Prupe.3G119500_v2.0.a1

Retrotransposon gag protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0022499
Physical Location & Seq
Reverse (-)
10418052 .. 10419116
1065 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G119500.1

Sequence Viewer

Length: 1065 bp
ATGGCTTACCTAACAAAGAGAAACTCCAATTCTTACGACGACGATTGCAGCGACGACGTTTCACAATCACAAAATCAATCTATCTACTTGGCATCAGAATCAGAAACCAATTCCCCGAGCGACCAATTCTCCTCCTCACAACCACAGCCCGAGTCTGTTTCTTCAAGTAATCAAATCAAAGCCAGAGCCTCACTGCCATCAAAGACTAAAAATTTCTCAGAACCCACAACCAATCAGACCCCTTACTACATACCCATTGCGCCTCTGCCGATCTTTCGGGGCGGTTCGAACGAATGCCCGGTTACCCATTTAACCCGGTTCGCCAAATTTTGCCGCGCAAATTTCAGTTGCCCAACAGTGGACGTGATGGTGAGAATATTCCCGGTGACGCTTGAAAATGAAGCGGCTCTGTGGTACGATTTGAACATTGATCCCTACCCTTCGTTTAGTTGGGAAGAAATAAGATCGCTGTTCTTTCAGGCGTATGATCAGATCGATCAATTGCGGTCGGAATTGACGATGATCAAGCAGGGCAGGGATGAGACAGTGCGTGCTTATTTTCTGAGACTGCAATGGATTTTGAAGCGGTGGCCGGATCATGGACCGCAAGACAATGTGCTCAAAGGGGTTTTTATTGATGGGTTGAGGAAGGAGTTTAAGGATTGGATTGTTGCAGAGAAACCCAGTTCCTTAAACGACGCTTTGAGGCTTGCTTTTGGGTTTGAAAAAGTGAAGAGCGTTCGGGCTGCTACCGCGGCAAAAGAGAAGGTTGTCGAGTGCGGGTTTTGCGGTGGGGGGCATGAGGAGAAGGGGTGTGAGGTAAGGGACAGGATGAGGAAGTTGTGGGTGAAGAGTAAGGAGGAGGGGTTGGTGAGGATGGTTTCAGTTTTGGGGAAGAGGGAAGAGGAAGGAGTGGAGAGAGAGGAGGAGGGAGAGTTGGTGGAGTTCAAGAAGAAGGGGCAATGCCAATGTTGGAAGCACCAGTGTTGGAAGAAAAAGCTTGAGAGGAGTAAAAGCCTTGTGAAAAATAGTCTTTTAGTGAAGGTTGTGTCCAATATGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag

Protein Analysis

355

Amino Acids

40.55

Weight (kDa)

8.23

Isoelectric Point (pI)

53.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022499)

Species Orthologous Gene IDs
prunus_persica Prupe.3G119000_v2.0.a1 Prupe.3G119500_v2.0.a1
rosa_multiflora Rmu_sc0005782.1_g000008
rosa_rugosa Rorug02G0287200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 336, 755
AclWI GGATC 2 cut(s) 425, 603
AcoI YGGCCR 1 cut(s) 590
AcsI RAATTY 3 cut(s) 211, 326, 340
AfaI GTAC 1 cut(s) 416
AfiI CCNNNNNNNGG 2 cut(s) 358, 599
AgsI TTSAA 6 cut(s) 165, 395, 424, 583, 725, 949
AjiI CACGTC 1 cut(s) 364
AluBI AGCT 1 cut(s) 1000
AluI AGCT 1 cut(s) 1000
Alw21I GWGCWC 1 cut(s) 621
Alw26I GTCTC 2 cut(s) 536, 559
AlwI GGATC 2 cut(s) 425, 603
Ama87I CYCGRG 2 cut(s) 115, 149
AoxI GGCC 1 cut(s) 590
ApeKI GCWGC 2 cut(s) 48, 746
ApoI RAATTY 3 cut(s) 211, 326, 340
AspLEI GCGC 2 cut(s) 262, 338
AspS9I GGNCC 1 cut(s) 602
AsuC2I CCSGG 3 cut(s) 299, 316, 383
AsuHPI GGTGA 4 cut(s) 382, 397, 859, 883
AsuII TTCGAA 1 cut(s) 287
AvaI CYCGRG 2 cut(s) 115, 149
AvaII GGWCC 1 cut(s) 602
Bbv12I GWGCWC 1 cut(s) 621
BbvI GCAGC 2 cut(s) 60, 733
BccI CCATC 4 cut(s) 205, 361, 632, 871
BclI TGATCA 2 cut(s) 487, 522
BcnI CCSGG 3 cut(s) 299, 316, 383
BcoDI GTCTC 2 cut(s) 536, 559
BisI GCNGC 5 cut(s) 49, 334, 405, 747, 756
BlsI GCNGC 5 cut(s) 50, 335, 406, 748, 757
Bme1390I CCNGG 3 cut(s) 299, 316, 383
Bme18I GGWCC 1 cut(s) 602
BmeT110I CYCGRG 2 cut(s) 115, 149
BmgBI CACGTC 1 cut(s) 364
BmgT120I GGNCC 1 cut(s) 602
BmrFI CCNGG 3 cut(s) 299, 316, 383
BmrI ACTGGG 1 cut(s) 678
BmsI GCATC 1 cut(s) 101
BmuI ACTGGG 1 cut(s) 678
Bpu14I TTCGAA 1 cut(s) 287
BpuEI CTTGAG 1 cut(s) 1022
BpuMI CCSGG 3 cut(s) 299, 316, 383
Bsa29I ATCGAT 1 cut(s) 495
BsaJI CCNNGG 1 cut(s) 753
Bsc4I CCNNNNNNNGG 2 cut(s) 358, 599
Bse1I ACTGG 2 cut(s) 684, 982
Bse3DI GCAATG 3 cut(s) 255, 578, 968
BseCI ATCGAT 1 cut(s) 495
BseDI CCNNGG 1 cut(s) 753
BseGI GGATG 3 cut(s) 544, 837, 882
BseLI CCNNNNNNNGG 2 cut(s) 358, 599
BseMI GCAATG 3 cut(s) 255, 578, 968
BseMII CTCAG 2 cut(s) 231, 554
BseNI ACTGG 2 cut(s) 684, 982
BseRI GAGGAG 7 cut(s) 121, 124, 818, 875, 938, 941, 1021
BseXI GCAGC 2 cut(s) 60, 733
Bsh1236I CGCG 2 cut(s) 336, 755
Bsh1285I CGRYCG 1 cut(s) 509
BshFI GGCC 1 cut(s) 592
BshVI ATCGAT 1 cut(s) 495
BsiEI CGRYCG 1 cut(s) 509
BsiHKAI GWGCWC 1 cut(s) 621
BsiHKCI CYCGRG 2 cut(s) 115, 149
BsiSI CCGG 4 cut(s) 299, 316, 383, 593
BslFI GGGAC 1 cut(s) 839
BslI CCNNNNNNNGG 2 cut(s) 358, 599
BsmAI GTCTC 2 cut(s) 536, 559
BsmFI GGGAC 1 cut(s) 839
BsmI GAATGC 1 cut(s) 299
BsnI GGCC 1 cut(s) 592
BsoBI CYCGRG 2 cut(s) 115, 149
Bsp119I TTCGAA 1 cut(s) 287
Bsp1286I GDGCHC 1 cut(s) 621
Bsp143I GATC 8 cut(s) 270, 430, 464, 487, 492, 496, 522, 595
BspANI GGCC 1 cut(s) 592
BspCNI CTCAG 2 cut(s) 230, 555
BspDI ATCGAT 1 cut(s) 495
BspFNI CGCG 2 cut(s) 336, 755
BspPI GGATC 2 cut(s) 425, 603
BspQI GCTCTTC 1 cut(s) 728
BspT104I TTCGAA 1 cut(s) 287
BsrDI GCAATG 3 cut(s) 255, 578, 968
BsrI ACTGG 2 cut(s) 684, 982
BssECI CCNNGG 1 cut(s) 753
BssMI GATC 8 cut(s) 270, 430, 464, 487, 492, 496, 522, 595
Bst4CI ACNGT 2 cut(s) 358, 547
Bst6I CTCTTC 4 cut(s) 728, 845, 890, 897
BstBI TTCGAA 1 cut(s) 287
BstC8I GCNNGC 2 cut(s) 552, 711
BstDEI CTNAG 2 cut(s) 217, 563
BstDSI CCRYGG 1 cut(s) 753
BstEII GGTNACC 1 cut(s) 301
BstF5I GGATG 3 cut(s) 544, 837, 882
BstFNI CGCG 2 cut(s) 336, 755
BstHHI GCGC 2 cut(s) 262, 338
BstKTI GATC 8 cut(s) 273, 433, 467, 490, 495, 499, 525, 598
BstMAI GTCTC 2 cut(s) 536, 559
BstMBI GATC 8 cut(s) 270, 430, 464, 487, 492, 496, 522, 595
BstMCI CGRYCG 1 cut(s) 509
BstMWI GCNNNNNNNGC 3 cut(s) 752, 755, 786
BstPI GGTNACC 1 cut(s) 301
BstSCI CCNGG 3 cut(s) 297, 314, 381
BstUI CGCG 2 cut(s) 336, 755
BstV1I GCAGC 2 cut(s) 60, 733
Bsu15I ATCGAT 1 cut(s) 495
BsuRI GGCC 1 cut(s) 592
BsuTUI ATCGAT 1 cut(s) 495
BtgI CCRYGG 1 cut(s) 753
BtrI CACGTC 1 cut(s) 364
BtsCI GGATG 3 cut(s) 544, 837, 882
BtsI GCAGTG 1 cut(s) 191
BtsIMutI CAGTG 4 cut(s) 191, 363, 552, 989
Cac8I GCNNGC 2 cut(s) 552, 711
CfoI GCGC 2 cut(s) 262, 338
Cfr13I GGNCC 1 cut(s) 602
Cfr42I CCGCGG 1 cut(s) 756
ClaI ATCGAT 1 cut(s) 495
CseI GACGC 2 cut(s) 397, 707
Csp6I GTAC 1 cut(s) 415
CviAII CATG 2 cut(s) 599, 800
CviQI GTAC 1 cut(s) 415
DdeI CTNAG 2 cut(s) 217, 563
DpnI GATC 8 cut(s) 272, 432, 466, 489, 494, 498, 524, 597
DpnII GATC 8 cut(s) 270, 430, 464, 487, 492, 496, 522, 595
EaeI YGGCCR 1 cut(s) 590
Eam1104I CTCTTC 4 cut(s) 728, 845, 890, 897
EarI CTCTTC 4 cut(s) 728, 845, 890, 897
Eco47I GGWCC 1 cut(s) 602
Eco88I CYCGRG 2 cut(s) 115, 149
Eco91I GGTNACC 1 cut(s) 301
EcoO65I GGTNACC 1 cut(s) 301
FaeI CATG 2 cut(s) 602, 803
FaiI YATR 6 cut(s) 251, 486, 600, 801, 1058, 1063
FaqI GGGAC 1 cut(s) 839
FatI CATG 2 cut(s) 598, 799
FauI CCCGC 1 cut(s) 773
FbaI TGATCA 2 cut(s) 487, 522
Fnu4HI GCNGC 5 cut(s) 49, 334, 405, 747, 756
FokI GGATG 3 cut(s) 551, 844, 889
Fsp4HI GCNGC 5 cut(s) 49, 334, 405, 747, 756
GlaI GCGC 2 cut(s) 261, 337
GluI GCNGC 5 cut(s) 49, 334, 405, 747, 756
HaeIII GGCC 1 cut(s) 592
HapII CCGG 4 cut(s) 299, 316, 383, 593
HgaI GACGC 2 cut(s) 397, 707
HhaI GCGC 2 cut(s) 262, 338
Hin1II CATG 2 cut(s) 602, 803
Hin6I GCGC 2 cut(s) 260, 336
HinP1I GCGC 2 cut(s) 260, 336
HindIII AAGCTT 1 cut(s) 998
HinfI GANTC 2 cut(s) 98, 152
HpaII CCGG 4 cut(s) 299, 316, 383, 593
HphI GGTGA 4 cut(s) 382, 397, 859, 883
Hpy166II GTNNAC 1 cut(s) 361
Hpy188I TCNGA 7 cut(s) 97, 103, 220, 237, 492, 511, 564
Hpy188III TCNNGA 1 cut(s) 949
Hpy8I GTNNAC 1 cut(s) 361
Hpy99I CGWCG 5 cut(s) 41, 44, 56, 59, 701
HpyAV CCTTC 7 cut(s) 450, 643, 760, 802, 902, 949, 1036
HpyCH4III ACNGT 2 cut(s) 358, 547
HpyCH4IV ACGT 2 cut(s) 57, 363
HpyCH4V TGCA 3 cut(s) 48, 571, 674
HpyF10VI GCNNNNNNNGC 3 cut(s) 752, 755, 786
HpyF3I CTNAG 2 cut(s) 217, 563
HpySE526I ACGT 2 cut(s) 57, 363
Hsp92II CATG 2 cut(s) 602, 803
HspAI GCGC 2 cut(s) 260, 336
Ksp22I TGATCA 2 cut(s) 487, 522
KspI CCGCGG 1 cut(s) 756
Kzo9I GATC 8 cut(s) 270, 430, 464, 487, 492, 496, 522, 595
LguI GCTCTTC 1 cut(s) 728
Lsp1109I GCAGC 2 cut(s) 60, 733
LweI GCATC 1 cut(s) 101
MaeII ACGT 2 cut(s) 57, 363
MaeIII GTNAC 2 cut(s) 301, 385
MalI GATC 8 cut(s) 272, 432, 466, 489, 494, 498, 524, 597
MboI GATC 8 cut(s) 270, 430, 464, 487, 492, 496, 522, 595
MboII GAAGA 8 cut(s) 153, 467, 745, 862, 907, 914, 964, 1003
MfeI CAATTG 1 cut(s) 500
MhlI GDGCHC 1 cut(s) 621
MluCI AATT 8 cut(s) 28, 109, 125, 211, 326, 340, 500, 512
MlyI GAGTC 1 cut(s) 161
MmeI TCCRAC 3 cut(s) 489, 953, 968
MseI TTAA 3 cut(s) 311, 657, 692
MspA1I CMGCKG 1 cut(s) 755
MspI CCGG 4 cut(s) 299, 316, 383, 593
MspR9I CCNGG 3 cut(s) 299, 316, 383
MunI CAATTG 1 cut(s) 500
Mva1269I GAATGC 1 cut(s) 299
MvnI CGCG 2 cut(s) 336, 755
MwoI GCNNNNNNNGC 3 cut(s) 752, 755, 786
NciI CCSGG 3 cut(s) 299, 316, 383
NdeII GATC 8 cut(s) 270, 430, 464, 487, 492, 496, 522, 595
NlaIII CATG 2 cut(s) 602, 803
NmuCI GTSAC 1 cut(s) 385
NspV TTCGAA 1 cut(s) 287
PciSI GCTCTTC 1 cut(s) 728
PcsI WCGNNNNNNNCGW 2 cut(s) 48, 515
PctI GAATGC 1 cut(s) 299
PfeI GAWTC 1 cut(s) 98
PkrI GCNGC 5 cut(s) 50, 335, 406, 748, 757
PleI GAGTC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 160
PspEI GGTNACC 1 cut(s) 301
PspPI GGNCC 1 cut(s) 602
RsaI GTAC 1 cut(s) 416
RsaNI GTAC 1 cut(s) 415
SacII CCGCGG 1 cut(s) 756
SapI GCTCTTC 1 cut(s) 728
SaqAI TTAA 3 cut(s) 311, 657, 692
SatI GCNGC 5 cut(s) 49, 334, 405, 747, 756
Sau3AI GATC 8 cut(s) 270, 430, 464, 487, 492, 496, 522, 595
Sau96I GGNCC 1 cut(s) 602
SchI GAGTC 1 cut(s) 161
ScrFI CCNGG 3 cut(s) 299, 316, 383
SduI GDGCHC 1 cut(s) 621
SetI ASST 7 cut(s) 12, 60, 366, 771, 822, 1002, 1047
SfaNI GCATC 1 cut(s) 101
Sfr303I CCGCGG 1 cut(s) 756
SfuI TTCGAA 1 cut(s) 287
SgrBI CCGCGG 1 cut(s) 756
SinI GGWCC 1 cut(s) 602
SmlI CTYRAG 1 cut(s) 1001
SmoI CTYRAG 1 cut(s) 1001
Sse9I AATT 8 cut(s) 28, 109, 125, 211, 326, 340, 500, 512
SspI AATATT 1 cut(s) 378
StyD4I CCNGG 3 cut(s) 297, 314, 381
TaaI ACNGT 2 cut(s) 358, 547
TaiI ACGT 2 cut(s) 60, 366
TaqI TCGA 3 cut(s) 287, 495, 774
TasI AATT 8 cut(s) 28, 109, 125, 211, 326, 340, 500, 512
TauI GCSGC 3 cut(s) 336, 407, 758
TfiI GAWTC 1 cut(s) 98
Tru1I TTAA 3 cut(s) 311, 657, 692
Tru9I TTAA 3 cut(s) 311, 657, 692
TscAI CASTG 4 cut(s) 198, 363, 552, 989
TseFI GTSAC 1 cut(s) 385
TseI GCWGC 2 cut(s) 48, 746
Tsp45I GTSAC 1 cut(s) 385
TspDTI ATGAA 1 cut(s) 414
TspRI CASTG 4 cut(s) 198, 363, 552, 989
VpaK11BI GGWCC 1 cut(s) 602
XapI RAATTY 3 cut(s) 211, 326, 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.