Prupe.3G123000_v2.0.a1

Protein trichome birefringence-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0029105
Physical Location & Seq
Reverse (-)
10975633 .. 10977483
1851 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G123000.1

Sequence Viewer

Length: 1260 bp
ATGGACACCATATCCTGCATTGGTGAAGGATGGAGGCTGTGCACAGCTGCAAGCTTTATAAGCTGCATCATTCTGATATTCTTTCTCAACCACAGCCATGACAGGGTAAACCTATCAACTCTTGGGAACATAGCCATAAAATCAACACTACCGGCCAATGAATCAGACGCGAACATGAAGCTCTTGCAAGTAGCAGACTTGAAGGAACACATGAAACAGATAAATAAAGAAGACAAATGCAATGTATTTGATGGAAAATGGGTTTATGATCCGAAGCAAAGCCCTTTCTACCAAGGAGCTCAGTGTCCATTTCTTAGTGACCAAGTCAGCTGCCAAAGGAATGGAAGGGCAGATTTCATGTATGAGAAATGGAGTTGGGAGGCCAAGGGGTGTAAGATTCCAAGGTTTAATGGAACAGACATGTTAGAGAGACTTAGAGGAAAGAGAGTGATAGTAGTTGGGGACTCTCTCAACAGAAACCAGTGGGAATCTCTAGCTTGTCTACTTTACTCAGCTCTCCCTCCCTCTCAAACCCAAGTTGATGTGGAAAGTGGCATCTACAAGGTCTTCACAGCAAAGGAGTATAACTGTTCTGTTGAGTTCTATTGGAGCCCATTTCTAATGCAGCTAGAAATTAACCAAGAGAATGGTGCTAGAATTCTTAGGCTTGACAGAGTTGCTGACTCAGCCAAGAAGTGGATCGGGGCAGATGTTATGGTATTCAACACCGGTCACTGGTGGGTGCACCATGGAAAGATCAAAGCATGGGACTTGTTTCAAAATGGGGGAAAAACGGTGGAGAATATGGAGATTGAATCAGCATTTGAGAAGGCTATGAATACCTGGGCAAGTTGGATTGATCAAAATGTGGATGTGACCAAAACCAGAGTCTTCTTCCGGAGCATTTCACCAGAGCACAAGGGAAAGCTTTGGTGCTACAACAAAACCAAACCCATCACGGACGATTCCTATGAAACAACATTTCCCAGAAAAATTATAGAAGCCATTGAGAGAACAATCCAGCGCATGAAGACCCCGGTGACATACCTGAACATTACGAAGCTGTCTCAGTATCGAAGAGATGCACACCCAATGATTTACAAGACAAAGCAATGGAAGCAGTTAGCTATGCAACAAAGACGACCAGAGTCCTCTGCTGATTGCAGCCACTGGTGTCTGCCTGGCCTGCCAGATACCTGGAATAGGCTATTGTATGCTTCATTGCTCTTGGACACTTCCGAAGTCATTCTTAGCTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

420

Amino Acids

48.49

Weight (kDa)

8.59

Isoelectric Point (pI)

39.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029105)

Species Orthologous Gene IDs
prunus_persica Prupe.3G123000_v2.0.a1
pyrus_communis pycom09g15840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 59
AccB7I CCANNNNNTGG 1 cut(s) 696
AccI GTMKAC 1 cut(s) 502
AccII CGCG 1 cut(s) 170
AccIII TCCGGA 1 cut(s) 897
AclWI GGATC 2 cut(s) 263, 707
AcoI YGGCCR 1 cut(s) 153
AcsI RAATTY 1 cut(s) 657
AfiI CCNNNNNNNGG 4 cut(s) 103, 696, 735, 1203
AflIII ACRYGT 1 cut(s) 420
AgeI ACCGGT 1 cut(s) 728
AgsI TTSAA 4 cut(s) 202, 724, 779, 815
AjnI CCWGG 3 cut(s) 842, 1180, 1196
Alw21I GWGCWC 4 cut(s) 44, 301, 747, 918
Alw26I GTCTC 2 cut(s) 424, 1071
Alw44I GTGCAC 2 cut(s) 40, 743
AlwI GGATC 2 cut(s) 263, 707
AlwNI CAGNNNCTG 1 cut(s) 1170
Aor13HI TCCGGA 1 cut(s) 897
AoxI GGCC 3 cut(s) 153, 381, 1183
ApaLI GTGCAC 2 cut(s) 40, 743
ApeKI GCWGC 5 cut(s) 47, 63, 330, 625, 1164
ApoI RAATTY 1 cut(s) 657
ArsI GACNNNNNNTTYG 2 cut(s) 873, 905
AsiGI ACCGGT 1 cut(s) 728
Asp700I GAANNNNTTC 1 cut(s) 1245
AspLEI GCGC 1 cut(s) 1026
AsuC2I CCSGG 1 cut(s) 1037
AsuHPI GGTGA 3 cut(s) 35, 900, 1051
BaeGI GKGCMC 2 cut(s) 44, 747
BanII GRGCYC 2 cut(s) 301, 614
BbsI GAAGAC 4 cut(s) 237, 559, 883, 1037
Bbv12I GWGCWC 4 cut(s) 44, 301, 747, 918
BbvI GCAGC 5 cut(s) 34, 50, 317, 637, 1176
BccI CCATC 3 cut(s) 24, 245, 962
BciT130I CCWGG 3 cut(s) 844, 1182, 1198
BclI TGATCA 1 cut(s) 859
BcnI CCSGG 1 cut(s) 1037
BcoDI GTCTC 2 cut(s) 424, 1071
BfaI CTAG 3 cut(s) 494, 629, 654
BisI GCNGC 5 cut(s) 48, 64, 331, 626, 1165
BlsI GCNGC 5 cut(s) 49, 65, 332, 627, 1166
Bme1390I CCNGG 4 cut(s) 844, 1037, 1182, 1198
BmiI GGNNCC 1 cut(s) 611
BmrFI CCNGG 4 cut(s) 844, 1037, 1182, 1198
BmsI GCATC 3 cut(s) 75, 564, 1072
BoxI GACNNNNGTC 1 cut(s) 1147
BpiI GAAGAC 4 cut(s) 237, 559, 883, 1037
BpuMI CCSGG 1 cut(s) 1037
BsaJI CCNNGG 6 cut(s) 292, 384, 401, 748, 843, 1035
BsaWI WCCGGW 2 cut(s) 728, 897
Bsc4I CCNNNNNNNGG 4 cut(s) 103, 696, 735, 1203
Bse118I RCCGGY 2 cut(s) 151, 728
Bse1I ACTGG 3 cut(s) 481, 740, 1175
Bse3DI GCAATG 3 cut(s) 247, 1118, 1220
BseAI TCCGGA 1 cut(s) 897
BseBI CCWGG 3 cut(s) 844, 1182, 1198
BseDI CCNNGG 6 cut(s) 292, 384, 401, 748, 843, 1035
BseGI GGATG 2 cut(s) 35, 877
BseLI CCNNNNNNNGG 4 cut(s) 103, 696, 735, 1203
BseMI GCAATG 3 cut(s) 247, 1118, 1220
BseMII CTCAG 4 cut(s) 314, 525, 699, 1082
BseNI ACTGG 3 cut(s) 481, 740, 1175
BseSI GKGCMC 2 cut(s) 44, 747
BseXI GCAGC 5 cut(s) 34, 50, 317, 637, 1176
Bsh1236I CGCG 1 cut(s) 170
BshFI GGCC 3 cut(s) 155, 383, 1185
BshTI ACCGGT 1 cut(s) 728
BsiHKAI GWGCWC 4 cut(s) 44, 301, 747, 918
BsiSI CCGG 4 cut(s) 152, 729, 898, 1037
BslFI GGGAC 2 cut(s) 476, 782
BslI CCNNNNNNNGG 4 cut(s) 103, 696, 735, 1203
BsmAI GTCTC 2 cut(s) 424, 1071
BsmFI GGGAC 2 cut(s) 476, 782
BsnI GGCC 3 cut(s) 155, 383, 1185
Bsp1286I GDGCHC 5 cut(s) 44, 301, 614, 747, 918
Bsp13I TCCGGA 1 cut(s) 897
Bsp143I GATC 4 cut(s) 268, 699, 756, 859
Bsp19I CCATGG 1 cut(s) 748
BspANI GGCC 3 cut(s) 155, 383, 1185
BspCNI CTCAG 4 cut(s) 313, 524, 698, 1081
BspEI TCCGGA 1 cut(s) 897
BspFNI CGCG 1 cut(s) 170
BspLI GGNNCC 1 cut(s) 611
BspPI GGATC 2 cut(s) 263, 707
BsrDI GCAATG 3 cut(s) 247, 1118, 1220
BsrFI RCCGGY 2 cut(s) 151, 728
BsrI ACTGG 3 cut(s) 481, 740, 1175
BssAI RCCGGY 2 cut(s) 151, 728
BssECI CCNNGG 6 cut(s) 292, 384, 401, 748, 843, 1035
BssMI GATC 4 cut(s) 268, 699, 756, 859
BssT1I CCWWGG 4 cut(s) 292, 384, 401, 748
Bst2UI CCWGG 3 cut(s) 844, 1182, 1198
Bst4CI ACNGT 2 cut(s) 590, 796
Bst6I CTCTTC 1 cut(s) 1072
BstC8I GCNNGC 2 cut(s) 52, 1187
BstDEI CTNAG 8 cut(s) 300, 314, 434, 511, 662, 685, 1068, 1250
BstDSI CCRYGG 1 cut(s) 748
BstENI CCTNNNNNAGG 1 cut(s) 1201
BstF5I GGATG 2 cut(s) 35, 877
BstFNI CGCG 1 cut(s) 170
BstHHI GCGC 1 cut(s) 1026
BstKTI GATC 4 cut(s) 271, 702, 759, 862
BstMAI GTCTC 2 cut(s) 424, 1071
BstMBI GATC 4 cut(s) 268, 699, 756, 859
BstMWI GCNNNNNNNGC 4 cut(s) 60, 686, 1117, 1186
BstNI CCWGG 3 cut(s) 844, 1182, 1198
BstNSI RCATGY 1 cut(s) 424
BstPAI GACNNNNGTC 1 cut(s) 1147
BstSCI CCNGG 4 cut(s) 842, 1035, 1180, 1196
BstSLI GKGCMC 2 cut(s) 44, 747
BstUI CGCG 1 cut(s) 170
BstV1I GCAGC 5 cut(s) 34, 50, 317, 637, 1176
BstV2I GAAGAC 4 cut(s) 237, 559, 883, 1037
BstXI CCANNNNNNTGG 3 cut(s) 341, 647, 1197
BsuRI GGCC 3 cut(s) 155, 383, 1185
BtgI CCRYGG 1 cut(s) 748
BtsCI GGATG 2 cut(s) 35, 877
BtsIMutI CAGTG 4 cut(s) 308, 488, 733, 1168
Cac8I GCNNGC 2 cut(s) 52, 1187
CaiI CAGNNNCTG 1 cut(s) 1170
CfoI GCGC 1 cut(s) 1026
Cfr10I RCCGGY 2 cut(s) 151, 728
CseI GACGC 1 cut(s) 176
CspAI ACCGGT 1 cut(s) 728
CviAII CATG 8 cut(s) 98, 175, 211, 358, 421, 749, 765, 1027
DdeI CTNAG 8 cut(s) 300, 314, 434, 511, 662, 685, 1068, 1250
DpnI GATC 4 cut(s) 270, 701, 758, 861
DpnII GATC 4 cut(s) 268, 699, 756, 859
EaeI YGGCCR 1 cut(s) 153
Eam1104I CTCTTC 1 cut(s) 1072
EarI CTCTTC 1 cut(s) 1072
Ecl136II GAGCTC 1 cut(s) 299
Eco130I CCWWGG 4 cut(s) 292, 384, 401, 748
Eco24I GRGCYC 2 cut(s) 301, 614
Eco53kI GAGCTC 1 cut(s) 299
EcoICRI GAGCTC 1 cut(s) 299
EcoNI CCTNNNNNAGG 1 cut(s) 1201
EcoRI GAATTC 1 cut(s) 657
EcoRII CCWGG 3 cut(s) 842, 1180, 1196
EcoT14I CCWWGG 4 cut(s) 292, 384, 401, 748
EcoT38I GRGCYC 2 cut(s) 301, 614
ErhI CCWWGG 4 cut(s) 292, 384, 401, 748
FaeI CATG 8 cut(s) 101, 178, 214, 361, 424, 752, 768, 1030
FalI AAGNNNNNCTT 1 cut(s) 1233
FaqI GGGAC 2 cut(s) 476, 782
FatI CATG 8 cut(s) 97, 174, 210, 357, 420, 748, 764, 1026
FbaI TGATCA 1 cut(s) 859
FblI GTMKAC 1 cut(s) 502
Fnu4HI GCNGC 5 cut(s) 48, 64, 331, 626, 1165
FokI GGATG 2 cut(s) 42, 884
FriOI GRGCYC 2 cut(s) 301, 614
Fsp4HI GCNGC 5 cut(s) 48, 64, 331, 626, 1165
FspBI CTAG 3 cut(s) 494, 629, 654
GlaI GCGC 1 cut(s) 1025
GluI GCNGC 5 cut(s) 48, 64, 331, 626, 1165
HaeIII GGCC 3 cut(s) 155, 383, 1185
HapII CCGG 4 cut(s) 152, 729, 898, 1037
HgaI GACGC 1 cut(s) 176
HhaI GCGC 1 cut(s) 1026
Hin1II CATG 8 cut(s) 101, 178, 214, 361, 424, 752, 768, 1030
Hin6I GCGC 1 cut(s) 1024
HinP1I GCGC 1 cut(s) 1024
HindIII AAGCTT 2 cut(s) 52, 926
HinfI GANTC 9 cut(s) 161, 397, 464, 488, 683, 815, 888, 965, 1148
HpaII CCGG 4 cut(s) 152, 729, 898, 1037
HphI GGTGA 3 cut(s) 35, 900, 1051
Hpy166II GTNNAC 4 cut(s) 42, 109, 503, 745
Hpy188I TCNGA 4 cut(s) 75, 166, 273, 1240
Hpy188III TCNNGA 1 cut(s) 898
Hpy8I GTNNAC 4 cut(s) 42, 109, 503, 745
HpyAV CCTTC 4 cut(s) 20, 196, 339, 823
HpyCH4III ACNGT 2 cut(s) 590, 796
HpyF10VI GCNNNNNNNGC 4 cut(s) 60, 686, 1117, 1186
HpyF3I CTNAG 8 cut(s) 300, 314, 434, 511, 662, 685, 1068, 1250
Hsp92II CATG 8 cut(s) 101, 178, 214, 361, 424, 752, 768, 1030
HspAI GCGC 1 cut(s) 1024
Kpn2I TCCGGA 1 cut(s) 897
Ksp22I TGATCA 1 cut(s) 859
Kzo9I GATC 4 cut(s) 268, 699, 756, 859
LmnI GCTCC 3 cut(s) 296, 609, 900
Lsp1109I GCAGC 5 cut(s) 34, 50, 317, 637, 1176
LweI GCATC 3 cut(s) 75, 564, 1072
MaeI CTAG 3 cut(s) 494, 629, 654
MaeIII GTNAC 4 cut(s) 317, 731, 874, 1039
MalI GATC 4 cut(s) 270, 701, 758, 861
MboI GATC 4 cut(s) 268, 699, 756, 859
MboII GAAGA 6 cut(s) 242, 559, 883, 886, 1042, 1089
MhlI GDGCHC 5 cut(s) 44, 301, 614, 747, 918
MluCI AATT 3 cut(s) 633, 657, 993
MlyI GAGTC 4 cut(s) 458, 677, 897, 1157
MmeI TCCRAC 1 cut(s) 833
MnlI CCTC 6 cut(s) 27, 373, 431, 531, 535, 1162
MroI TCCGGA 1 cut(s) 897
MroXI GAANNNNTTC 1 cut(s) 1245
MseI TTAA 2 cut(s) 408, 636
MslI CAYNNNNRTG 1 cut(s) 96
MspA1I CMGCKG 2 cut(s) 47, 330
MspI CCGG 4 cut(s) 152, 729, 898, 1037
MspR9I CCNGG 4 cut(s) 844, 1037, 1182, 1198
MvaI CCWGG 3 cut(s) 844, 1182, 1198
MvnI CGCG 1 cut(s) 170
MwoI GCNNNNNNNGC 4 cut(s) 60, 686, 1117, 1186
NciI CCSGG 1 cut(s) 1037
NcoI CCATGG 1 cut(s) 748
NdeII GATC 4 cut(s) 268, 699, 756, 859
NlaIII CATG 8 cut(s) 101, 178, 214, 361, 424, 752, 768, 1030
NlaIV GGNNCC 1 cut(s) 611
NmuCI GTSAC 4 cut(s) 317, 731, 874, 1039
NspI RCATGY 1 cut(s) 424
PciI ACATGT 1 cut(s) 420
PdmI GAANNNNTTC 1 cut(s) 1245
PfeI GAWTC 5 cut(s) 161, 397, 488, 815, 965
PflFI GACNNNGTC 1 cut(s) 323
PflMI CCANNNNNTGG 1 cut(s) 696
PinAI ACCGGT 1 cut(s) 728
PkrI GCNGC 5 cut(s) 49, 65, 332, 627, 1166
PleI GAGTC 4 cut(s) 458, 677, 896, 1156
PpsI GAGTC 4 cut(s) 458, 677, 896, 1156
PscI ACATGT 1 cut(s) 420
PshAI GACNNNNGTC 1 cut(s) 1147
PsiI TTATAA 1 cut(s) 59
Psp124BI GAGCTC 1 cut(s) 301
Psp6I CCWGG 3 cut(s) 842, 1180, 1196
PspGI CCWGG 3 cut(s) 842, 1180, 1196
PspN4I GGNNCC 1 cut(s) 611
PstNI CAGNNNCTG 1 cut(s) 1170
PsyI GACNNNGTC 1 cut(s) 323
PvuII CAGCTG 2 cut(s) 47, 330
RseI CAYNNNNRTG 1 cut(s) 96
SacI GAGCTC 1 cut(s) 301
SaqAI TTAA 2 cut(s) 408, 636
SatI GCNGC 5 cut(s) 48, 64, 331, 626, 1165
Sau3AI GATC 4 cut(s) 268, 699, 756, 859
SchI GAGTC 4 cut(s) 458, 677, 897, 1157
ScrFI CCNGG 4 cut(s) 844, 1037, 1182, 1198
SduI GDGCHC 5 cut(s) 44, 301, 614, 747, 918
SfaNI GCATC 3 cut(s) 75, 564, 1072
SmiMI CAYNNNNRTG 1 cut(s) 96
Sse9I AATT 3 cut(s) 633, 657, 993
SspMI CTAG 3 cut(s) 494, 629, 654
SstI GAGCTC 1 cut(s) 301
StyD4I CCNGG 4 cut(s) 842, 1035, 1180, 1196
StyI CCWWGG 4 cut(s) 292, 384, 401, 748
TaaI ACNGT 2 cut(s) 590, 796
TaqI TCGA 1 cut(s) 1075
TasI AATT 3 cut(s) 633, 657, 993
TfiI GAWTC 5 cut(s) 161, 397, 488, 815, 965
Tru1I TTAA 2 cut(s) 408, 636
Tru9I TTAA 2 cut(s) 408, 636
TscAI CASTG 4 cut(s) 308, 488, 740, 1175
TseFI GTSAC 4 cut(s) 317, 731, 874, 1039
TseI GCWGC 5 cut(s) 47, 63, 330, 625, 1164
Tsp45I GTSAC 4 cut(s) 317, 731, 874, 1039
TspDTI ATGAA 8 cut(s) 174, 191, 227, 346, 851, 987, 1043, 1209
TspGWI ACGGA 1 cut(s) 974
TspRI CASTG 4 cut(s) 308, 488, 740, 1175
Tth111I GACNNNGTC 1 cut(s) 323
Van91I CCANNNNNTGG 1 cut(s) 696
VneI GTGCAC 2 cut(s) 40, 743
XagI CCTNNNNNAGG 1 cut(s) 1201
XapI RAATTY 1 cut(s) 657
XceI RCATGY 1 cut(s) 424
XmiI GTMKAC 1 cut(s) 502
XmnI GAANNNNTTC 1 cut(s) 1245
XspI CTAG 3 cut(s) 494, 629, 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.