Prupe.3G119000_v2.0.a1

Retrotransposon gag protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0022499
Physical Location & Seq
Reverse (-)
10336096 .. 10337157
1062 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G119000.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 1062 bp
ATGGCTTACCTAACAAAGAGAAACTCCAATTCTTACGACGACGATTGCAGCAACGACGTTTCACAATCACAAAATCAATCTATCTACTTGGCATCAGAATCAGAAACCAATTCCCCGAGCGACCAATTCTCCTCCTCCTCACAAACACCGCCCGAGTCGGTTTCTTCAAGTAATCAATTCAAAGCCAGAGCCTCACTGCCTTCAAAGACTAAAAATTTCTCAGAACCCACAACCAATCAGACCCCTTTCTACTTACCCATTGCGCCTCTGCCGATCTTTCGGGGCGGTTCCAACGAATGCCCGGTTACCCATTTAACACGGTTGGCCAAATTTTGCAGCGCAAATTTCAGTTGCCCAACAGTGGACGTGACGGTGAGAATCTTCCCGGTGACGCTGGAAAATGAAGCGGCTCTGTGGTACGATTTGAACATTGATCCCTACCCTTCGTTGAGTTGGGAAGAAATAAGATCGCTGTTCTTTCAGGCGTATGATCAGATCGATCAATGGCGGTCCGAGTTGACGATGATCAAGCAGGGCAGGGATGAGACAGTGCGTGCTTATTTTCTGAGACTGCAATGGATTTTGAAGCGGTGCCCGGATCATGGACTGCAAGACAATGTGCTCAAAGGGGTTTTTATTGATGGGTTGAGGAAGGAGTTTAAGGATTGGATTGTTGCAGAGAAACCCAGTTCGTTAAACGACGCTTTGAGGCTTGCTTTTGGGTTTGAAAAAGTGAAGAGCGTTCGGGCCGCTACCGCGGCAAAAGAGAAGGCGGTCGAGTGCGGGTTTTGCGGTGGGGGGCATGAGGAGAAGGTGTGTGAGGTAAGGGAGAGGATGAGGAAGTTGTGGGTGAAGAGTAAGGAGGAGGAGGGGTTGGTGAGGATGGTTTCAGTTTTGGGGAAGAGGGAAGAGGAAGGAGTGGAGAGAGAGGAGGAGGGAGAGTTGGTGGAGTTGAAGAAGAAGGGGCAATGCCAATGTTGGAAGCACCAGTGTTGGAAGAAAAAGCTTGAGAGGACTAAAAGCCTTGTGACTGGAAATTTCAATGCAAATAAAAAATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag

Protein Analysis

354

Amino Acids

40.32

Weight (kDa)

7.92

Isoelectric Point (pI)

51.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022499)

Species Orthologous Gene IDs
prunus_persica Prupe.3G119000_v2.0.a1 Prupe.3G119500_v2.0.a1
rosa_multiflora Rmu_sc0005782.1_g000008
rosa_rugosa Rorug02G0287200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 591
AccII CGCG 1 cut(s) 758
AclWI GGATC 2 cut(s) 428, 606
AcoI YGGCCR 1 cut(s) 324
AcsI RAATTY 5 cut(s) 214, 329, 343, 1036, 1055
AfaI GTAC 1 cut(s) 419
AfiI CCNNNNNNNGG 2 cut(s) 361, 602
AgsI TTSAA 8 cut(s) 168, 181, 204, 427, 586, 728, 955, 1042
AjiI CACGTC 1 cut(s) 367
AluBI AGCT 1 cut(s) 1006
AluI AGCT 1 cut(s) 1006
Alw21I GWGCWC 1 cut(s) 624
Alw26I GTCTC 2 cut(s) 539, 562
AlwI GGATC 2 cut(s) 428, 606
Ama87I CYCGRG 2 cut(s) 115, 152
AoxI GGCC 2 cut(s) 324, 747
ApeKI GCWGC 2 cut(s) 48, 336
ApoI RAATTY 5 cut(s) 214, 329, 343, 1036, 1055
AspLEI GCGC 2 cut(s) 265, 341
AspS9I GGNCC 2 cut(s) 510, 747
AsuC2I CCSGG 3 cut(s) 302, 386, 596
AsuHPI GGTGA 4 cut(s) 385, 400, 862, 889
AvaI CYCGRG 2 cut(s) 115, 152
AvaII GGWCC 1 cut(s) 510
BaeGI GKGCMC 1 cut(s) 596
BalI TGGCCA 1 cut(s) 326
BanI GGYRCC 1 cut(s) 591
Bbv12I GWGCWC 1 cut(s) 624
BbvI GCAGC 2 cut(s) 60, 348
BccI CCATC 2 cut(s) 635, 877
BclI TGATCA 2 cut(s) 490, 525
BcnI CCSGG 3 cut(s) 302, 386, 596
BcoDI GTCTC 2 cut(s) 539, 562
BfaI CTAG 1 cut(s) 1060
BisI GCNGC 5 cut(s) 49, 337, 408, 750, 759
BlsI GCNGC 5 cut(s) 50, 338, 409, 751, 760
Bme1390I CCNGG 3 cut(s) 302, 386, 596
Bme18I GGWCC 1 cut(s) 510
BmeT110I CYCGRG 2 cut(s) 115, 152
BmgBI CACGTC 1 cut(s) 367
BmgT120I GGNCC 2 cut(s) 510, 747
BmiI GGNNCC 2 cut(s) 289, 593
BmrFI CCNGG 3 cut(s) 302, 386, 596
BmrI ACTGGG 1 cut(s) 681
BmsI GCATC 1 cut(s) 101
BmuI ACTGGG 1 cut(s) 681
BpuEI CTTGAG 1 cut(s) 1028
BpuMI CCSGG 3 cut(s) 302, 386, 596
Bsa29I ATCGAT 1 cut(s) 498
BsaJI CCNNGG 1 cut(s) 756
Bsc4I CCNNNNNNNGG 2 cut(s) 361, 602
Bse1I ACTGG 3 cut(s) 687, 988, 1036
Bse3DI GCAATG 3 cut(s) 258, 581, 974
BseCI ATCGAT 1 cut(s) 498
BseDI CCNNGG 1 cut(s) 756
BseGI GGATG 3 cut(s) 547, 840, 888
BseLI CCNNNNNNNGG 2 cut(s) 361, 602
BseMI GCAATG 3 cut(s) 258, 581, 974
BseMII CTCAG 2 cut(s) 234, 557
BseNI ACTGG 3 cut(s) 687, 988, 1036
BseRI GAGGAG 8 cut(s) 121, 124, 127, 821, 878, 881, 944, 947
BseSI GKGCMC 1 cut(s) 596
BseXI GCAGC 2 cut(s) 60, 348
Bsh1236I CGCG 1 cut(s) 758
Bsh1285I CGRYCG 1 cut(s) 777
BshFI GGCC 2 cut(s) 326, 749
BshNI GGYRCC 1 cut(s) 591
BshVI ATCGAT 1 cut(s) 498
BsiEI CGRYCG 1 cut(s) 777
BsiHKAI GWGCWC 1 cut(s) 624
BsiHKCI CYCGRG 2 cut(s) 115, 152
BsiSI CCGG 3 cut(s) 302, 386, 596
BslI CCNNNNNNNGG 2 cut(s) 361, 602
BsmAI GTCTC 2 cut(s) 539, 562
BsmI GAATGC 1 cut(s) 302
BsnI GGCC 2 cut(s) 326, 749
BsoBI CYCGRG 2 cut(s) 115, 152
Bsp1286I GDGCHC 2 cut(s) 596, 624
Bsp143I GATC 8 cut(s) 273, 433, 467, 490, 495, 499, 525, 598
BspANI GGCC 2 cut(s) 326, 749
BspCNI CTCAG 2 cut(s) 233, 558
BspDI ATCGAT 1 cut(s) 498
BspFNI CGCG 1 cut(s) 758
BspLI GGNNCC 2 cut(s) 289, 593
BspPI GGATC 2 cut(s) 428, 606
BspQI GCTCTTC 1 cut(s) 731
BspT107I GGYRCC 1 cut(s) 591
BsrDI GCAATG 3 cut(s) 258, 581, 974
BsrI ACTGG 3 cut(s) 687, 988, 1036
BssECI CCNNGG 1 cut(s) 756
BssMI GATC 8 cut(s) 273, 433, 467, 490, 495, 499, 525, 598
Bst4CI ACNGT 4 cut(s) 321, 361, 373, 550
Bst6I CTCTTC 4 cut(s) 731, 848, 896, 903
BstC8I GCNNGC 2 cut(s) 555, 714
BstDEI CTNAG 2 cut(s) 220, 566
BstDSI CCRYGG 1 cut(s) 756
BstEII GGTNACC 1 cut(s) 304
BstF5I GGATG 3 cut(s) 547, 840, 888
BstFNI CGCG 1 cut(s) 758
BstHHI GCGC 2 cut(s) 265, 341
BstKTI GATC 8 cut(s) 276, 436, 470, 493, 498, 502, 528, 601
BstMAI GTCTC 2 cut(s) 539, 562
BstMBI GATC 8 cut(s) 273, 433, 467, 490, 495, 499, 525, 598
BstMCI CGRYCG 1 cut(s) 777
BstMWI GCNNNNNNNGC 3 cut(s) 755, 758, 789
BstPI GGTNACC 1 cut(s) 304
BstSCI CCNGG 3 cut(s) 300, 384, 594
BstSLI GKGCMC 1 cut(s) 596
BstUI CGCG 1 cut(s) 758
BstV1I GCAGC 2 cut(s) 60, 348
Bsu15I ATCGAT 1 cut(s) 498
BsuRI GGCC 2 cut(s) 326, 749
BsuTUI ATCGAT 1 cut(s) 498
BtgI CCRYGG 1 cut(s) 756
BtrI CACGTC 1 cut(s) 367
BtsCI GGATG 3 cut(s) 547, 840, 888
BtsI GCAGTG 1 cut(s) 194
BtsIMutI CAGTG 4 cut(s) 194, 366, 555, 995
Cac8I GCNNGC 2 cut(s) 555, 714
CfoI GCGC 2 cut(s) 265, 341
Cfr13I GGNCC 2 cut(s) 510, 747
Cfr42I CCGCGG 1 cut(s) 759
ClaI ATCGAT 1 cut(s) 498
CpoI CGGWCCG 1 cut(s) 510
CseI GACGC 2 cut(s) 400, 710
Csp6I GTAC 1 cut(s) 418
CspI CGGWCCG 1 cut(s) 510
CviAII CATG 2 cut(s) 602, 803
CviJI RGCY 9 cut(s) 5, 185, 191, 326, 410, 712, 749, 1006, 1023
CviKI_1 RGCY 9 cut(s) 5, 185, 191, 326, 410, 712, 749, 1006, 1023
CviQI GTAC 1 cut(s) 418
DdeI CTNAG 2 cut(s) 220, 566
DpnI GATC 8 cut(s) 275, 435, 469, 492, 497, 501, 527, 600
DpnII GATC 8 cut(s) 273, 433, 467, 490, 495, 499, 525, 598
EaeI YGGCCR 1 cut(s) 324
Eam1104I CTCTTC 4 cut(s) 731, 848, 896, 903
EarI CTCTTC 4 cut(s) 731, 848, 896, 903
Eco47I GGWCC 1 cut(s) 510
Eco88I CYCGRG 2 cut(s) 115, 152
Eco91I GGTNACC 1 cut(s) 304
EcoO65I GGTNACC 1 cut(s) 304
FaeI CATG 2 cut(s) 605, 806
FaiI YATR 3 cut(s) 489, 603, 804
FatI CATG 2 cut(s) 601, 802
FauI CCCGC 1 cut(s) 776
FbaI TGATCA 2 cut(s) 490, 525
Fnu4HI GCNGC 5 cut(s) 49, 337, 408, 750, 759
FokI GGATG 3 cut(s) 554, 847, 895
Fsp4HI GCNGC 5 cut(s) 49, 337, 408, 750, 759
FspBI CTAG 1 cut(s) 1060
GlaI GCGC 2 cut(s) 264, 340
GluI GCNGC 5 cut(s) 49, 337, 408, 750, 759
HaeIII GGCC 2 cut(s) 326, 749
HapII CCGG 3 cut(s) 302, 386, 596
HgaI GACGC 2 cut(s) 400, 710
HhaI GCGC 2 cut(s) 265, 341
Hin1II CATG 2 cut(s) 605, 806
Hin6I GCGC 2 cut(s) 263, 339
HinP1I GCGC 2 cut(s) 263, 339
HincII GTYRAC 1 cut(s) 519
HindII GTYRAC 1 cut(s) 519
HindIII AAGCTT 1 cut(s) 1004
HinfI GANTC 3 cut(s) 98, 155, 378
HpaII CCGG 3 cut(s) 302, 386, 596
HphI GGTGA 4 cut(s) 385, 400, 862, 889
Hpy166II GTNNAC 2 cut(s) 364, 519
Hpy188I TCNGA 7 cut(s) 97, 103, 223, 240, 495, 514, 567
Hpy8I GTNNAC 2 cut(s) 364, 519
Hpy99I CGWCG 4 cut(s) 41, 44, 59, 704
HpyAV CCTTC 7 cut(s) 210, 453, 646, 763, 805, 908, 955
HpyCH4III ACNGT 4 cut(s) 321, 361, 373, 550
HpyCH4IV ACGT 2 cut(s) 57, 366
HpyCH4V TGCA 6 cut(s) 48, 336, 574, 610, 677, 1046
HpyF10VI GCNNNNNNNGC 3 cut(s) 755, 758, 789
HpyF3I CTNAG 2 cut(s) 220, 566
HpySE526I ACGT 2 cut(s) 57, 366
Hsp92II CATG 2 cut(s) 605, 806
HspAI GCGC 2 cut(s) 263, 339
Ksp22I TGATCA 2 cut(s) 490, 525
KspI CCGCGG 1 cut(s) 759
Kzo9I GATC 8 cut(s) 273, 433, 467, 490, 495, 499, 525, 598
LguI GCTCTTC 1 cut(s) 731
Lsp1109I GCAGC 2 cut(s) 60, 348
LweI GCATC 1 cut(s) 101
MaeI CTAG 1 cut(s) 1060
MaeII ACGT 2 cut(s) 57, 366
MaeIII GTNAC 4 cut(s) 304, 367, 388, 1027
MalI GATC 8 cut(s) 275, 435, 469, 492, 497, 501, 527, 600
MboI GATC 8 cut(s) 273, 433, 467, 490, 495, 499, 525, 598
MhlI GDGCHC 2 cut(s) 596, 624
MlsI TGGCCA 1 cut(s) 326
MluCI AATT 9 cut(s) 28, 109, 125, 176, 214, 329, 343, 1036, 1055
MluNI TGGCCA 1 cut(s) 326
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 3 cut(s) 315, 959, 974
Mox20I TGGCCA 1 cut(s) 326
MscI TGGCCA 1 cut(s) 326
MseI TTAA 3 cut(s) 314, 660, 695
Msp20I TGGCCA 1 cut(s) 326
MspA1I CMGCKG 1 cut(s) 758
MspI CCGG 3 cut(s) 302, 386, 596
MspR9I CCNGG 3 cut(s) 302, 386, 596
Mva1269I GAATGC 1 cut(s) 302
MvnI CGCG 1 cut(s) 758
MwoI GCNNNNNNNGC 3 cut(s) 755, 758, 789
NciI CCSGG 3 cut(s) 302, 386, 596
NdeII GATC 8 cut(s) 273, 433, 467, 490, 495, 499, 525, 598
NlaIII CATG 2 cut(s) 605, 806
NlaIV GGNNCC 2 cut(s) 289, 593
NmuCI GTSAC 3 cut(s) 367, 388, 1027
PciSI GCTCTTC 1 cut(s) 731
PctI GAATGC 1 cut(s) 302
PfeI GAWTC 2 cut(s) 98, 378
PkrI GCNGC 5 cut(s) 50, 338, 409, 751, 760
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
PspEI GGTNACC 1 cut(s) 304
PspN4I GGNNCC 2 cut(s) 289, 593
PspPI GGNCC 2 cut(s) 510, 747
RsaI GTAC 1 cut(s) 419
RsaNI GTAC 1 cut(s) 418
Rsr2I CGGWCCG 1 cut(s) 510
RsrII CGGWCCG 1 cut(s) 510
SacII CCGCGG 1 cut(s) 759
SapI GCTCTTC 1 cut(s) 731
SaqAI TTAA 3 cut(s) 314, 660, 695
SatI GCNGC 5 cut(s) 49, 337, 408, 750, 759
Sau3AI GATC 8 cut(s) 273, 433, 467, 490, 495, 499, 525, 598
Sau96I GGNCC 2 cut(s) 510, 747
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 3 cut(s) 302, 386, 596
SduI GDGCHC 2 cut(s) 596, 624
SetI ASST 6 cut(s) 12, 60, 369, 816, 825, 1008
SfaNI GCATC 1 cut(s) 101
Sfr303I CCGCGG 1 cut(s) 759
SgrBI CCGCGG 1 cut(s) 759
SinI GGWCC 1 cut(s) 510
SmlI CTYRAG 1 cut(s) 1007
SmoI CTYRAG 1 cut(s) 1007
Sse9I AATT 9 cut(s) 28, 109, 125, 176, 214, 329, 343, 1036, 1055
SspMI CTAG 1 cut(s) 1060
StyD4I CCNGG 3 cut(s) 300, 384, 594
TaaI ACNGT 4 cut(s) 321, 361, 373, 550
TaiI ACGT 2 cut(s) 60, 369
TaqI TCGA 2 cut(s) 498, 777
TasI AATT 9 cut(s) 28, 109, 125, 176, 214, 329, 343, 1036, 1055
TauI GCSGC 3 cut(s) 410, 752, 761
TfiI GAWTC 2 cut(s) 98, 378
Tru1I TTAA 3 cut(s) 314, 660, 695
Tru9I TTAA 3 cut(s) 314, 660, 695
TscAI CASTG 4 cut(s) 201, 366, 555, 995
TseFI GTSAC 3 cut(s) 367, 388, 1027
TseI GCWGC 2 cut(s) 48, 336
Tsp45I GTSAC 3 cut(s) 367, 388, 1027
TspDTI ATGAA 1 cut(s) 417
TspRI CASTG 4 cut(s) 201, 366, 555, 995
VpaK11BI GGWCC 1 cut(s) 510
XapI RAATTY 5 cut(s) 214, 329, 343, 1036, 1055
XspI CTAG 1 cut(s) 1060
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.