CCNGG	3 cut(s)	192, 296, 516
SduI	GDGCHC	1 cut(s)	309
SetI	ASST	7 cut(s)	196, 205, 219, 300, 483, 492, 520
SfaNI	GCATC	3 cut(s)	82, 99, 555
SinI	GGWCC	2 cut(s)	21, 261
SmlI	CTYRAG	1 cut(s)	337
SmoI	CTYRAG	1 cut(s)	337
SspMI	CTAG	2 cut(s)	482, 521
StyD4I	CCNGG	3 cut(s)	190, 294, 514
StyI	CCWWGG	2 cut(s)	5, 180
TfiI	GAWTC	1 cut(s)	100
Tru1I	TTAA	2 cut(s)	72, 492
Tru9I	TTAA	2 cut(s)	72, 492
TscAI	CASTG	3 cut(s)	51, 137, 580
TseFI	GTSAC	4 cut(s)	116, 148, 359, 416
TseI	GCWGC	3 cut(s)	65, 473, 557
Tsp45I	GTSAC	4 cut(s)	116, 148, 359, 416
TspDTI	ATGAA	2 cut(s)	285, 560
TspGWI	ACGGA	1 cut(s)	404
TspRI	CASTG	3 cut(s)	51, 137, 580
VpaK11BI	GGWCC	2 cut(s)	21, 261
XagI	CCTNNNNNAGG	1 cut(s)	293
XbaI	TCTAGA	1 cut(s)	520
XceI	RCATGY	1 cut(s)	124
XspI	CTAG	2 cut(s)	482, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.