Rmu_sc0005782.1_g000008

Retrotransposon gag protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005782.1
OG0022499
Physical Location & Seq
Reverse (-)
42562 .. 44085
1524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005782.1_g000008.1.cds

Sequence Viewer

Length: 666 bp
atggacgtaatgatgaggaccttcccggtcacgctggaaaacgaggctgctctatggtatgatttgaacatagaaccctacccttcgcttaattgggatgaaattcgatctttgttcttggaggcatataataatattgaactaaagacagagctgacgaccattcatcaaggagaagaggaggcgcctacccctggttccgtgcctgggtgggatgagagtgaagtcggagatgatttgattaaaggggtgtttatgaatggggtgaaggaggagtttcgggattggattgttccccagaaatccgattccttaaacgactcattgcggcttgcgttggggtttgaacaagtgaggagcattaggggtgttacaaaaatggaggtcaagtgtgggttttgcgatgaggatgggcatgaggagaaagggtgtgagggtagggagagattgaagaggttgtgggtggagagaacggaggaggaggagaagagtcaagtggggaaggagttggtgaggtgtgattctgtttcaacggggaagagtgaagggggagatgggaagaagaagaagaggcagtgtcagtgttggaagaaagagcttgagaggagtaaaacccttgggactgggagttttaatgcagatgcatgtgagaaattttcagagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag

Protein Analysis

221

Amino Acids

25.24

Weight (kDa)

4.82

Isoelectric Point (pI)

58.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022499)

Species Orthologous Gene IDs
prunus_persica Prupe.3G119000_v2.0.a1 Prupe.3G119500_v2.0.a1
rosa_multiflora Rmu_sc0005782.1_g000008
rosa_rugosa Rorug02G0287200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 184
AciI CCGC 1 cut(s) 328
AcsI RAATTY 2 cut(s) 102, 653
AcyI GRCGYC 1 cut(s) 185
AfiI CCNNNNNNNGG 2 cut(s) 194, 207
AgsI TTSAA 5 cut(s) 67, 140, 347, 451, 531
AjnI CCWGG 2 cut(s) 193, 205
AluBI AGCT 2 cut(s) 154, 598
AluI AGCT 2 cut(s) 154, 598
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 2 cut(s) 102, 653
AspLEI GCGC 1 cut(s) 187
AspS9I GGNCC 1 cut(s) 18
AsuC2I CCSGG 1 cut(s) 26
AsuHPI GGTGA 2 cut(s) 277, 523
AvaII GGWCC 1 cut(s) 18
BanI GGYRCC 1 cut(s) 184
BbvI GCAGC 1 cut(s) 34
BccI CCATC 2 cut(s) 404, 548
BciT130I CCWGG 2 cut(s) 195, 207
BcnI CCSGG 1 cut(s) 26
BfoI RGCGCY 1 cut(s) 188
BisI GCNGC 2 cut(s) 48, 329
BlsI GCNGC 2 cut(s) 49, 330
Bme1390I CCNGG 3 cut(s) 26, 195, 207
Bme18I GGWCC 1 cut(s) 18
BmgT120I GGNCC 1 cut(s) 18
BmiI GGNNCC 2 cut(s) 186, 199
BmrFI CCNGG 3 cut(s) 26, 195, 207
BmrI ACTGGG 1 cut(s) 633
BmsI GCATC 1 cut(s) 631
BmuI ACTGGG 1 cut(s) 633
BpuEI CTTGAG 1 cut(s) 620
BpuMI CCSGG 1 cut(s) 26
BsaHI GRCGYC 1 cut(s) 185
BsaJI CCNNGG 3 cut(s) 193, 206, 616
BsaXI ACNNNNNCTCC 4 cut(s) 374, 404, 413, 443
Bsc4I CCNNNNNNNGG 2 cut(s) 194, 207
Bse1I ACTGG 1 cut(s) 628
Bse3DI GCAATG 1 cut(s) 323
BseBI CCWGG 2 cut(s) 195, 207
BseDI CCNNGG 3 cut(s) 193, 206, 616
BseGI GGATG 3 cut(s) 103, 220, 415
BseLI CCNNNNNNNGG 2 cut(s) 194, 207
BseMI GCAATG 1 cut(s) 323
BseNI ACTGG 1 cut(s) 628
BseRI GAGGAG 8 cut(s) 194, 287, 370, 434, 491, 494, 497, 619
BseXI GCAGC 1 cut(s) 34
BshNI GGYRCC 1 cut(s) 184
BsiSI CCGG 1 cut(s) 26
BslFI GGGAC 1 cut(s) 634
BslI CCNNNNNNNGG 2 cut(s) 194, 207
BsmFI GGGAC 1 cut(s) 634
Bsp143I GATC 1 cut(s) 107
BspACI CCGC 1 cut(s) 328
BspLI GGNNCC 2 cut(s) 186, 199
BspT107I GGYRCC 1 cut(s) 184
BsrDI GCAATG 1 cut(s) 323
BsrI ACTGG 1 cut(s) 628
BssECI CCNNGG 3 cut(s) 193, 206, 616
BssMI GATC 1 cut(s) 107
BssNI GRCGYC 1 cut(s) 185
BssT1I CCWWGG 1 cut(s) 616
Bst2UI CCWGG 2 cut(s) 195, 207
Bst6I CTCTTC 5 cut(s) 171, 446, 482, 533, 563
BstACI GRCGYC 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 333
BstF5I GGATG 3 cut(s) 103, 220, 415
BstH2I RGCGCY 1 cut(s) 188
BstHHI GCGC 1 cut(s) 187
BstKTI GATC 1 cut(s) 110
BstMBI GATC 1 cut(s) 107
BstNI CCWGG 2 cut(s) 195, 207
BstNSI RCATGY 1 cut(s) 648
BstSCI CCNGG 3 cut(s) 24, 193, 205
BstV1I GCAGC 1 cut(s) 34
BtgZI GCGATG 1 cut(s) 417
BtsCI GGATG 3 cut(s) 103, 220, 415
BtsI GCAGTG 1 cut(s) 581
BtsIMutI CAGTG 2 cut(s) 581, 587
Cac8I GCNNGC 1 cut(s) 333
CfoI GCGC 1 cut(s) 187
Cfr13I GGNCC 1 cut(s) 18
CviAII CATG 2 cut(s) 416, 645
CviJI RGCY 4 cut(s) 47, 154, 331, 598
CviKI_1 RGCY 4 cut(s) 47, 154, 331, 598
DinI GGCGCC 1 cut(s) 186
DpnI GATC 1 cut(s) 109
DpnII GATC 1 cut(s) 107
Eam1104I CTCTTC 5 cut(s) 171, 446, 482, 533, 563
EarI CTCTTC 5 cut(s) 171, 446, 482, 533, 563
Eco130I CCWWGG 1 cut(s) 616
Eco47I GGWCC 1 cut(s) 18
EcoO109I RGGNCCY 1 cut(s) 18
EcoRII CCWGG 2 cut(s) 193, 205
EcoT14I CCWWGG 1 cut(s) 616
EcoT22I ATGCAT 1 cut(s) 646
EgeI GGCGCC 1 cut(s) 186
EheI GGCGCC 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 616
FaeI CATG 2 cut(s) 419, 648
FaiI YATR 8 cut(s) 55, 60, 71, 127, 129, 257, 417, 646
FaqI GGGAC 1 cut(s) 634
FatI CATG 2 cut(s) 415, 644
Fnu4HI GCNGC 2 cut(s) 48, 329
FokI GGATG 3 cut(s) 110, 227, 422
Fsp4HI GCNGC 2 cut(s) 48, 329
GlaI GCGC 1 cut(s) 186
GluI GCNGC 2 cut(s) 48, 329
HaeII RGCGCY 1 cut(s) 188
HapII CCGG 1 cut(s) 26
HhaI GCGC 1 cut(s) 187
Hin1I GRCGYC 1 cut(s) 185
Hin1II CATG 2 cut(s) 419, 648
Hin6I GCGC 1 cut(s) 185
HinP1I GCGC 1 cut(s) 185
HinfI GANTC 4 cut(s) 308, 320, 490, 521
HpaII CCGG 1 cut(s) 26
HphI GGTGA 2 cut(s) 277, 523
Hpy188I TCNGA 3 cut(s) 230, 307, 661
Hpy188III TCNNGA 1 cut(s) 281
HpyAV CCTTC 5 cut(s) 31, 93, 262, 496, 539
HpyCH4IV ACGT 1 cut(s) 6
HpyCH4V TGCA 2 cut(s) 638, 644
HpySE526I ACGT 1 cut(s) 6
Hsp92I GRCGYC 1 cut(s) 185
Hsp92II CATG 2 cut(s) 419, 648
HspAI GCGC 1 cut(s) 185
KasI GGCGCC 1 cut(s) 184
Kzo9I GATC 1 cut(s) 107
LmnI GCTCC 1 cut(s) 357
LpnPI CCDG 8 cut(s) 20, 39, 180, 192, 207, 219, 311, 609
Lsp1109I GCAGC 1 cut(s) 34
LweI GCATC 1 cut(s) 631
MaeII ACGT 1 cut(s) 6
MaeIII GTNAC 2 cut(s) 28, 370
MalI GATC 1 cut(s) 109
MboI GATC 1 cut(s) 107
MboII GAAGA 9 cut(s) 188, 463, 499, 550, 571, 574, 577, 580, 601
MluCI AATT 3 cut(s) 91, 102, 653
Mly113I GGCGCC 1 cut(s) 185
MlyI GAGTC 2 cut(s) 314, 499
MmeI TCCRAC 2 cut(s) 208, 566
Mph1103I ATGCAT 1 cut(s) 646
MseI TTAA 4 cut(s) 90, 243, 314, 633
MspI CCGG 1 cut(s) 26
MspR9I CCNGG 3 cut(s) 26, 195, 207
MvaI CCWGG 2 cut(s) 195, 207
NarI GGCGCC 1 cut(s) 185
NciI CCSGG 1 cut(s) 26
NdeII GATC 1 cut(s) 107
NlaIII CATG 2 cut(s) 419, 648
NlaIV GGNNCC 2 cut(s) 186, 199
NmuCI GTSAC 1 cut(s) 28
NsiI ATGCAT 1 cut(s) 646
NspI RCATGY 1 cut(s) 648
PfeI GAWTC 2 cut(s) 308, 521
PkrI GCNGC 2 cut(s) 49, 330
PleI GAGTC 2 cut(s) 314, 498
PluTI GGCGCC 1 cut(s) 188
PpsI GAGTC 2 cut(s) 314, 498
PpuMI RGGWCCY 1 cut(s) 18
Psp5II RGGWCCY 1 cut(s) 18
Psp6I CCWGG 2 cut(s) 193, 205
PspGI CCWGG 2 cut(s) 193, 205
PspN4I GGNNCC 2 cut(s) 186, 199
PspPI GGNCC 1 cut(s) 18
PspPPI RGGWCCY 1 cut(s) 18
SaqAI TTAA 4 cut(s) 90, 243, 314, 633
SatI GCNGC 2 cut(s) 48, 329
Sau3AI GATC 1 cut(s) 107
Sau96I GGNCC 1 cut(s) 18
SchI GAGTC 2 cut(s) 314, 499
ScrFI CCNGG 3 cut(s) 26, 195, 207
SetI ASST 7 cut(s) 9, 23, 156, 387, 458, 518, 600
SfaNI GCATC 1 cut(s) 631
SfoI GGCGCC 1 cut(s) 186
SinI GGWCC 1 cut(s) 18
SmlI CTYRAG 1 cut(s) 599
SmoI CTYRAG 1 cut(s) 599
Sse9I AATT 3 cut(s) 91, 102, 653
SsiI CCGC 1 cut(s) 328
SspDI GGCGCC 1 cut(s) 184
SspI AATATT 1 cut(s) 136
StyD4I CCNGG 3 cut(s) 24, 193, 205
StyI CCWWGG 1 cut(s) 616
TaiI ACGT 1 cut(s) 9
TaqI TCGA 1 cut(s) 106
TasI AATT 3 cut(s) 91, 102, 653
TauI GCSGC 1 cut(s) 331
TfiI GAWTC 2 cut(s) 308, 521
Tru1I TTAA 4 cut(s) 90, 243, 314, 633
Tru9I TTAA 4 cut(s) 90, 243, 314, 633
TscAI CASTG 2 cut(s) 581, 587
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 1 cut(s) 47
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 3 cut(s) 114, 155, 272
TspGWI ACGGA 2 cut(s) 190, 488
TspRI CASTG 2 cut(s) 581, 587
VpaK11BI GGWCC 1 cut(s) 18
XapI RAATTY 2 cut(s) 102, 653
XceI RCATGY 1 cut(s) 648
Zsp2I ATGCAT 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.