pycom09g15840

Protein trichome birefringence-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0029105
Physical Location & Seq
Reverse (-)
15928306 .. 15929427
1122 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g15840.3

Sequence Viewer

Length: 696 bp
ATGGAAAATGGGTTTACGATCCAAAGGGAAGTCCTATGCACGAAGGGGCACAGTCTTAACAGAAACCAGTGGGAATCCCTAGCTTGTCTTCTTTACTCAGCTCTACCTCCCTCTCAAACCCTAGTCGATGTGAAAAGTGGCATCTACAAGGTCTTCACAGTTAAGGCATACAACTTTTCTGTTGAGTTCTACTGGAGCCCATTTCTAATGCAGCAGAAAGTGAACCAAGATAATGGTGCTAGAATTCTCAGGCTTGACGGAGTCACAACCTCAGCCATGAAGTGGTTGGGTGCAGACATTATGGTATTCAACACCAGTAACGTGTGGGTGCACCAAGGGAAGACCAAGACGTGGGACTCGTTTCAATATGATGGTAAAACAGTGGAGAATATGGAGATTGAATTAGCATTTGATATGACAATATCTCCCGGGAAATTTAAAAAATTCGTTGAGAGAACAATGCAGCGCCCGGTGACGTACCTGAACATTAGAAGGCTATCTCAGCATGGAAGAGATGCGCATCCAGCGGTTTATGGAACGAAGGAGTTGAAGCAGTTGTTAGCTTTGCAAAAGAGAAAACCAGAGACTTACGCTGATCGCTGCCACAGGTGTTTACCTGGCCTGCCAGATGCCTGGAATAGGCTGTTGTATGTATCTTTAGCCTTGGGCACCTTCAAAGTCATTCTTAGTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

232

Amino Acids

26.57

Weight (kDa)

9.47

Isoelectric Point (pI)

37.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029105)

Species Orthologous Gene IDs
prunus_persica Prupe.3G123000_v2.0.a1
pyrus_communis pycom09g15840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 519
AccB1I GGYRCC 1 cut(s) 668
AccB7I CCANNNNNTGG 2 cut(s) 282, 351
AciI CCGC 1 cut(s) 527
AclWI GGATC 1 cut(s) 13
AcsI RAATTY 3 cut(s) 243, 434, 443
AfaI GTAC 1 cut(s) 479
AfiI CCNNNNNNNGG 3 cut(s) 282, 351, 639
AflIII ACRYGT 1 cut(s) 321
AgsI TTSAA 5 cut(s) 310, 365, 401, 550, 676
AjiI CACGTC 1 cut(s) 351
AjnI CCWGG 2 cut(s) 616, 632
AluBI AGCT 3 cut(s) 83, 101, 563
AluI AGCT 3 cut(s) 83, 101, 563
Alw21I GWGCWC 1 cut(s) 333
Alw26I GTCTC 1 cut(s) 578
Alw44I GTGCAC 1 cut(s) 329
AlwI GGATC 1 cut(s) 13
Ama87I CYCGRG 1 cut(s) 428
AoxI GGCC 1 cut(s) 619
ApaLI GTGCAC 1 cut(s) 329
ApeKI GCWGC 3 cut(s) 211, 463, 600
ApoI RAATTY 3 cut(s) 243, 434, 443
AspLEI GCGC 2 cut(s) 468, 520
AsuC2I CCSGG 3 cut(s) 429, 430, 470
AsuHPI GGTGA 1 cut(s) 484
AvaI CYCGRG 1 cut(s) 428
BaeGI GKGCMC 3 cut(s) 51, 333, 671
BanI GGYRCC 1 cut(s) 668
BanII GRGCYC 1 cut(s) 200
BbsI GAAGAC 3 cut(s) 80, 145, 347
Bbv12I GWGCWC 1 cut(s) 333
BbvCI CCTCAGC 1 cut(s) 271
BbvI GCAGC 3 cut(s) 223, 475, 587
BccI CCATC 1 cut(s) 365
BciT130I CCWGG 2 cut(s) 618, 634
BcnI CCSGG 3 cut(s) 429, 430, 470
BcoDI GTCTC 1 cut(s) 578
BfaI CTAG 3 cut(s) 80, 122, 240
BfoI RGCGCY 1 cut(s) 469
BisI GCNGC 3 cut(s) 212, 464, 601
BlsI GCNGC 3 cut(s) 213, 465, 602
Bme1390I CCNGG 5 cut(s) 429, 430, 470, 618, 634
BmeT110I CYCGRG 1 cut(s) 428
BmgBI CACGTC 1 cut(s) 351
BmiI GGNNCC 2 cut(s) 197, 670
BmrFI CCNGG 5 cut(s) 429, 430, 470, 618, 634
BmsI GCATC 4 cut(s) 150, 505, 529, 619
BpiI GAAGAC 3 cut(s) 80, 145, 347
BpmI CTGGAG 1 cut(s) 214
Bpu10I CCTNAGC 1 cut(s) 271
BpuMI CCSGG 3 cut(s) 429, 430, 470
BsaBI GATNNNNATC 1 cut(s) 519
BsaJI CCNNGG 3 cut(s) 334, 428, 663
BsaXI ACNNNNNCTCC 2 cut(s) 409, 439
Bsc4I CCNNNNNNNGG 3 cut(s) 282, 351, 639
Bse1I ACTGG 3 cut(s) 67, 197, 315
Bse8I GATNNNNATC 1 cut(s) 519
BseBI CCWGG 2 cut(s) 618, 634
BseDI CCNNGG 3 cut(s) 334, 428, 663
BseGI GGATG 1 cut(s) 520
BseJI GATNNNNATC 1 cut(s) 519
BseLI CCNNNNNNNGG 3 cut(s) 282, 351, 639
BseMII CTCAG 4 cut(s) 111, 262, 285, 515
BseNI ACTGG 3 cut(s) 67, 197, 315
BseSI GKGCMC 3 cut(s) 51, 333, 671
BseXI GCAGC 3 cut(s) 223, 475, 587
BsgI GTGCAG 1 cut(s) 312
BshFI GGCC 1 cut(s) 621
BshNI GGYRCC 1 cut(s) 668
BsiHKAI GWGCWC 1 cut(s) 333
BsiHKCI CYCGRG 1 cut(s) 428
BsiSI CCGG 2 cut(s) 429, 470
BslFI GGGAC 1 cut(s) 368
BslI CCNNNNNNNGG 3 cut(s) 282, 351, 639
BsmAI GTCTC 1 cut(s) 578
BsmFI GGGAC 1 cut(s) 368
BsnI GGCC 1 cut(s) 621
BsoBI CYCGRG 1 cut(s) 428
Bsp1286I GDGCHC 4 cut(s) 51, 200, 333, 671
Bsp143I GATC 2 cut(s) 18, 595
BspACI CCGC 1 cut(s) 527
BspANI GGCC 1 cut(s) 621
BspCNI CTCAG 4 cut(s) 110, 261, 284, 514
BspLI GGNNCC 2 cut(s) 197, 670
BspPI GGATC 1 cut(s) 13
BspT107I GGYRCC 1 cut(s) 668
BsrI ACTGG 3 cut(s) 67, 197, 315
BssECI CCNNGG 3 cut(s) 334, 428, 663
BssMI GATC 2 cut(s) 18, 595
BssT1I CCWWGG 2 cut(s) 334, 663
Bst2UI CCWGG 2 cut(s) 618, 634
Bst4CI ACNGT 3 cut(s) 53, 160, 382
Bst6I CTCTTC 1 cut(s) 505
BstC8I GCNNGC 1 cut(s) 623
BstDEI CTNAG 5 cut(s) 97, 248, 271, 501, 686
BstENI CCTNNNNNAGG 1 cut(s) 637
BstF5I GGATG 1 cut(s) 520
BstH2I RGCGCY 1 cut(s) 469
BstHHI GCGC 2 cut(s) 468, 520
BstKTI GATC 2 cut(s) 21, 598
BstMAI GTCTC 1 cut(s) 578
BstMBI GATC 2 cut(s) 18, 595
BstMWI GCNNNNNNNGC 2 cut(s) 502, 524
BstNI CCWGG 2 cut(s) 618, 634
BstSCI CCNGG 5 cut(s) 427, 428, 468, 616, 632
BstSLI GKGCMC 3 cut(s) 51, 333, 671
BstV1I GCAGC 3 cut(s) 223, 475, 587
BstV2I GAAGAC 3 cut(s) 80, 145, 347
BstXI CCANNNNNNTGG 2 cut(s) 233, 633
BsuRI GGCC 1 cut(s) 621
BtrI CACGTC 1 cut(s) 351
BtsCI GGATG 1 cut(s) 520
BtsIMutI CAGTG 2 cut(s) 74, 387
Cac8I GCNNGC 1 cut(s) 623
CfoI GCGC 2 cut(s) 468, 520
Cfr9I CCCGGG 1 cut(s) 428
Csp6I GTAC 1 cut(s) 478
CviAII CATG 2 cut(s) 277, 506
CviQI GTAC 1 cut(s) 478
DdeI CTNAG 5 cut(s) 97, 248, 271, 501, 686
DpnI GATC 2 cut(s) 20, 597
DpnII GATC 2 cut(s) 18, 595
DraI TTTAAA 1 cut(s) 439
Eam1104I CTCTTC 1 cut(s) 505
EarI CTCTTC 1 cut(s) 505
Eco130I CCWWGG 2 cut(s) 334, 663
Eco24I GRGCYC 1 cut(s) 200
Eco88I CYCGRG 1 cut(s) 428
EcoNI CCTNNNNNAGG 1 cut(s) 637
EcoRI GAATTC 1 cut(s) 243
EcoRII CCWGG 2 cut(s) 616, 632
EcoT14I CCWWGG 2 cut(s) 334, 663
EcoT38I GRGCYC 1 cut(s) 200
ErhI CCWWGG 2 cut(s) 334, 663
FaeI CATG 2 cut(s) 280, 509
FalI AAGNNNNNCTT 1 cut(s) 669
FaqI GGGAC 1 cut(s) 368
FatI CATG 2 cut(s) 276, 505
Fnu4HI GCNGC 3 cut(s) 212, 464, 601
FokI GGATG 1 cut(s) 507
FriOI GRGCYC 1 cut(s) 200
Fsp4HI GCNGC 3 cut(s) 212, 464, 601
FspAI RTGCGCAY 1 cut(s) 519
FspBI CTAG 3 cut(s) 80, 122, 240
FspI TGCGCA 1 cut(s) 519
GlaI GCGC 2 cut(s) 467, 519
GluI GCNGC 3 cut(s) 212, 464, 601
GsuI CTGGAG 1 cut(s) 214
HaeII RGCGCY 1 cut(s) 469
HaeIII GGCC 1 cut(s) 621
HapII CCGG 2 cut(s) 429, 470
HhaI GCGC 2 cut(s) 468, 520
Hin1II CATG 2 cut(s) 280, 509
Hin6I GCGC 2 cut(s) 466, 518
HinP1I GCGC 2 cut(s) 466, 518
HinfI GANTC 3 cut(s) 74, 261, 356
HpaII CCGG 2 cut(s) 429, 470
HphI GGTGA 1 cut(s) 484
Hpy166II GTNNAC 4 cut(s) 15, 223, 331, 614
Hpy8I GTNNAC 4 cut(s) 15, 223, 331, 614
HpyAV CCTTC 4 cut(s) 37, 486, 535, 682
HpyCH4III ACNGT 3 cut(s) 53, 160, 382
HpyCH4IV ACGT 3 cut(s) 321, 350, 476
HpyCH4V TGCA 6 cut(s) 39, 211, 293, 331, 463, 568
HpyF10VI GCNNNNNNNGC 2 cut(s) 502, 524
HpyF3I CTNAG 5 cut(s) 97, 248, 271, 501, 686
HpySE526I ACGT 3 cut(s) 321, 350, 476
Hsp92II CATG 2 cut(s) 280, 509
HspAI GCGC 2 cut(s) 466, 518
Kzo9I GATC 2 cut(s) 18, 595
LmnI GCTCC 1 cut(s) 195
Lsp1109I GCAGC 3 cut(s) 223, 475, 587
LweI GCATC 4 cut(s) 150, 505, 529, 619
MaeI CTAG 3 cut(s) 80, 122, 240
MaeII ACGT 3 cut(s) 321, 350, 476
MaeIII GTNAC 3 cut(s) 262, 317, 472
MalI GATC 2 cut(s) 20, 597
MboI GATC 2 cut(s) 18, 595
MboII GAAGA 4 cut(s) 80, 145, 352, 522
MhlI GDGCHC 4 cut(s) 51, 200, 333, 671
MluCI AATT 4 cut(s) 243, 401, 434, 443
MlyI GAGTC 2 cut(s) 270, 350
MnlI CCTC 3 cut(s) 117, 121, 280
MseI TTAA 4 cut(s) 57, 162, 438, 694
MspA1I CMGCKG 1 cut(s) 527
MspI CCGG 2 cut(s) 429, 470
MspR9I CCNGG 5 cut(s) 429, 430, 470, 618, 634
MvaI CCWGG 2 cut(s) 618, 634
MwoI GCNNNNNNNGC 2 cut(s) 502, 524
NciI CCSGG 3 cut(s) 429, 430, 470
NdeII GATC 2 cut(s) 18, 595
NlaIII CATG 2 cut(s) 280, 509
NlaIV GGNNCC 2 cut(s) 197, 670
NmuCI GTSAC 2 cut(s) 262, 472
NsbI TGCGCA 1 cut(s) 519
PcsI WCGNNNNNNNCGW 1 cut(s) 356
PfeI GAWTC 1 cut(s) 74
PflFI GACNNNGTC 1 cut(s) 260
PflMI CCANNNNNTGG 2 cut(s) 282, 351
PkrI GCNGC 3 cut(s) 213, 465, 602
PleI GAGTC 2 cut(s) 269, 350
PpsI GAGTC 2 cut(s) 269, 350
Psp6I CCWGG 2 cut(s) 616, 632
PspGI CCWGG 2 cut(s) 616, 632
PspN4I GGNNCC 2 cut(s) 197, 670
PsyI GACNNNGTC 1 cut(s) 260
RsaI GTAC 1 cut(s) 479
RsaNI GTAC 1 cut(s) 478
SaqAI TTAA 4 cut(s) 57, 162, 438, 694
SatI GCNGC 3 cut(s) 212, 464, 601
Sau3AI GATC 2 cut(s) 18, 595
SchI GAGTC 2 cut(s) 270, 350
ScrFI CCNGG 5 cut(s) 429, 430, 470, 618, 634
SduI GDGCHC 4 cut(s) 51, 200, 333, 671
SfaNI GCATC 4 cut(s) 150, 505, 529, 619
SmaI CCCGGG 1 cut(s) 430
Sse9I AATT 4 cut(s) 243, 401, 434, 443
SsiI CCGC 1 cut(s) 527
SspMI CTAG 3 cut(s) 80, 122, 240
StyD4I CCNGG 5 cut(s) 427, 428, 468, 616, 632
StyI CCWWGG 2 cut(s) 334, 663
TaaI ACNGT 3 cut(s) 53, 160, 382
TaiI ACGT 3 cut(s) 324, 353, 479
TaqI TCGA 1 cut(s) 126
TasI AATT 4 cut(s) 243, 401, 434, 443
TfiI GAWTC 1 cut(s) 74
Tru1I TTAA 4 cut(s) 57, 162, 438, 694
Tru9I TTAA 4 cut(s) 57, 162, 438, 694
TscAI CASTG 2 cut(s) 74, 387
TseFI GTSAC 2 cut(s) 262, 472
TseI GCWGC 3 cut(s) 211, 463, 600
Tsp45I GTSAC 2 cut(s) 262, 472
TspDTI ATGAA 1 cut(s) 293
TspGWI ACGGA 1 cut(s) 273
TspMI CCCGGG 1 cut(s) 428
TspRI CASTG 2 cut(s) 74, 387
Tth111I GACNNNGTC 1 cut(s) 260
Van91I CCANNNNNTGG 2 cut(s) 282, 351
VneI GTGCAC 1 cut(s) 329
XagI CCTNNNNNAGG 1 cut(s) 637
XapI RAATTY 3 cut(s) 243, 434, 443
XcmI CCANNNNNNNNNTGG 1 cut(s) 283
XmaI CCCGGG 1 cut(s) 428
XspI CTAG 3 cut(s) 80, 122, 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.